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Brice Goglin
5427b33caf hwloc: debug: fix an overzealous assertion about the parent cpuset vs its children
When I/O are attached under a PU, removing the children's cpusets from
the parent cpuset doesn't give 0, it gives the PU cpuset.
The assertion fails on single-pu machines with I/O when --merge is given,
only one PU remains with I/O under it.

But if we insert Misc by cpuset under PU, it gives 0 as expected.

Fix the assertion accordingly.

Thanks to Thomas Van Doren for reporting the issue.

(cherry picked from commit open-mpi/hwloc@45c94c336d)
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2015-03-27 05:14:15 -07:00
Brice Goglin
9b59d532fc hwloc: cpuid-x86: Fix duplicate asm labels in case of heavy inlining on x86-32
hwloc_x86_discover() calls hwloc_look_x86() twice, which calls hwloc_have_x86_cpuid().
If everything gets inlined, the asm label inside hwloc_have_x86_cpuid()
is duplicated.
Use a local label with f annotation in jumps to avoid the problem.

Thanks to Thomas Van Doren for reporting the issue (found with gcc -m32).

(cherry picked from commit open-mpi/hwloc@50e447f5bc)
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2015-03-27 05:14:15 -07:00
Brice Goglin
86a536ca58 hwloc: x86 and OSF: Don't forget to set NUMA node nodeset
x86: Not critical since BSDs that use this backend have no membind support,
but better fix it for uniformization.
(cherry picked from commit open-mpi/hwloc@a431361c7d)

OSF: Looks like nobody ever tried to play with memory binding on OSF/Tru64.
(cherry picked from commit open-mpi/hwloc@2d6c73356d)

Conflicts:
	NEWS

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2015-03-27 05:14:15 -07:00
Brice Goglin
db5bc72496 hwloc: API: clearly state that os_index isn't unique while logical_index is
(cherry picked from commit open-mpi/hwloc@6c75302ab2)

Conflicts:
	opal/mca/hwloc/hwloc191/hwloc/include/hwloc.h

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2015-03-27 05:14:15 -07:00
Brice Goglin
a636790604 hwloc: opal/mca/hwloc/hwloc191/hwloc/NEWS update
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2015-03-27 05:13:41 -07:00
Brice Goglin
7c96aecfaf hwloc: errors: improve the advice to send hwloc-gather-topology files in the OS error message
(cherry picked from commit open-mpi/hwloc@f77aa01b3c)
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2015-03-27 05:13:41 -07:00
Brice Goglin
d5f8c89527 hwloc: configure: fix the check for X11/Xutil.h
At least some solaris enforce the need to #include X11/Xlib.h first.

Thanks to Siegmar Gross for reporting the issue.

(cherry picked from commit open-mpi/hwloc@005a7e89b6)
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2015-03-27 05:13:01 -07:00
Brice Goglin
50b035dddb hwloc: misc.h: Fix hwloc_strncasecmp() with some icc
tolower needs <ctype.h>

Thanks to Ralph Castain for reporting the failure.

(cherry picked from commit open-mpi/hwloc@038c372a58)
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2015-03-27 05:10:57 -07:00
Brice Goglin
6764413aa3 hwloc: misc.h: Fix hwloc_strncasecmp() build under strict flags on BSD
strncasecmp() needs <strings.h>

Thanks to Pavan Balaji for reporting the failure.

(cherry picked from commit open-mpi/hwloc@37439c4801)
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2015-03-27 05:10:46 -07:00
Brice Goglin
6b0011f138 hwloc: v1.9.1 released, doing 1.9.2rc1 now
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2015-03-27 05:06:15 -07:00
Jeff Squyres
a85edb8ad4 libfabric: update to Github libfabric 0d7daf720f04 2015-03-26 14:40:46 -07:00
Elena
90f5b2bb84 Introduce -tune command line option to set env vars and mca params from file 2015-03-26 18:33:53 +02:00
Ralph Castain
1b24536941 Allow for different security domains. Let the initiator of the connection determine the method to be used - if the receiver cannot support it, then that's an error that will cause the connection attempt to fail. 2015-03-25 13:22:01 -07:00
Ralph Castain
9dbc69df0f Stop an ugly infinite loop caused by continual re-opening of the opal if framework. 2015-03-24 17:50:14 -07:00
Rolf vandeVaart
dfb7e00ef5 Make sure context is still around when doing some other cleanup 2015-03-24 16:47:40 -04:00
Ralph Castain
ed5d10b816 Somehow slipped by - ensure we correctly count the cores 2015-03-19 17:56:18 -07:00
Ralph Castain
43a3baad5e Ensure we use the first compute node's topology for mapping
Don't filter the topology by cpuset if you are mpirun until you know that no other compute nodes are involved. This deals with the corner case where mpirun is executing on a node of different topology from the compute nodes.

Simplify - don't mandate that all cpus in the given cpuset be present on every node. We can then run everything thru the filter as before, which ensures that any procs run on mpirun are also contained within the specified cpuset.

Correctly count the number of available PUs under each object when given a cpuset

Fix the default binding settings, and correctly count PUs when no cpuset is given

Ensure the binding policy gets set in all cases
2015-03-19 16:30:36 -07:00
Nathan Hjelm
ccba8ce856 Merge pull request #457 from hjelmn/mpit_fixes
mca/base: fix bugs in framework deregistration/re-registration
2015-03-18 08:37:49 -06:00
Ralph Castain
d7d8ae46ed We no longer pass the RML URI for procs launched via mpirun as the daemon has no need for that info. 2015-03-17 06:10:20 -07:00
Mike Dubman
7640507438 Merge pull request #472 from miked-mellanox/topic/fix_compile_warn
btl/openib: fix compiler warning, by HalR
2015-03-13 14:06:07 +02:00
Jeff Squyres
4ab9e67832 hwloc external: portability updates
Change "test -a" to "&& test", and change foo="$bar" to foo=$bar.  No
substantive code changes.
2015-03-13 04:40:09 -07:00
Jeff Squyres
4d63c88ed1 hwloc external: whitespace cleanup, no code changes 2015-03-13 04:40:05 -07:00
Mike Dubman
00784ae3ba btl/openib: fix compiler warning, by HalR 2015-03-13 13:17:23 +02:00
Todd Kordenbrock
9350b06f7d btl-portals4: fix compiler warnings 2015-03-12 20:34:04 -05:00
Jeff Squyres
65a0e041ac dl: need to use LIBADD, not LIBS
When we use LIBADD for static libraries, the dependent libraries get
propagated properly.  For example, the dl/dlopen component will almost
certainly require the -ldl library; when using LIBS, that doesn't get
propagated elsewhere in the tree, but when using LIBADD, it does
(e.g., when linking opal_wrapper_compiler).
2015-03-12 15:01:14 -07:00
Ryan Grant
6f76984a3c Merge pull request #470 from tkordenbrock/topic/update-portals4-to-btl3
btl-portals4: implement the BTL 3.0 interface
2015-03-12 15:34:05 -06:00
Jeff Squyres
a1daa39425 libfabric: update to Github lifabric 90ac5a258418e
Update to latest upstream Github lifabric in order to fix some usnic
bugs.
2015-03-12 13:23:32 -07:00
Todd Kordenbrock
d1656347c8 btl-portals4: implement the BTL 3.0 interface 2015-03-12 14:19:44 -05:00
adrianreber
714d9aa67e Merge pull request #348 from adrianreber/topic/orte_cr_continue_like_restart
Topic/orte cr continue like restart
2015-03-12 14:54:02 +01:00
Nathan Hjelm
fd78491768 Merge pull request #451 from elenash/master
fix: mca_base_env_var mca parameter is never handled if it's set from am...
2015-03-11 09:54:25 -06:00
Nathan Hjelm
ce6caab2a7 Merge pull request #463 from hjelmn/cuda_async
btl/openib: cuda: fix CUDA-aware support with async copy
2015-03-11 09:52:48 -06:00
Jeff Squyres
c61dd4d56f usnic: each err eq entry reports *1* completion
Actually, the return from fi_eq_readerr() only indicates a *single*
error completion (not err_entry.data completions).
2015-03-11 08:07:20 -07:00
Ralph Castain
2de5cd6e5f Ensure we don't install the libevent internal headers 2015-03-11 07:35:20 -07:00
Nathan Hjelm
395635f017 Merge pull request #461 from hjelmn/btl_openib_cleanup
btl/openib: remove derived btl segment type
2015-03-11 08:20:41 -06:00
Jeff Squyres
9c926e5e82 usnic: add more commments/explanation about error cases
If we really get a catastrophic error from a libfabric call, don't
bother trying to continue (because data has been corrupted and there's
nothing sane left to do).  Just call opal_btl_usnic_exit() (which
tries to call the PML error callback, but we're so early in the
module_init process that this likely hasn't been setup yet, so the job
will likely abort).
2015-03-11 07:16:28 -07:00
Jeff Squyres
51583789fb usnic: re-indent some show_help code
Nothing too substantial here, but two of the messages moved from
"libfabric API failed" to "internal error during init", just to be a
bit more descriptive.
2015-03-11 07:15:28 -07:00
Jeff Squyres
1b836d784c usnic: subtract number of errored insertions from loop count
When we get errors, the entry.data field tells us how many errors are
being reported.  So decrement the loop count variable by that much.

This fixes CSCut30441.
2015-03-11 07:13:10 -07:00
Adrian Reber
f45dd069bd FT: fix compilation using --with-ft (1/5)
Enabling the FT code breaks compilation (again). This series
tries to fix the compiler errors. This is again only fixing
the compiler errors without any warranty that the result
might actually support FT again.

This first patch moves orte_cr_continue_like_restart from ORTE
to opal_cr_continue_like_restart in OPAL. This only leaves three
calls from OPAL to ORTE in the FT code. As it is not yet 100%
clear how to handle these calls the code orte_sstore.set_attr()
has been #ifdef'd out for now.
2015-03-11 14:23:33 +01:00
Nathan Hjelm
b308afa8fd btl/openib: remove derived btl segment type
The derived segment type (btl_openib_segment_t) was intended to store
the registration info needed for put and get. In BTL 3.0 this is no
longer required. I intended to remove this type as part of
open-mpi/ompi@74f1af4548 .

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-03-10 14:41:15 -06:00
Nathan Hjelm
3d32dbd793 btl/openib: cuda: fix CUDA-aware support with async copy
This commit should resolve an issue seen with CUDA-aware support. The
problem came in with BTL 3.0. Before 3.0 the size of the copy was
stored in the incoming segment's des_remote_count field. This field
does not exist in BTL 3.0 so I stored the value in the
des_segment_count field. This caused problems with the cuda support
code. To fix the issue the endpoint pointer is now stored in the in
fragment's endpoint pointer which free's up the segment's des_cbdata
pointer for storing the transfer size.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-03-10 14:38:12 -06:00
Jeff Squyres
cbd99d5f60 libfabric: update to Github upstream 1b4bb2285b
Get a usnic bug fix.
2015-03-10 12:09:02 -07:00
Jeff Squyres
d97551bdb1 usnic: endpoint type hint moved to a sub-struct
Update to match new libfabric API/structure change.
2015-03-10 09:47:41 -07:00
Jeff Squyres
1a1be2efa0 libfabric: update to Github upstream 7095f3dc 2015-03-10 09:47:40 -07:00
Jeff Squyres
afec1454f5 usnic: only setup the connectivity checker if we have modules
If we ended up with no modules (e.g., all usnic devices were
excluded), there was a race condition in that the connectivity agent
could tear down its local socket before one or more of the local
clients saw it.  Therefore, the local clients would timeout waiting
for the socket to appear.

So move the connectivity checker init later in the bootstrapping
process (it *must* be setup before module_init()), and have it only
invoked if we actually ended up with one or more modules.
2015-03-10 07:43:20 -07:00
Jeff Squyres
06accb721c usnic: ensure to free all resources if no usnic BTLs found
If all usnic devices are excluded, then we need to ensure the error
path includes freeing the filter.

This was Coverity CID 1288085
2015-03-10 07:43:20 -07:00
Jeff Squyres
8fef4e865f dl dlopen: fix use-after-free
Re-structure the loop looking for duplicates a little so that we only
have a single free of the string that happens regardless of whether we
found a duplicate or not.

This was Coverity CID 1288090
2015-03-10 07:43:20 -07:00
Jeff Squyres
3efb5f56ae dl dlopen: ensure dirs is not NULL
opal_argv_split() may have returned NULL.

This was Coverity CID 1288088
2015-03-10 07:43:20 -07:00
Jeff Squyres
86968dcdda dl dlopen: fix resource leak
closedir() was one block higher than it should have been.

This was Coverity CID 1288087.
2015-03-10 07:43:20 -07:00
Jeff Squyres
546ad3f060 dl dlopen: free resources upon error
Ensure to take the right path out upon errors (that will free any
pending resources).

This was Coverity CID 1288086
2015-03-10 07:43:19 -07:00
Rolf vandeVaart
49b5eb6c91 Fix missing initialization of variable 2015-03-10 10:33:27 -04:00