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Граф коммитов

22553 Коммитов

Автор SHA1 Сообщение Дата
Howard Pritchard
f7bf2f7d83 configury/alps: reduce alps verbosity
reduce chattiness of orte_check_alps.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2015-03-27 11:50:05 -07:00
Nathan Hjelm
6d1a41611f MCA/base: Detect overlapping variable names.
Signed-off-by: Nathan Hjelm <hjelmn@me.com>
2015-03-27 10:59:05 -06:00
Nathan Hjelm
de1e7d58e1 Add support setting variables from project_name environment variables
Signed-off-by: Nathan Hjelm <hjelmn@me.com>
2015-03-27 10:59:05 -06:00
Nathan Hjelm
b68d66bb9b MCA: Add the project/project version to the MCA base component
This commit adds support for project_framework_component_* parameter
matching. This is the first step in allowing the same framework name
in multiple projects. This change also bumps the MCA component version
to 2.1.0.

All master frameworks have been updated to use the new component
versioning macro. An mca.h has been added to each project to add a
project specific versioning macro of the form
PROJECT_MCA_VERSION_2_1_0.

Signed-off-by: Nathan Hjelm <hjelmn@me.com>
2015-03-27 10:59:04 -06:00
Nathan Hjelm
e91084e20b Merge pull request #492 from hjelmn/subarray_fix
ompi/datatype: fix subarray datatype
2015-03-27 10:50:46 -06:00
Jeff Squyres
2145dfb2e8 Merge pull request #498 from jsquyres/pr/hwloc-19x-updates
hwloc 1.9.x updates
2015-03-27 10:19:46 -04:00
Jeff Squyres
0c502d90cd hwloc README-ompi.txt: update for what we pulled from hwloc
Document what we pulled from the hwloc tree.
2015-03-27 06:49:42 -07:00
Brice Goglin
29ccbfd590 hwloc pci: fix bridge depth
It was setup in the PCI backend before filtering,
and partially updated after filtering in the core.
Only setup once correctly after filtering in the core.

(cherry picked from commit open-mpi/hwloc@9659653d24)

Conflicts:
	tests/hwloc/linux/40intel64-2g2n4c+pci.output
	tests/hwloc/xml/192em64t-12gr2n8c2t-distancegroups.xml
	tests/hwloc/xml/192em64t-24n8c2t-distancegroups.xml
	tests/hwloc/xml/192em64t-24n8c2t-nodistancegroups.xml
	tests/hwloc/xml/24em64t-2n6c2t-pci.xml
	tests/hwloc/xml/32em64t-2n8c2t-pci-normalio.xml
	tests/hwloc/xml/96em64t-4n4d3ca2co-pci.xml
	utils/hwloc/test-hwloc-compress-dir.input.tar.gz
	utils/hwloc/test-hwloc-compress-dir.output.tar.gz

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2015-03-27 06:49:39 -07:00
Brice Goglin
1905f35a1e hwloc: bitmap: fix a corner case in hwloc_bitmap_isincluded() with infinite sets
If super_set contains more allocated ulongs than sub_set,
we did not check the last ulongs.
We would return true instead of false when sub_set is
infinite while the last ulongs in super_set are not full.

This fixes tests/hwloc_bitmap_compare_inclusion on some platforms.

(cherry picked from commit open-mpi/hwloc@299e6e846f)
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2015-03-27 05:14:44 -07:00
Brice Goglin
5c9157c547 hwloc: core: only update root->complete sets if insert succeeds
Otherwise we get spurious bits for crazy topologies such as 8em64t-2s2ca2c-buggynuma.output

Will make debug asserts easier.

(cherry picked from commit open-mpi/hwloc@546cd9330a)
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2015-03-27 05:14:44 -07:00
Brice Goglin
dec01097f8 hwloc: groups: add complete sets when inserting distance/pci groups
Make sure we define complete cpuset/nodeset when we define groups' main cpuset/nodeset
during later insert of groups (for PCI hostbridges or distances).
Otherwise they may end up clearing child/parent complete sets which
suddenly become incoherent while they were fixed earlier.

Needed to fix allowed_nodeset meaning.

(cherry picked from commit open-mpi/hwloc@7c88d17add)
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2015-03-27 05:14:33 -07:00
Brice Goglin
d6e415cd41 hwloc: AIX: Fix PU os_index
When looking for PUs inside R_MAXSDL rads, some AIX 6.1 releases
return one first rad without any PU.
AIX 6.1 00F63F144C00 does (on quad-power7).
AIX 6.1 00CBAAC24C00 doesn't (on 16x power6).

So we can't assume rad #x contains PU #x. But we already have the right
code to fill the cpuset from the rad, so use that to obtain the PU os_index
as well.

Cannot be used to obtain NUMA node os_index since there's no way to directly
retrieve NUMA nodes from rads (mempools seem unrelated). Just keep using #rad
for NUMA nodes os_index and document that convention when converting back in
set_membind().

Thanks to Hendryk Bockelmann and Erik Schnetter for helping debugging.

(cherry picked from commit open-mpi/hwloc@60006c7b88)
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2015-03-27 05:14:33 -07:00
Brice Goglin
80140bbe7b hwloc: distances: when we fail to insert an intermediate group, don't try to group further above
Otherwise we'll have some NULL objects above, would be annoying.
No need to dig further, the distance matrix is likely buggy.

We still keep the inserted groups at this level (incomplete level)
because removing them is hard.

(cherry picked from commit open-mpi/hwloc@312a971ec9)
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2015-03-27 05:14:33 -07:00
Brice Goglin
29c99156cf hwloc: pci: fix SR-IOV VF vendor/device names
Commit 626129d2818693e62b83c1cfa2ba6e058e5bed66 fixed the hwloc
device/vendor numbers obtained from libpciaccess.
But the corresponding names are still retrieved from pciaccess numbers,
so fix these numbers inside pciaccess structures before retrieving the names.

(cherry picked from commit open-mpi/hwloc@85ea6e4acc)
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2015-03-27 05:14:32 -07:00
Brice Goglin
da164be0ef hwloc: error: point to the FAQ when displaying the big OS error message
(cherry picked from commit open-mpi/hwloc@b191f816f6)
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2015-03-27 05:14:32 -07:00
Brice Goglin
3f96e7a271 hwloc: synthetic: Misc levels are not allowed in the synthetic description
Misc objects were used between system and machine in the past
but quickly got replaced with groups.

(cherry picked from commit open-mpi/hwloc@6c2aa6d1ea)
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2015-03-27 05:14:16 -07:00
Brice Goglin
050bb35feb hwloc: x86: use Group instead of Misc for unknown x2apic levels
Misc are reserved for annotating the topology, the core
doesn't like merging them. Group is more appropriate.

(cherry picked from commit open-mpi/hwloc@3c47649591)
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2015-03-27 05:14:16 -07:00
Brice Goglin
379c7b0d8b hwloc: x86: use ulong for cache sizes, uint won't be enough in the near future
(cherry picked from commit open-mpi/hwloc@ae82597773)
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2015-03-27 05:14:16 -07:00
Brice Goglin
6caf9edbea hwloc: hpux: improve hwloc_hpux_find_ldom() looking for NUMA node
hwloc_get_first_largest_obj_inside_cpuset() returns the largest/highest object,
but it could still have a child with the same cpuset.
So check children as well in case there's a matching NUMA node there.

(cherry picked from commit open-mpi/hwloc@57a1c4fbe4)
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2015-03-27 05:14:16 -07:00
Brice Goglin
fff1bb5dcd hwloc: core: reorder children in merge_useless_child() as well
When ignore_keep_structure is enabled, intermediate level can disappear
between parent and child, making the new child complete_cpuset smaller,
causing the child list to require a reorder just like in remove_ignored().

(cherry picked from commit open-mpi/hwloc@88afbe6b62)

Embed this related commit:
core: abstract out reorder_children(), needed when merging modifies the list of children
(cherry picked from commit open-mpi/hwloc@14db82d391)

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2015-03-27 05:14:16 -07:00
Brice Goglin
77978a846e hwloc: core: fix the merging of identical objects in presence of Misc objects
If object A contains B + I/O as children, we can "ignore" I/Os and still
try to merge A and B. We now do the same for Misc objects without cpusets
instead of I/Os.

This fixes a corner case when export/reimport to XML creates a slightly
different topology (making hwloc_insert_misc fail inside a Linux cgroup).

Thanks to Dave Love for reporting the problem.

Fixes #118

(cherry picked from commit open-mpi/hwloc@650371e115)
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2015-03-27 05:14:15 -07:00
Brice Goglin
5427b33caf hwloc: debug: fix an overzealous assertion about the parent cpuset vs its children
When I/O are attached under a PU, removing the children's cpusets from
the parent cpuset doesn't give 0, it gives the PU cpuset.
The assertion fails on single-pu machines with I/O when --merge is given,
only one PU remains with I/O under it.

But if we insert Misc by cpuset under PU, it gives 0 as expected.

Fix the assertion accordingly.

Thanks to Thomas Van Doren for reporting the issue.

(cherry picked from commit open-mpi/hwloc@45c94c336d)
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2015-03-27 05:14:15 -07:00
Brice Goglin
9b59d532fc hwloc: cpuid-x86: Fix duplicate asm labels in case of heavy inlining on x86-32
hwloc_x86_discover() calls hwloc_look_x86() twice, which calls hwloc_have_x86_cpuid().
If everything gets inlined, the asm label inside hwloc_have_x86_cpuid()
is duplicated.
Use a local label with f annotation in jumps to avoid the problem.

Thanks to Thomas Van Doren for reporting the issue (found with gcc -m32).

(cherry picked from commit open-mpi/hwloc@50e447f5bc)
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2015-03-27 05:14:15 -07:00
Brice Goglin
86a536ca58 hwloc: x86 and OSF: Don't forget to set NUMA node nodeset
x86: Not critical since BSDs that use this backend have no membind support,
but better fix it for uniformization.
(cherry picked from commit open-mpi/hwloc@a431361c7d)

OSF: Looks like nobody ever tried to play with memory binding on OSF/Tru64.
(cherry picked from commit open-mpi/hwloc@2d6c73356d)

Conflicts:
	NEWS

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2015-03-27 05:14:15 -07:00
Brice Goglin
db5bc72496 hwloc: API: clearly state that os_index isn't unique while logical_index is
(cherry picked from commit open-mpi/hwloc@6c75302ab2)

Conflicts:
	opal/mca/hwloc/hwloc191/hwloc/include/hwloc.h

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2015-03-27 05:14:15 -07:00
Brice Goglin
a636790604 hwloc: opal/mca/hwloc/hwloc191/hwloc/NEWS update
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2015-03-27 05:13:41 -07:00
Brice Goglin
7c96aecfaf hwloc: errors: improve the advice to send hwloc-gather-topology files in the OS error message
(cherry picked from commit open-mpi/hwloc@f77aa01b3c)
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2015-03-27 05:13:41 -07:00
Brice Goglin
d5f8c89527 hwloc: configure: fix the check for X11/Xutil.h
At least some solaris enforce the need to #include X11/Xlib.h first.

Thanks to Siegmar Gross for reporting the issue.

(cherry picked from commit open-mpi/hwloc@005a7e89b6)
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2015-03-27 05:13:01 -07:00
Brice Goglin
50b035dddb hwloc: misc.h: Fix hwloc_strncasecmp() with some icc
tolower needs <ctype.h>

Thanks to Ralph Castain for reporting the failure.

(cherry picked from commit open-mpi/hwloc@038c372a58)
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2015-03-27 05:10:57 -07:00
Brice Goglin
6764413aa3 hwloc: misc.h: Fix hwloc_strncasecmp() build under strict flags on BSD
strncasecmp() needs <strings.h>

Thanks to Pavan Balaji for reporting the failure.

(cherry picked from commit open-mpi/hwloc@37439c4801)
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2015-03-27 05:10:46 -07:00
Brice Goglin
6b0011f138 hwloc: v1.9.1 released, doing 1.9.2rc1 now
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2015-03-27 05:06:15 -07:00
Jeff Squyres
a85edb8ad4 libfabric: update to Github libfabric 0d7daf720f04 2015-03-26 14:40:46 -07:00
Jeff Squyres
7f3aab9cfa opal_get_version.m4sh: remove stale code
Since getting the git version is very fast (vs. "svnversion"), we
aren't using the opal_ver_need_repo_rev var any more.  So remove this
stale code.
2015-03-26 14:38:17 -07:00
Jeff Squyres
ee70473c48 README: Remove stale SVN/HG reference 2015-03-26 14:38:17 -07:00
Elena
90f5b2bb84 Introduce -tune command line option to set env vars and mca params from file 2015-03-26 18:33:53 +02:00
Jeff Squyres
f61d1db1b3 openmpi-nightly-coverity.pl: bring updates from PMIx
We just enabled Coverity builds for the PMIx project; bring over the
improvements from the PMIx nightly coverity script to this script.
2015-03-26 11:19:14 -04:00
Jeff Squyres
71aae38540 opal_setup_cc.m4: add comment with the specific warning
Also collapse a grep/test into a single statement.
2015-03-26 04:13:53 -07:00
rhc54
2ff7575dde Merge pull request #497 from rhc54/topic/sec
Allow for different security domains.
2015-03-25 21:01:29 -07:00
Ralph Castain
6aa33deafb Remove debug 2015-03-25 19:58:51 -07:00
Ralph Castain
47b4ce3ed4 Merge branch 'master' of ssh://github.com/open-mpi/ompi 2015-03-25 19:57:12 -07:00
Ralph Castain
10cf455080 Tools need to use the TCP OOB component 2015-03-25 19:56:49 -07:00
Nathan Hjelm
8b81d9b373 Merge pull request #496 from hjelmn/asm_fix
asm/ia32: do not use the = constraint modifier for input/output operands
2015-03-25 14:51:57 -06:00
Ralph Castain
1b24536941 Allow for different security domains. Let the initiator of the connection determine the method to be used - if the receiver cannot support it, then that's an error that will cause the connection attempt to fail. 2015-03-25 13:22:01 -07:00
Nathan Hjelm
26f96c0049 asm/ia32: do not use the = constraint modifier for input/output
operands

Also added support for the xchg instruction. The instruction is
supported by ia32 and may benefit vader.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-03-25 13:42:27 -06:00
Jeff Squyres
a50f103c0f opal_setup_cc.m4: don't use -finline-functions with clang
Some versions of clang (at least >= 3.5 -- perhaps older versions,
too?) will *warn* about -finline-functions, but still allow it.  This
is very annoying, so check for that warning, too.
2015-03-25 10:31:51 -07:00
Devendar Bureddy
71c28cea65 HCOLL: hcoll dte fixes
- hcoll currently do not support datatype with gaps around it (i.e dtsize !=
dtextent)
    - check for user defined Ops.
2015-03-25 16:04:11 +02:00
Ralph Castain
6ba76ed8d8 Per user request, we allow -host to specify a host that is not included in a hostfile (however, we reject it if we were given an allocation by a resource manager). Since we cannot know if an IP addr form references the same node that was previously given as a string name, we have no choice but to assume they are different. Get the topology from the right place in that situation so mpirun can succeed. 2015-03-25 06:16:01 -07:00
Ralph Castain
9dbc69df0f Stop an ugly infinite loop caused by continual re-opening of the opal if framework. 2015-03-24 17:50:14 -07:00
Rolf vandeVaart
dfb7e00ef5 Make sure context is still around when doing some other cleanup 2015-03-24 16:47:40 -04:00
Nathan Hjelm
88072f9b8b ompi/datatype: fix subarray datatype
The subarray datatype was not packing/unpacking correctly. This was
leading to wrong results whenever the lb of the subarray datatype was
non-zero.

I tracked the issue to the use of ompi_datatype_create_resized. This
function simply duplicates the old datatype and sets the lb and
extent. This is unfortunately insufficent for the pack/unpack
functions which use the loop end first element offset NOT the lb. This
offset is 0 in the resized datatype. Once ompi_datatype_create_resized
has been fixed this commit should be reverted.

Fixes #380.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-03-24 14:33:10 -06:00