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Thananon Patinyasakdikul
390d72addd
Merge pull request #4885 from davideberius/spc_pr
Initial Software-based Performance Counters PR
2018-06-12 14:04:49 -07:00
David Eberius
d377a6b6f4 Added Software-based Performance Counters driver code along with several counters.
This code is the implementation of Software-base Performance Counters as described in the paper 'Using Software-Base Performance Counters to Expose Low-Level Open MPI Performance Information' in EuroMPI/USA '17 (http://icl.cs.utk.edu/news_pub/submissions/software-performance-counters.pdf).  More practical usage information can be found here: https://github.com/davideberius/ompi/wiki/How-to-Use-Software-Based-Performance-Counters-(SPCs)-in-Open-MPI.

All software events functions are put in macros that become no-ops when SOFTWARE_EVENTS_ENABLE is not defined.  The internal timer units have been changed to cycles to avoid division operations which was a large source of overhead as discussed in the paper.  Added a --with-spc configure option to enable SPCs in the Open MPI build.  This defines SOFTWARE_EVENTS_ENABLE.  Added an MCA parameter, mpi_spc_enable, for turning on specific counters.  Added an MCA parameter, mpi_spc_dump_enabled, for turning on and off dumping SPC counters in MPI_Finalize.  Added an SPC test and example.

Signed-off-by: David Eberius <deberius@vols.utk.edu>
2018-06-11 22:48:16 -04:00
Yossi Itigin
fd12540751
Merge pull request #5227 from hoopoepg/topic/pml-ucx-hang-on-finalize
PML/UCX: fixed hand on MPI_Finalize
2018-06-08 13:19:49 +03:00
Sergey Oblomov
0a8261f3b0 PML/UCX: fixed hand on MPI_Finalize
fixes issue https://github.com/openucx/ucx/issues/2656

added flush for worker object to complete all pending operations

Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2018-06-05 17:22:03 +03:00
Jeff Squyres
35438ae9b5 mpi/finalized: revamp INITIALIZED/FINALIZED
Per MPI-3.1:8.7.1 p361:11-13, it's valid for MPI_FINALIZED to be
invoked during an attribute destruction callback (e.g., during the
destruction of keyvals on MPI_COMM_SELF during the very beginning of
MPI_FINALIZE).  In such cases, MPI_FINALIZED must return "false".

Prior to this commit, we hung in FINALIZED if it were invoked during
a COMM_SELF attribute destruction callback in FINALIZE.  See
https://github.com/open-mpi/ompi/issues/5084.

This commit converts the MPI_INITIALIZED / MPI_FINALIZED
infrastructure to use a single enum (ompi_mpi_state, set atomically)
to represent the state of MPI:

- not initialized
- init started
- init completed
- finalize started
- finalize past COMM_SELF destruction
- finalize completed

The "finalize past COMM_SELF destruction" state is what allows us to
return "false" from MPI_FINALIZED before COMM_SELF has been fully
destroyed / all attribute callbacks have been invoked.

Since this state is checked at nearly every MPI API call (to see if
we're outside of the INIT/FINALIZE epoch), care was taken to use
atomics to *set* the ompi_mpi_state value in ompi_mpi_init() and
ompi_mpi_finalize(), but performance-critical code paths can simply
read the variable without needing to use a slow call to an
opal_atomic_*() function.

Thanks to @AndrewGaspar for reporting the issue.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-06-01 13:36:29 -07:00
Sergey Oblomov
5ec26914a6 PML/UCX: do not set offset on ordered data recv
Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2018-05-21 19:40:07 +03:00
Sergey Oblomov
19607daa32 PML/UCX: create convertor clone instead of stack reset
Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2018-05-17 16:39:13 +03:00
Sergey Oblomov
7c5de01c57 PML/UCX: reset converter stack on unordered messages
Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2018-05-17 13:11:02 +03:00
bosilca
2ab628b92e
Merge pull request #5074 from bosilca/topic/remove_warnings
Remove warnings identified by clang.
2018-05-15 11:15:23 -04:00
Yossi Itigin
385f38ab4e ucx: improve error messages during connection establishment
Also, unite common code calling ucp_ep_create()

Signed-off-by: Yossi Itigin <yosefe@mellanox.com>
2018-04-30 15:45:05 +03:00
George Bosilca
6ff11267fb
Remove warnings identified by clang.
Plus minor spacing and indentation issues.

Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
2018-04-14 17:14:12 -04:00
Jeff Squyres
c3adcb05eb Miscellaneous compiler warnings fixes
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-03-23 11:45:30 -07:00
Thananon Patinyasakdikul
09cba8b30b pml/ob1: fixed out of sequence bug.
This commit fixes #4795

- Fixed typo that sometimes causes deadlock in change of protocol.
- Redesigned out of sequence ordering and address the overflow case of
  sequence number from uint16_t.

Signed-off-by: Thananon Patinyasakdikul <tpatinya@utk.edu>
2018-02-27 13:49:40 -05:00
Jeff Squyres
e7f91f8068
Merge pull request #4527 from clementFoyer/osc-no-includes
Remove inter-dependencies between OSC modules.
2018-02-09 15:49:56 -05:00
Nathan Hjelm
da9f833f4a pml/ob1: ignore the eager limit of RDMA-only btls
This commit fixes a flaw in the eager limit check in pml/ob1. The
check was incorrectly checking if RDMA-only BTLs (BTLs without the
send flag) has a valid eager limit. This commit fixes the check by
adding an additional check for the send flag on the BTL module.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-02-07 12:42:44 -07:00
Clement Foyer
f5b4fc05f8 Remove inter-dependencies between OSC modules.
The osc monitoring component needed to include other OSC components
header in order to be able tu access communicator through the
component specific ompi_osc_*_module_t structures. This commit remove
the dependency, and resolve the issue #4523.

Extend the common monitoring API.

  * Now it's possible to translate from local rank to world rank from
    both the communicator and the group.
  * Remove useless hashtable as we directly use the w_group contained
    in window structure.

Add automatic generation at config time.

The templates are expanded at configure time. It creates a new header
file that generates all the variables/functions needed. Adding this
during the autogen automagicaly generates for each of the available
modules the proper functions.

Only keep a generated argv-style array.

Following Jeff's advice, the configure.m4 file generate a simple array
of module variables to be iterated over to find the proper module.

Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
2018-02-07 11:52:00 +00:00
Sergey Oblomov
7a5811d0a8 request/state: update state for canceled request
- fixed issue in set state for canceled request

Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2018-01-29 18:26:20 +02:00
Yossi Itigin
f2851fd502
Merge pull request #4724 from alex-mikheev/topic/ucx_as_default
ompi/oshmem: ucx is selected over yalla/ikrit by default
2018-01-17 17:41:49 +02:00
Alex Mikheev
640e945b9c ompi: pml/ucx: blocking send using ucp_tag_send_nbr
Signed-off-by: Alex Mikheev <alexm@mellanox.com>
2018-01-17 15:54:18 +02:00
Alex Mikheev
ae326546f4
ompi/oshmem: ucx is selected over yalla/ikrit by default
Signed-off-by: Alex Mikheev <alexm@mellanox.com>
2018-01-17 15:08:04 +02:00
Alex Mikheev
e7bf0617cf
ompi: pml ucx: improve recv latency
Signed-off-by: Alex Mikheev <alexm@mellanox.com>
2017-12-26 16:24:16 +02:00
Howard Pritchard
2233e44848
Merge pull request #4534 from hppritcha/topic/fix_a_segv_in_request
pml/cm: check for request comp. before completing bsend
2017-12-04 09:09:41 -07:00
Nathan Hjelm
1282e98a01 opal/asm: rename existing arithmetic atomic functions
This commit renames the arithmetic atomic operations in opal to
indicate that they return the new value not the old value. This naming
differentiates these routines from new functions that return the old
value.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2017-11-30 10:41:22 -07:00
Nathan Hjelm
647b40f3f2
Merge pull request #4442 from bosilca/topic/ob1_pvar
Topic/ob1 pvar
2017-11-29 09:31:07 -07:00
Howard Pritchard
3285325884 pml/cm: check for request comp. before completing bsend.
Turns out there are edge cases where an MTL's isend
method may end up marking a send request complete prior
to returning to the CM code.  The would end up causing
problems in the bsend path since the ompi_request_complete
would end up getting invoked a second time on this request.
This ended up causing segfaults, etc. in ompi_request_complete .

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2017-11-27 12:27:43 -07:00
bosilca
3f43e2c8df
Merge pull request #4419 from thananon/pr_newob1
pml/ob1: match callback will now queue wrong sequence frag and return.
2017-11-10 20:10:53 -05:00
George Bosilca
409638bdf4 Keep the out-of-sequence fragment ordered.
Rework the logic to handle the out-of-sequence fragments on the receiver
side. A large number of OOS messages are still arriving even in single
threaded scenarios.

Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
2017-11-08 14:27:13 -05:00
Thomas Naughton
86bb6f8bac
Merge pull request #4444 from naughtont3/tjn-fix-plm-monitoring-configury
configury: single quote to avoid trouble with BSD
2017-11-08 10:56:37 -05:00
Thomas Naughton
c5dc41ee1a configury: single quote to avoid trouble with BSD
Signed-off-by: Thomas Naughton <naughtont@ornl.gov>
2017-11-03 11:34:28 -04:00
George Bosilca
d261282029
OB1 pvars should be linked with the OB1 component.
If not the pvars will remain valid after the OB1 PML is unloaded, and
any access will segfault (the callbacks associated with the pvar will
point to the memory of the dlclosed module).

Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
2017-11-03 01:18:26 -04:00
bosilca
3e1f771045
Merge pull request #4403 from naughtont3/tjn-fix-plm-monitoring-configury
fix PML monitoring configury to compile DSOs
2017-11-02 19:08:20 -04:00
George Bosilca
b2b3da3046
Do not access the frag after returning it.
Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
2017-10-31 16:39:23 -04:00
Thananon Patinyasakdikul
e3b267a8fe pml/ob1: match callback will now queue wrong sequence frag and return.
In multithreaded case, it is expensive to release the lock, call the slow match
and retake the lock again just to queue the frag. This patch will eliminate number of
lock taken by queueing the frag right away and return.

Signed-off-by: Thananon Patinyasakdikul <tpatinya@utk.edu>
2017-10-30 12:01:50 -04:00
Thomas Naughton
86d282d6dd fix PML monitoring configury to compile DSOs
Signed-off-by: Thomas Naughton <naughtont@ornl.gov>
2017-10-26 15:53:11 -04:00
Matias Cabral
d9b2c94d4a Merge pull request #4286 from aravindksg/master
Use opal_show_help to warn about PSM2_CUDA envvar setting
2017-10-01 11:10:19 -07:00
George Bosilca
2a2db13b32
Gracefully deal with a get returning 1 (complete right away).
Kudos to @EmmanuelBRELLE for spotting it.

Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
2017-10-01 02:24:02 -04:00
Aravind Gopalakrishnan
f8a2b7f6bf Use opal_show_help to warn about PSM2_CUDA envvar setting
If Open MPI is configured with CUDA, then user also should be using a CUDA build of
PSM2 and therefore be setting PSM2_CUDA environment variable to 1 while using
CUDA buffers for transfers. If we detect this setting to be missing, force set
it. If user wants to use this build for regular (Host buffer) transfers, we
allow the option of setting PSM2_CUDA=0, but print a warning
message to user that it is not a recommended usage scenario.

Signed-off-by: Aravind Gopalakrishnan <Aravind.Gopalakrishnan@intel.com>
2017-09-29 17:04:10 -07:00
George Bosilca
64bff0e326
Disable monitoring if we compile statically.
Protect all components against compilation on static builds.

Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
2017-09-25 12:18:23 -04:00
Clément FOYER
f334607c34
Simplify the communicator's name caching management (#6)
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
2017-09-25 12:18:23 -04:00
bosilca
dc538e9675 Merge pull request #1177 from bosilca/topic/large_msg
Topic/large msg
2017-09-05 13:30:19 -04:00
Gilles Gouaillardet
af8242a121 pml/ob1: have memchecker make recv buffer defined again when mca_pml_ob1_recv completes
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-09-04 11:18:05 +09:00
Aravind Gopalakrishnan
2e83cf15ce Add support for GPU buffers for PSM2 MTL
PSM2 enables support for GPU buffers and CUDA managed memory and it can
directly recognize GPU buffers, handle copies between HFIs and GPUs.
Therefore, it is not required for OMPI to handle GPU buffers for pt2pt cases.
In this patch, we allow the PSM2 MTL to specify when
it does not require CUDA convertor support. This allows us to skip CUDA
convertor init phases and lets PSM2 handle the memory transfers.

This translates to improvements in latency.
The patch enables blocking collectives and workloads with GPU contiguous,
GPU non-contiguous memory.

Signed-off-by: Aravind Gopalakrishnan <Aravind.Gopalakrishnan@intel.com>
2017-09-01 16:59:03 -07:00
George Bosilca
866899e836
Always abide to the RDMA pipeline limit.
Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
2017-09-01 18:52:48 -04:00
George Bosilca
050bd3b6d7
Make the pipeline depth an int instead of a size_t. While
they are supposed to be unsigned, casting them to a signed
value for all atomic operations is as errorprone as handling
them as signed entities.

Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
2017-09-01 18:52:48 -04:00
Yossi Itigin
14a93a5992 pml_ucx: fix tag/context_id layout and upper bounds.
Signed-off-by: Yossi Itigin <yosefe@mellanox.com>
2017-08-27 17:15:48 +03:00
Joshua Hursey
e1d079544b mca: Dynamic components link against project lib
* Resolves #3705
 * Components should link against the project level library to better
   support `dlopen` with `RTLD_LOCAL`.
 * Extend the `mca_FRAMEWORK_COMPONENT_la_LIBADD` in the `Makefile.am`
   with the appropriate project level library:
```
MCA components in ompi/
       $(top_builddir)/ompi/lib@OMPI_LIBMPI_NAME@.la
MCA components in orte/
       $(top_builddir)/orte/lib@ORTE_LIB_PREFIX@open-rte.la
MCA components in opal/
       $(top_builddir)/opal/lib@OPAL_LIB_PREFIX@open-pal.la
MCA components in oshmem/
       $(top_builddir)/oshmem/liboshmem.la"
```

Note: The changes in this commit were automated by the script in
the commit that proceeds it with the `libadd_mca_comp_update.py`
script. Some components were not included in this change because
they are statically built only.

Signed-off-by: Joshua Hursey <jhursey@us.ibm.com>
2017-08-24 11:56:16 -04:00
Joshua Ladd
c27beea3a1 Merge pull request #3962 from karasevb/ucx_detect
configure: detect UCX support by default
2017-08-03 16:33:57 -04:00
KAWASHIMA Takahiro
ebc4eb347c Merge pull request #3701 from kawashima-fj/pr/non-pml-persistent
ompi/request: Support non-PML persistent requests
2017-07-31 02:36:17 -05:00
Boris Karasev
d917d54ddc configure: detect UCX support by default
Adds detecting UCX from following paths: "/usr /usr/local /opt/ucx"

Signed-off-by: Boris Karasev <karasev.b@gmail.com>
2017-07-25 23:48:49 +03:00
Gilles Gouaillardet
1b46fe2d9a pml/ob1: fix mca_pml_ob1_progress_needed usage
correctly use OPAL_ATOMIC_ADD32() that returns the *new* value
and *not* the previous one.

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-07-18 09:30:57 +09:00