check for providing a data representation that is actually supported
by ompio.
Add also one check for a non-NULL pointer in mpi/c/file_set_view
for the data representation.
Also fixes parts of issue #5643
Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
this ensures that all processes are done modifying a file
before syncing. Fixes an error in the testmpio testsuite.
Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
return MPI_ERR_ARG if the size of the fileview is not a
multiple of the size of the etype provided.
Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
return MPI_ERR_ACCESS if the user tries to read from a file
that was opened using MPI_MODE_WRONLY
return MPI_ERR_READ_ONLY if the user tries to write a file
that was opened using MPI_MODE_RDONLY
Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
This commit fixes a deadlock that can occur when using a TL that
supports the connect to endpoint model. The deadlock was occurring
while processing an incoming connection requests. This was done from
an active-message callback. For some unknown reason (at this time)
this callback was sometimes hanging. To avoid the issue the connection
active-message is saved for later processing.
At the same time I cleaned up the connection code to eliminate
duplicate messages when possible.
This commit also fixes some bugs in the active-message send path:
- Correctly set all fragment fields in prepare_src.
- Fix bug when using buffered-send. We were not reading the return
code correctly (which is in bytes). This resulted in a message
getting sent multiple times.
- Don't try to progress sends from the btl_send function when in an
active-message callback. It could lead to deep recursion and an
eventual crash if we get a trace like
send->progress->am_complete->ob1_callback->send->am_complete...
Closes#5820Closes#5821
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
(cherry picked from commit 707d35deeb62a93ea8a3806d07e07e3a96c51d19)
Signed-off-by: Nathan Hjelm <hjelmn@me.com>
There was a race condition in opal_free_list_get. Code throughout the
Open MPI codebase was assuming that a NULL return from this function
was due to an out-of-memory condition. In some cases this can lead to
a fatal condition (MPI_Irecv and MPI_Isend in pml/ob1 for
example). Before this commit opal_free_list_get_mt looked like this:
```c
static inline opal_free_list_item_t *opal_free_list_get_mt (opal_free_list_t *flist)
{
opal_free_list_item_t *item =
(opal_free_list_item_t*) opal_lifo_pop_atomic (&flist->super);
if (OPAL_UNLIKELY(NULL == item)) {
opal_mutex_lock (&flist->fl_lock);
opal_free_list_grow_st (flist, flist->fl_num_per_alloc);
opal_mutex_unlock (&flist->fl_lock);
item = (opal_free_list_item_t *) opal_lifo_pop_atomic (&flist->super);
}
return item;
}
```
The problem is in a multithreaded environment is *is* possible for the
free list to be grown successfully but the thread calling
opal_free_list_get_mt to be left without an item. The happens if
between the calls to opal_lifo_push_atomic in opal_free_list_grow_st
and the call to opal_lifo_pop_atomic other threads pop all the items
added to the free list.
This commit fixes the issue by ensuring the thread that successfully
grew the free list **always** gets a free list item.
Fixes#2921
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
(cherry picked from commit 5c770a7becc496f63b9f9a59151206236416f4f4)
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
Thanks to @hjelmn for debugging it and providing the patch
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
(cherry picked from commit efa8bcc17078c89f1c9d6aabed35c90973a469bf)
(cherry picked from commit 647a760b7e24194b37571a8245d8d39ed202e75b)
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
It is apparently possible for different instances of the same UCT
transport to have different limits (max short put for example). To
account for this we need to store the attributes per TL context not
per TL. This commit fixes the issue.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
(cherry picked from commit 6ed68da870c391d88575dc027a3de4826a77f57e)
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
While we require C99 to build Open MPI, we do not require C99 to build
user MPI applications. As such, we shouldn't have C99-style comments
(i.e., "//"-style) in mpi.h.in.
Thanks to @AdamSimpson for reporting the issue.
This commit simply converts a //-style comment to a /**/-style
comment. No code or logic changes.
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
(cherry picked from commit f4b3ccabf726eaec6d39cbcff809882da55ae1e5)
Make sure all pending communications are done on all ranks before
closing the window. This way it will be safe to close the endpoints when
closing the component.
(picked from master b8e1af6)
Signed-off-by: Yossi Itigin <yosefe@mellanox.com>
This commit updates the uct btl to change the transports parameter
into a priority list. The dc_mlx5, rc_mlx5, and ud transports to the
priority list. This will give better out of the box performance for
multi-threaded codes beacuse the *_mlx5 transports can avoid the mlx5
lock inside libmlx5_rdmav2.
This commit also fixes a number of leaks and a possible deadlock when
using RDMA.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
(cherry picked from commit 39be6ec15c202d31423476f09e70199453d25adc)
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
OpenJDK 11 changed the default javadoc output HTML version to HTML 5
from HTML 4.01. It causes an error on building Open MPI configured
with `--enable-mpi-java` (default: disable). This fix is compatible
with older OpenJDK.
I don't know whether this problem exists with other vender's JDKs.
But this fix should be compatible with other JDKs because the new
syntax is used in other places in the same file.
Thanks to Siegmar Gross for the bug report.
Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
(cherry picked from commit b491b454dc304a72c03970326880fbd01641a3d3)
A typo inadvertantly crept in to e836dbd506. Add the extra '-' to
make it correctly search for --with-*=internal.
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
(cherry picked from commit 7675956b8fd739b150d3bdd14c265fd728786201)
Ignore with-hwloc=internal or external as those are meaningless to pmix
(will upstream)
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
(cherry picked from commit c498a7e77a377ddc3a7bcc26ea072627a33cb470)
If we are using the internal PMIx component and the embedded library fails to configure, then fail - don't silently fail to build and then fail in execution
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
(cherry picked from commit f379ba9c8e5ce17641937c351ab46e4b4a82446c)
Our components that have a --with-foo configure option won't know what
to do with a value of "internal". This scenario only occurs with hwloc
and libevent, both of which are statically contained in libopen-pal
Thanks to @jsquyres for the diff
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
(cherry picked from commit e836dbd506502c797f5bff2f9761510fad4858cd)
