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10183 Коммитов

Автор SHA1 Сообщение Дата
Howard Pritchard
e851879081
Merge pull request #5994 from rhc54/cmr40/cleanup
Remove stale defunct tools
2018-10-31 13:29:57 -06:00
Ralph Castain
ba6ad9fe42 Remove stale defunct tools
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
(cherry picked from commit 05ac8fa71c)
2018-10-30 08:51:25 -07:00
Sergey Oblomov
0846c9d112 COMMON/UCX: added error code to log output
Also fixes a PGI compilation error with --enable-debug.

Signed-off-by: Geoff Paulsen <gpaulsen@users.noreply.github.com>
Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
(cherry picked from commit 1099d5f023)
2018-10-30 09:55:25 -05:00
Ralph Castain
712ddd326f Remove the stale orte-dvm code
Users should migrate to https://github.com/pmix/prrte

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
(cherry picked from commit 1bd772e8eb)
2018-10-30 07:54:35 -07:00
Howard Pritchard
f9d2f3b912
Merge pull request #5941 from hppritcha/topic/remove_bfo_pml_v4.0.x
v4.0.x: remove the bfo pml
2018-10-22 09:50:05 -06:00
Howard Pritchard
a806d09450 remove the bfo pml
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
(cherry picked from commit 7d6774acf8)
2018-10-17 14:00:11 -06:00
Howard Pritchard
cd7d70156c
Merge pull request #5899 from jsquyres/pr/v4.0.x/fix-c99-comments-in-mpih
v4.0.x: mpi.h.in: remove C99-style comments
2018-10-16 16:33:08 -06:00
Howard Pritchard
2752d43f65
Merge pull request #5875 from kawashima-fj/pr/v4.0.x/javadoc-tag
v4.0.x: java: Fix javadoc build failure with OpenJDK 11
2018-10-16 16:29:34 -06:00
Howard Pritchard
7ceb508b93
Merge pull request #5889 from yosefe/topic/pml-ucx-fix-datatype-leak-v4.0.x
pml_ucx: add ompi datatype attribute to release ucp_datatype - v4.0.x
2018-10-16 16:29:01 -06:00
Howard Pritchard
e2cf1e3ec5
Merge pull request #5887 from yosefe/topic/osc-ucx-fix-finalize-hang-v4.0.x
osc_ucx: fix hang/timeout in component finalize - v4.0
2018-10-16 09:21:50 -06:00
Howard Pritchard
753087ab17
Merge pull request #5888 from hoopoepg/topic/fixed-zero-size-window-v4.0
OSC/UCX: fixed zero-size window processing - v4.0.x
2018-10-16 09:21:08 -06:00
Gilles Gouaillardet
2b5a7ca816 fortran: add CHARACTER and LOGICAL support to MPI_Sizeof()
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>

(cherry picked from commit open-mpi/ompi@e4001040b4)
2018-10-12 14:10:45 +09:00
Jeff Squyres
600967d2ed mpi.h.in: remove C99-style comments
While we require C99 to build Open MPI, we do not require C99 to build
user MPI applications.  As such, we shouldn't have C99-style comments
(i.e., "//"-style) in mpi.h.in.

Thanks to @AdamSimpson for reporting the issue.

This commit simply converts a //-style comment to a /**/-style
comment.  No code or logic changes.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
(cherry picked from commit f4b3ccabf7)
2018-10-11 11:54:30 -04:00
Yossi Itigin
eabc94cab0 osc_ucx: add worker flush before osc module free
Make sure all pending communications are done on all ranks before
closing the window. This way it will be safe to close the endpoints when
closing the component.

(picked from master b8e1af6)

Signed-off-by: Yossi Itigin <yosefe@mellanox.com>
2018-10-10 23:02:19 +03:00
Yossi Itigin
4a97d6b9fa pml_ucx: fix return code from mca_pml_ucx_init()
(picked from master 40ac9e4)

Signed-off-by: Yossi Itigin <yosefe@mellanox.com>
2018-10-10 20:23:49 +03:00
Yossi Itigin
1bffd196ef pml_ucx: add ompi datatype attribute to release ucp_datatype
(picked from master 4763822)

Signed-off-by: Yossi Itigin <yosefe@mellanox.com>
2018-10-10 20:23:26 +03:00
Sergey Oblomov
274cbc3c03 OSC/UCX: fixed zero-size window processing
- added processing of zero-size MPI window

Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
(cherry picked from commit ae6f81983f)
2018-10-10 16:49:02 +03:00
Howard Pritchard
d18ea98263
Merge pull request #5843 from kawashima-fj/pr/v4.0.x/correct-f08-signatures
v4.0.x: fortran/use-mpi-f08: Correct f08 routine signatures
2018-10-09 10:22:07 -05:00
KAWASHIMA Takahiro
dd1b3eac1e java: Fix javadoc build failure with OpenJDK 11
OpenJDK 11 changed the default javadoc output HTML version to HTML 5
from HTML 4.01. It causes an error on building Open MPI configured
with `--enable-mpi-java` (default: disable). This fix is compatible
with older OpenJDK.

I don't know whether this problem exists with other vender's JDKs.
But this fix should be compatible with other JDKs because the new
syntax is used in other places in the same file.

Thanks to Siegmar Gross for the bug report.

Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
(cherry picked from commit b491b454dc)
2018-10-09 21:48:10 +09:00
Geoff Paulsen
499ddedd7c
Merge pull request #5844 from kawashima-fj/pr/v4.0.x/pcollreq-f08-signatures
v4.0.x: mpiext/pcollreq: Correct f08 routine signatures
2018-10-05 13:42:35 -05:00
KAWASHIMA Takahiro
4dd21111f0 mpiext/pcollreq: Add Fortran bindings in man
Fortran bindings were added to persistent collectives in 9e0115c980
but man was not updated.

Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
(cherry picked from commit 43d85dbc81)
2018-10-05 09:43:39 +09:00
KAWASHIMA Takahiro
092cf1937d man: Correct markup of MPI_Neighbor_allgather
Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
(cherry picked from commit 994b345253)
2018-10-05 09:43:39 +09:00
KAWASHIMA Takahiro
080c52f906 mpiext/pcollreq: Add missing f08 asynchronous
Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
(cherry picked from commit be91a26fd8)
2018-10-05 09:33:17 +09:00
KAWASHIMA Takahiro
fcc698f27f mpiext/pcollreq: Correct f08 routine signatures
Changes of nonblocking collectives in e98d794e8b and f750c6932c
are applied to persistent collectives.

Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
(cherry picked from commit 357531847e)
2018-10-05 09:33:16 +09:00
KAWASHIMA Takahiro
b9316d3136 fortran/use-mpi-f08: Correct f08 routine signatures
Following the commit f750c6932c, I compared
`ompi/mpi/fortran/use-mpi-f08/*.F90` and
`ompi/mpi/fortran/use-mpi-f08/profile/p*.F90`, and
`ompi/mpi/fortran/use-mpi-f08/mod/mpi-f08-interfaces.F90` and
`ompi/mpi/fortran/use-mpi-f08/mod/pmpi-f08-interfaces.F90`.

There are many differences. Some are bugs of `MPI_*`, some are
bugs of `PMPI_*`. I'm not sure how these bugs affect applications.

To make it easy to compare these files future, I also removed
editorial differences.

Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
(cherry picked from commit cf6d28cb66)
2018-10-05 09:04:17 +09:00
Geoff Paulsen
c0796664b1
Merge pull request #5780 from jsquyres/pr/v4.0.x/moar-fortran-fixes
v4.0.x: Fortran 08 bindings fixes
2018-10-04 16:08:30 -05:00
Geoff Paulsen
5cae0ec25b
Merge pull request #5794 from bwbarrett/v4.0.x-ofi-mtl-selection
mtl ofi: Change from opt-in to opt-out provider selection
2018-10-03 08:31:07 -05:00
Jeff Squyres
46dd266e45 mpi.h: remove MPI_UB/MPI_LB when not enabling MPI-1 compat
When --enable-mpi1-compatibility was specified, the ompi_mpi_ub/lb
symbols were #if'ed out of mpi.h.  But the #defines for MPI_UB/LB
still remained.  This commit also #if's out the MPI_UB/LB macros when
--enable-mpi1-compatibility is specified.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
(cherry picked from commit 7223334d4d)
2018-09-28 10:01:48 -07:00
Brian Barrett
10d0a430c4 mtl ofi: Change from opt-in to opt-out provider selection
Change default provider selection logic for the OFI MTL.  The
old logic was whitelist-only, so any new HPC NIC provider would
have to ask users to do extra work or wait for an OMPI release
to be whitelisted.  The reason for the logic was to avoid
selecting a "generic" provider like sockets or shm that would
frequently have worse performance than the optimized BTL options
Open MPI supports.

With the change, we blacklist the (small, relatively static) list
of providers that duplicate internal capabilities.  Users can use
one of thse blacklisted providers in two ways: first, they can
explicitly request the provider in the include list (which will
override the default exclude list) and second, the can set a new
empty exclude list.

Since most HPC networks require special libraries and therefore
an explicit build of libfabric, it is highly unlikely that this
change will cause users to use libfabric when they didn't want to
do so.  It does, however, solve the whitelisting problem.

Signed-off-by: Brian Barrett <bbarrett@amazon.com>
(cherry picked from commit c5eaa38491)
2018-09-27 18:41:47 +00:00
Gilles Gouaillardet
ce5959ba6c fortran/use-mpi-f08: Corrections to PMPI signatures of collectives
Corrected the signatures of the collectives used by the Fortran 2008
interface to state correct intent for inout arguments and use the
ASYNCHRONOUS attribute in non-blocking collective calls.

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
(cherry picked from commit f750c6932c)
2018-09-26 12:34:46 -07:00
Philipp Otte
e98eae3da6 fortran/use-mpi-f08: Corrections to Fortran08 signatures of collectives
Corrected the signatures of the collectives used by the Fortran 2008
interface to state correct intent for inout arguments and use the
ASYNCHRONOUS attribute in non-blocking collective calls. Also corrected
the C-bindings in Fortran accordingly

Signed-off-by: Philipp Otte <philipp.j.otte@googlemail.com>
(cherry picked from commit e98d794e8b)
2018-09-26 12:34:46 -07:00
Geoff Paulsen
9d9ae9286c
Merge pull request #5753 from gpaulsen/man-page-script-abstraction-break
Fix script abstraction break: mv make_manpage.pl to config
2018-09-23 09:01:19 -05:00
Jeff Squyres
c83b30755a Fix script abstraction break: mv make_manpage.pl to config
Having the "make_manpage.pl" script in the ompi/ tree broke
"./autogen.pl --no-ompi" (specifically: "make distcheck" of --no-ompi
builds would break).

(cherry picked from commit 89773c41)
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-09-22 15:11:06 -05:00
Geoff Paulsen
3d4164e1e1
Merge pull request #5752 from gpaulsen/misc-warnings-fixes
Miscellaneous compiler warning stomps.
2018-09-22 15:01:53 -05:00
Geoff Paulsen
bc798b6135
Merge pull request #5755 from gpaulsen/osc_rdma_cleanup
osc/rdma: clean out stale aggregation code
2018-09-22 15:00:21 -05:00
Nathan Hjelm
72fc8acb50 osc/rdma: quiet warning
gcc complains about ret possibly being used uninitialized. That will
never happen but we should still quiet the warning. This commit sets
ret to a valid value.

Fixes #5513

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-09-21 14:44:56 -05:00
Nathan Hjelm
56e31f8206 osc/rdma: clean out stale aggregation code
The aggregation code in osc/rdma is currently broken and will likely
not be reused. This commit cleans it out.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-09-21 14:42:45 -05:00
Jeff Squyres
2e37f97a38 Miscellaneous compiler warning stomps.
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
(cherry picked from commit fe0852bcb4)
2018-09-21 14:35:51 -05:00
Geoff Paulsen
4688da0631
Merge pull request #5736 from hoopoepg/topic/topic/common-del-procs-v4.0
MCA/COMMON/UCX: del_procs calls are unified to common module - v4.0
2018-09-20 18:12:25 -05:00
Geoff Paulsen
1a65b0ab66
Merge pull request #5741 from ggouaillardet/topic/v4.0.x/use_mpi_f08_bindings
v4.0.x: fortran/use-mpi-f08: clean [p]ompi_FOO_f bindings
2018-09-20 18:10:11 -05:00
Gilles Gouaillardet
d0a0fe818f fortran/use-mpi-f08: use bindings from ompi_mpifh_bindings
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>

(cherry picked from commit open-mpi/ompi@c4ce01d104)
2018-09-20 10:37:33 +09:00
Gilles Gouaillardet
afb66d222b fortran/use-mpi-f08: fix [p]ompi_FOO_f symbols handling
- do not generate bindings for pompi_FOO_f symbols
   (they are simply not used anywhere)

 - move ompi_FOO_f bindings out of mpi_f08.mod into
   ompi_mpifh_bindings.mod that is only used at build time

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>

(cherry picked from commit open-mpi/ompi@c6070fd2e0)
2018-09-20 10:37:01 +09:00
Gilles Gouaillardet
03d994c9cf configury: do not define "dummy" empty targets any more.
We previously needed to have empty targets because AM couldn't handle
having an AM_CONDITIONAL was targets in the "if" statement but not in the
"else".  :-(

That now appears as an old automake bug that has been fixed,
so cleanup some Makefile.am

Thanks Jeff for the pointer.

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>

(cherry picked from commit open-mpi/ompi@6e04b2a66a)
2018-09-20 10:36:41 +09:00
Gilles Gouaillardet
98156b7ace use-mpi-f08: fix a typo in [P]MPI_Dist_graph_create_adjacent bindings
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>

(cherry picked from commit open-mpi/ompi@d2393251f7)
2018-09-20 10:36:01 +09:00
Sergey Oblomov
3cace87749 MCA/COMMON/UCX: del_procs calls are unified to common module
Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
(cherry picked from commit 920cc2e0d9)
2018-09-19 10:47:27 +03:00
George Bosilca
8d892f9917 Be conservative with the array_of_indices
We were assuming that the array_of_indices has the same size as the
number of requests (incount), instead of the numberr of actually
active requests. While the patch is trivial, the question of the
size of the array_of_indices should be clarified in the MPI Forum.

Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
(cherry picked from commit a5fbfa476a)
2018-09-18 12:05:51 -07:00
Howard Pritchard
3a584fee53
Merge pull request #5723 from ggouaillardet/topic/v4.0.x/libnbc_error_path
coll/libnbc: fix various error paths
2018-09-18 09:29:45 -06:00
KAWASHIMA Takahiro
e83e118ae7 mpiext/pcollreq: fix more typos
Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
(cherry picked from commit 4a0a2598f6)
2018-09-18 15:43:06 +09:00
Gilles Gouaillardet
ece18aed45 coll/libnbc: fix various error paths
The parameter passed to NBC_Return_handle() was incorrectly casted
and not dereferenced.

Thanks Yossi for the bug report.

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>

(cherry picked from commit open-mpi/ompi@8b51862fb2)
2018-09-18 15:29:33 +09:00
Gilles Gouaillardet
73f531a8f2 mpiext/pcollreq: fix misc typos
Thanks Jeff for the report

Fixes open-mpi/ompi#5712

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>

(cherry picked from commit open-mpi/ompi@8dc6985a5a)
2018-09-18 12:47:04 +09:00