- It is possible to leave a byslot/bynode routine and have cur_node_item be NULL, so check for that.
- After we do an allocation where the user has provided a map (i.e. with --host), cur_node_item is pointing into the map list, not the global list. Change it to point into the global list.
This commit was SVN r12232.
Also, I am no longer seeing any issue with the child job spawning its own daemons - this appears to be fixed. We still don't reuse the existing daemons, however, but that will come.
This commit was SVN r12229.
This patch will cause a problem for cnos, however, as there we want to specifically tell the backends to be "null". I'm working on that issue.
This commit was SVN r12225.
possible things contained in the conditional like other rules are (for
example, a SOURCES rule in a conditional automatically has its files
added to the dist rules, even if that conditional isn't tru when
make dist occurs). So the man files weren't in the tarball.
Put the EXTRA_DIST with the files explicitly listed outside any conditionals
so the man pages always end up in the tarball.
This commit was SVN r12220.
- Simplified the logic of the ras modules by moving the attribute handling into the base allocation function. This allows us to decide how to allocate based on the situation, and solves some of the allocation problems we were having with comm_spawn.
- moved the proxy component into the base. This was done because we always want to call the proxy functions if we are not on a HNP regardless of the attributes passed.
- Got rid of the hostfile component. What little logic was in it was moved into the base to deal with other circumstances. The hostfile information is currently being propagated into the registry by the RDS, so we just use what is already in the registry.
- renamed some slurm function so that they have the proper prefix. Not strictly necessary as they were static, but it makes debugging much easier.
- fixed a buglet in the round_robin rmaps where we would return an error when really no error occured.
I tried to make proper corrections to all the ras modules, but I cannot test all of them.
This commit was SVN r12202.
they might require special tools (not sure if sed with multiple -e
arguments is totally portable)
- ignore the opalcc.1 man page. Couldn't do this in the previous
man page commit (r12192) because I was removing opalcc.1 in that
commit.
This commit was SVN r12194.
The following SVN revision numbers were found above:
r12192 --> open-mpi/ompi@581a4b0a4e
Update the mapper so it correctly points to the next node to be used if we are mapping by slots. As it was, if we had an app_context that used only one slot on a node, the next app_context would start on the next node - leaving a blank slot in-between.
This commit was SVN r12193.
- Only install opal{cc,c++} and orte{cc,c++} if configured with
--with-devel-headers. Right now, they are always installed, but
there are no header files installed for either project, so there's
really not much way for a user to actually compile an OPAL / ORTE
application.
- Drop support for opalCC and orteCC. It's a pain to setup all the
symlinks (indeed, they are currently done wrong for opalCC) and
there's no history like there is for mpiCC.
- Change what is currently opalcc.1 to opal_wrapper.1 and add some
macros that get sed'ed so that the man pages appear to be
customized for the given command.
- Install the wrapper data files even if we compiled with
--disable-binaries. This is for the use case of doing multi-lib
builds, where one word size will only have the library built, but
we need both set of wrapper data files to piece together to
activate the multi-lib support in the wrapper compilers.
This commit was SVN r12192.
Modify the mapper to better bookmark its stopping place each time, and to pick up the next time from there. This needs to be validated on a multi-node system.
Fix a major memory corruption problem in the registry put/get functions that was doing multiple free's. Not sure how valgrind missed this one, though it only occurred in specific circumstances (such as comm_spawn).
This commit was SVN r12179.
This change does a couple of things:
1. Since the USE_PARENT_ALLOC attribute is a directive about regarding allocation of resources to a job, it more properly should be an attribute of the RAS. Change the name to reflect that and move the attribute define to the ras_types.h file.
2. Add the attributes list to the RMAPS map_job interface. This provides us with the desired flexibility to dynamically specify directives for mapping. The system will - in the absence of any attribute-based directive - default to the values provided in the MCA parameters (either from environment or command-line interface).
This commit was SVN r12164.
In this implementation, we begin mapping on the first node that has at least one slot available as measured by the slots_inuse versus the soft limit. If none of the nodes meet that criterion, we just start at the beginning of the node list since we are oversubscribed anyway.
Note that we ignore this logic if the user specifies a mapping - then it's just "user beware".
The real root cause of the problem is that we don't adjust sched_yield as we add processes onto a node. Hence, the node becomes oversubscribed and performance goes into the toilet. What we REALLY need to do to solve the problem is:
(a) modify the PLS components so they reuse the existing daemons,
(b) create a way to tell a running process to adjust its sched_yield, and
(c) modify the ODLS components to update the sched_yield on a process per the new method
Until we do that, we will continue to have this problem - all this fix (and any subsequent one that focuses solely on the mapper) does is hopefully make it happen less often.
This commit was SVN r12145.
Fix the problem observed by multiple people that comm_spawned children were (once again) being mapped onto the same nodes as their parents. This was caused by going through the RAS a second time, thus overwriting the mapper's bookkeeping that told RMAPS where it had left off.
To solve this - and to continue moving forward on the ORTE development - we introduce the concept of attributes to control the behavior of the RM frameworks. I defined the attributes and a list of attributes as new ORTE data types to make it easier for people to pass them around (since they are now fundamental to the system, and therefore we will be packing and unpacking them frequently). Thus, all the functions to manipulate attributes can be implemented and debugged in one place.
I used those capabilities in two places:
1. Added an attribute list to the rmgr.spawn interface.
2. Added an attribute list to the ras.allocate interface. At the moment, the only attribute I modified the various RAS components to recognize is the USE_PARENT_ALLOCATION one (as defined in rmgr_types.h).
So the RAS components now know how to reuse an allocation. I have debugged this under rsh, but it now needs to be tested on a wider set of platforms.
This commit was SVN r12138.
seed value have something set to true. Allow selection of the listen
type to thread if (and only if) the process is the HNP...
This commit was SVN r12105.
processes launched locally for the stdio file names. This was causing
the expected files to not exist and bproc_vexecmove_io to fail.
* Clean up a bunch of debugging output in the bproc pls
This commit was SVN r12102.
I have tested on rsh, slurm, bproc, and tm. Bproc continues to have a problem (will be asking for help there).
Gridengine compiles but I cannot test (believe it likely will run).
Poe and xgrid compile to the extent they can without the proper include files.
This commit was SVN r12059.
We still have an issue with the io forwarding going through the spawning process, but that will be dealt with at a future time.
This commit was SVN r11943.
It turns out that we were improperly allocating an array if -np was not passed. Also, we were not really using this array for anything. So this gets rid of the array and performs some minor cleanup.
This commit was SVN r11934.
The following Trac tickets were found above:
Ticket 452 --> https://svn.open-mpi.org/trac/ompi/ticket/452
* Error message in an NSError object is localizedDescription, not
localizedErrorReason. The latter is a decription of how the error
can occur, which is usually nothing in XGrid frameworks.
* Clean up silly error in finding the Kerberos Service Principal
when using Kerberos authenticaion
* Print useful error message when a connection unexpectedly closes,
as this is usually authentication related...
This commit was SVN r11923.
remove requirements on .la files on wrapper scripts
Ticket: #374
extend compilers to support 32 bit and 64 bit in one version of the wrapper
Submitted by: Dan Lacher
Reviewed by: Rolf Vandevaart
This commit was SVN r11908.
install-exec-hook is not only wrong, it can cause ordering issues such
as trying to put sym links to man pages in directories that do not yet
exist.
This commit was SVN r11893.
I have added a new MCA param (hey, you can't have too many!) called OMPI_MCA_orte_timing. If set to anything other than zero, the system will report out critical timing loops. At the moment, this includes three measurements:
1. Time spent going through the RDS->RAS->RMAPS, setting up triggers, etc. prior to calling the actual PLS launch function. This is reported out as time to setup job.
2. Time spent in MPI_Init from start of that function (well, right after opal_init) to the place where we send all of our info the registry. Reported out as time from start to exec_compound_cmd
3. Time actually spent executing the compound cmd. Reported out as time to exec_compound_cmd.
A few additional timing points will be added shortly.
These may eventually be removed or (better) setup with a conditional compile flag.
This commit was SVN r11892.
1. PLS finalize was not being called. Now ensure that happens during orte_finalize.
2. Errmgr proxies were sending their messages to the wrong tag - typical cut/paste error.
This commit was SVN r11891.
__DARWIN_ALIGN_POWER define from the last release of the OS X compiler
toolchain. The bug in net/if.h, however, is still there. So look
for the hints that we're on a 64 bit Apple PowerPC instead.
* If we don't find a buffer size that works by 10MB, we're never
going to. So add some code to limit the buffer size we'll try
so that we don't fall into an infinite loop
* Detect errors in opal_ifcount in the oob init code
Refs trac:420
This commit was SVN r11825.
The following Trac tickets were found above:
Ticket 420 --> https://svn.open-mpi.org/trac/ompi/ticket/420
on 64 bit platforms sizeof(size_t) != sizeof(orte_std_cntr_t), and we were incorrectly
assuming this when dealing with num procs. It worked on little endian platforms, but
not big endian. So change num_procs to type int, and cast where needed.
This commit was SVN r11796.
wider space than getpid()
* Include <time.h> to get time()'s prototype
* Fix typo that prevented using /dev/urandom on systems that had it
This commit was SVN r11780.
Fix for double mutex free that would cause an abort condition in the orted
whenever threads were enabled.
This commit was SVN r11759.
The following Trac tickets were found above:
Ticket 391 --> https://svn.open-mpi.org/trac/ompi/ticket/391
LoadLeveler only sets LOADL_PROCESSOR_LIST when there are 128 or less tasks allocated to a job. The POE RAS relied on this variable so I created a new RAS which uses the LoadLeveler API instead of relying on the environment variable. This still needs some testing, so for now we use the POE RAS whenever LOADL_PROCESSOR_LIST, otherwise we fall back on this component.
Unfortunately, this will require an autogen...
This commit was SVN r11732.
We were still waiting the entire duration of the timeout before we figured out that a connect() was successful. Re-introduce adding the peer_send_event so that we detect immediately when a connect() completes.
Also make sure to delete the timeout event in complete_connect().
Fixed a struct timeval initialization warning reported by Jeff.
Remove an erroneous opal_output().
This commit was SVN r11724.
The following SVN revision numbers were found above:
r11718 --> open-mpi/ompi@1b6231a9b5
Each 's' partition has its own TCP network. It's fine to use this network for jobs that fit inside the partition, but the TCP OOB errors when trying to connect across two partitions, because there are two disjoint networks. Each node also has another TCP network connecting ALL nodes together.
So the solution is to actually try all the available TCP interfaces on a node, instead of erroring when the first one fails.
Also, the default TCP connect() timeout is way too long (5 minutes) - use our own timeout mechanism, with the timeout value expressed as an MCA parameter.
This commit was SVN r11718.
Add --enable-orterun-prefix-by-default (and a synonym:
--enable-mpirun-prefix-by-default) to make orterun always behave as if
"--prefix $prefix" was given on the command line (where $prefix is the
value given to the --prefix option to configure). This prevents many
rsh/ssh users from needing to modify their shell startup files to set
the LD_LIBRARY_PATH for Open MPI (they will still need to set PATH or
otherwise find the OMPI executables to mpicc/mpirun/etc. their MPI
applications).
Also added --noprefix option to orterun to disable this behavior.
Finally, note that even if --enable-orterun-prefix-by-default is
specified, if the user specifies --prefix or /path/to/mpirun, these
options will override the default value of the prefix ($prefix).
This commit was SVN r11669.
The following Trac tickets were found above:
Ticket 377 --> https://svn.open-mpi.org/trac/ompi/ticket/377
Allow the POE RAS to be compled for linux as well as AIX.
The POE RAS is really a Loadleveler RAS, and IU now has
a cluster that uses Loadleveler in a Linux environment (BigRed).
This seems to be the only thing we need to do so far to run
Open MPI on BigRed. Yay :)
This commit was SVN r11600.
set to 1 or 0 instead of the user defined number or default (128).
This caused the PLS to deadlock when using '--debug-daemons' with
more than 2 processes. :(
svn blame says that it was broken in r11347
It is *not* a problem on v1.1 or v1.2 branches.
Bug spotted by Tim Mattox and myself.
This commit was SVN r11575.
The following SVN revision numbers were found above:
r11347 --> open-mpi/ompi@f52c10d18e
- everything statically built (dynamically opened).
- OPAL, ORTE and OMPI static libraries and all the components
as dynamic files(DLL).
- everything as dynamic files (DLL).
This commit was SVN r11461.
create a process component which use CreateProcess to spawn the child.
Special care should be taken in order to correctly redirect the stdin,
stdout and stderr of the child process.
This commit was SVN r11405.
- Remove extra NULL argument from rsh module.
This commit was SVN r11377.
The following SVN revision numbers were found above:
r11347 --> open-mpi/ompi@f52c10d18e
- use the OPAL functions for PATH and environment variables
- make all headers C++ friendly
- no unamed structures
- no implicit cast.
Plus a full implementation for the orte_wait functions.
This commit was SVN r11347.
different macros, one for each project. Therefore, now we have OPAL_DECLSPEC,
ORTE_DECLSPEC and OMPI_DECLSPEC. Please use them based on the sub-project.
This commit was SVN r11270.
Other changes:
1. Remove the old xcpu components as they are not functional.
2. Fix a "bug" in orterun whereby we called dump_aborted_procs even when we normally terminated. There is still some kind of bug in this procedure, however, as we appear to be calling the orterun job_state_callback function every time a process terminates (instead of only once when they have all terminated). I'll continue digging into that one.
This will require an autogen/configure, I'm afraid.
This commit was SVN r11228.
Clean up the remainder of the size_t references in the runtime itself. Convert to orte_std_cntr_t wherever it makes sense (only avoid those places where the actual memory size is referenced).
Remove the obsolete oob barrier function (we actually obsoleted it a long time ago - just never bothered to clean it up).
I have done my best to go through all the components and catch everything, even if I couldn't test compile them since I wasn't on that type of system. Still, I cannot guarantee that problems won't show up when you test this on specific systems. Usually, these will just show as "warning: comparison between signed and unsigned" notes which are easily fixed (just change a size_t to orte_std_cntr_t).
In some places, people didn't use size_t, but instead used some other variant (e.g., I found several places with uint32_t). I tried to catch all of them, but...
Once we get all the instances caught and fixed, this should once and for all resolve many of the heterogeneity problems.
This commit was SVN r11204.
Note that some compile warnings are generated here because of the direct inclusion of an orte include file in the program. Not entirely sure why that is happening (it is relatively new phenomenon), but it doesn't cause any problems in terms of operation.
This commit was SVN r11175.
Fixed a few very minor compiler complaints in the pls_gridengine_module.c file. ISO C is less forgiving about where variables get declared.
This commit was SVN r11156.
- indent / whitespace cleanup
- don't set --daemon-debug when pls debug is given, as it seems to make
the daemons abort.
This commit was SVN r11113.
The following SVN revision numbers were found above:
r11109 --> open-mpi/ompi@da7df6d257
1. Introduces a flag for the type of buffer that now allows a user to either have a fully described or a completely non-described buffer. In the latter case, no data type descriptions are included in the buffer. This obviously limits what we can do for debugging purposes, but the intent here was to provide an optimized communications capability for those wanting it.
Note that individual buffers can be designated for either type using the orte_dss.set_buffer_type command. In other words, the buffer type can be set dynamically - it isn't a configuration setting at all. The type will default to fully described. A buffer MUST be empty to set its type - this is checked by the set_buffer_type command, and you will receive an error if you violate that rule.
IMPORTANT NOTE: ORTE 1.x actually will NOT work with non-described buffers. This capability should therefore NOT be used until we tell you it is okay. For now, it is here simply so we can begin bringing over parts of ORTE 2.0. The problem is that ORTE 1.x depends upon the transmission of non-hard-cast data types such as size_t. These "soft" types currently utilize a "peek" function to see their actual type in the buffer - obviously, without description, the system has no idea how to unpack these "soft" types. We will deal with this later - for now, please don't use the non-described buffer option.
2. Introduces the orte_std_cntr_t type. This will become the replacement for the size_t's used throughout ORTE 1.x. At the moment, it is actually typedef'd to size_t for backward compatibility.
3. Introduces the orte_dss.arith API that supports arbitrary arithmetic functions on numeric data types. Calling the function with any other data type will generate an error.
This commit was SVN r11075.
correctly with MPI_Comm_spawn.
The problem wiht MPI_Comm_spawn was that the 'parent' process was
rmgr.create'ing and then rmgr.launch'ing the children via the rmgr proxy
component. The HNP saw these commands and processed them normally, but
since we never went through the HNP's rmgr (urm component) spawn()
logic the triggers and key/value pairs were never created. So the
children were launched correctly, but since the HNP did not
have any triggers setup, never triggered the xcast for the
children to finish orte_init().
This fix puts the trigger and key/value pair initialization in
rmgr_urm_spawn() for the 'mpirun a.out' case, *and* in the
rmgr_base_unpack routine that deals with the creation of the
job for the child as requested by the proxy component. This
will allow the triggers to be registered for the proxy's request
which only happens during MPI_Comm_spawn*
Small change for a lot of debugging. Notice that his reverts r11037
to its previous version, and adds a newline to handle the spawn
cases.
This commit was SVN r11046.
The following SVN revision numbers were found above:
r11037 --> open-mpi/ompi@5813fb7d2a
By reverting this file (changeset from commit r10708) to its previous
version fixes the problem.
This should be moved to the v1.1 branch where it is also broken.
This commit was SVN r11037.
The following SVN revision numbers were found above:
r10708 --> open-mpi/ompi@febc143d8c
r10841, so revert it (and it's fixes) out. Will bring back once cleaned up from
the code used in the tbird experiment
This commit was SVN r10991.
The following SVN revision numbers were found above:
r10841 --> open-mpi/ompi@dfa1221c3b
Added another system-level test function for ORTE that just spins until terminated by a ctrl-c signal.
Modified orterun - added a couple of newlines to the output when abnormally terminating so the prompt always is on a new line.
This commit was SVN r10866.
handler before the write() and de-register it afterwards. Determine
if the write() succeeded or failed by the return of write().
This commit was SVN r10858.
than $(LN_S). This causes problems with with Windows and probably
elsewhere (re: #200). So use a slightly different trick to get the
right header selected for the MEMCPY and TIMER components.
* Using the same trick used to solve the AC_CONFIG_LINKS problem,
stop using a separate header file for direct calling in the
PML and MTL. This lets me remove some icky code in ompi_mca.m4
that was more fragile than I really liked.
This commit was SVN r10841.
keep the resulting tm_event_t that is generated because the back-end
TM library actually caches a bunch of stuff on it for internal
processing, and doesn't let go of it until tm_poll().
tm_event_t's are similar to (but slightly different than)
MPI_Requests: you can't do a million MPI_Isend()'s on a single
MPI_Request -- a) you need an array of MPI_Request's to fill and b)
you need to keep them around until all the requests have completed.
This commit was SVN r10820.
Jeff: this needs to be back-patched to our supported prior releases. I'll try to verify how far back we need to go - my initial guess is probably all of them
This commit was SVN r10801.
- change -no_oversubscribe to -nooversubscribe (to be similar to
-nolocal)
- Added text to orterun.1 describing slots and -nooversubscribe
Still need to add text about "mpirun a.out" functionality, and RHC
wants to make some minor edits, so committing for synchronization.
This commit was SVN r10800.
Since Jeff and I are going to a branch for T-bird, we have restored the trunk to its prior state to avoid any possibility of disturbing it.
This commit was SVN r10774.
Please report any abnormal behavior during launch, though, as we would like to understand what (if any) impact is seen. I couldn't see any on small jobs (the modulo functions render this number down pretty low).
This commit was SVN r10763.
- orte-clean.c : check to see if the base session directory is empty
and delete it if it is.
- orte_universe_exists.c : Fix a down stread problem resulting from
George's r10718 commit. Don't use the 'fulldirpath' since
that is no longer guarenteed to be the absolute path
to the session directory. Construct this value outside of that
function from the prefix and frontend vars.
This commit was SVN r10741.
The following SVN revision numbers were found above:
r10718 --> open-mpi/ompi@47eef2e002
so that it does not return an error when no universe is passed to it.
Also put back in the 'Slots In Use' column as it is now working properly
per Ralphs recent ras commits. Still not sure what 'Slots Alloc' is meant
to represent, so left that as #if 0'd out for the moment.
This commit was SVN r10739.
The following SVN revision numbers were found above:
r10718 --> open-mpi/ompi@47eef2e002
Update the help text to report errors when not following that rule.
Also updated the RMAPS help text to reflect the reorganization of some of the round-robin code into the base.
The new functionality has been tested under Mac OS-X and on Odin using an MPI program. Both byslot and bynode mapping have been checked and verified. Operational support for other systems needs to be verified - I respectfully request people's help in doing so.
This commit was SVN r10708.
1. Modifies the RAS framework so it correctly stores and retrieves the actual slots in use, not just those that were allocated. Although the RAS node structure had storage for the number of slots in use, it turned out that the base function for storing and retrieving that information ignored what was in the field and simply set it equal to the number of slots allocated. This has now been fixed.
2. Modified the RMAPS framework so it updates the registry with the actual number of slots used by the mapping. Note that daemons are still NOT counted in this process as daemons are NOT mapped at this time. This will be fixed in 2.0, but will not be addressed in 1.x.
3. Added a new MCA parameter "rmaps_base_no_oversubscribe" that tells the system not to oversubscribe nodes even if the underlying environment permits it. The default is to oversubscribe if needed and the underlying environment permits it. I'm sure someone may argue "why would a user do that?", but it turns out that (looking ahead to dynamic resource reservations) sometimes users won't know how many nodes or slots they've been given in advance - this just allows them to say "hey, I'd rather not run if I didn't get enough".
4. Reorganizes the RMAPS framework to more easily support multiple components. A lot of the logic in the round_robin mapper was very valuable to any component - this has been moved to the base so others can take advantage of it.
5. Added a new test program "hello_nodename" - just does "hello_world" but also prints out the name of the node it is on.
6. Made the orte_ras_node_t object a full ORTE data type so it can more easily be copied, packed, etc. This proved helpful for the RMAPS code reorganization and might be of use elsewhere too.
This commit was SVN r10697.
using a pty for everything, which drops all buffered data on the floor when
close() is called on the daemon side, meaning EOF has some issues. Instead,
do the same thing we do for other starters that use the fork() pls -- use
a pipe/fifo for stdin and stderr and a pty for stdout. This is good enough
for what we need and avoids most of the issues with ptys.
This commit was SVN r10692.
Basically, the problem was that the allocator was grabbing everything on the cluster for which the user had access privilege. Thus, if a user had two sessions operable, each with its own allocation, mpirun in each session would grab both sets of nodes and use them. Not very polite.
This commit was SVN r10683.
* num_children should really be an int instead of size_t
since 'size_t' is not signed and num_children can (in rare cases)
drop below 0, and don't want it to roll around to MAX_INT or some
such.
* I figured out that this problem only happened to me because I use
the pls_fork_reap_timeout MCA parameter and thus the only time that
the code in pls_fork_module.c to waitpid is executed is if this is
not set to 0 (I had it set to 1 to give my procs time to exit). I
adjusted the loop from while{...} to do{...}while; so that it is
executed at least once for consistency.
* de-register the SIGCHILD callback for the pid before we attempt
to kill it, so that we don't leave the door open for both the
waitpids (the one in the callback, and the one in this function)
to race to see who can wait on the child.
* Move the 'thread release' to outside the for loop for a bit of an
optimization, and always set the value to 0 since we want to
finish after this function.
* Added a help message for the case when we can't send a kill()
signal to the process. Should never happen, but all is possible
in the wild wild west of HPC.
This commit was SVN r10666.
When we force an application to terminate (via CTRL-C to mpirun)
we send an out-of-band message to the orted to reap its children.
the fork PLS was doing an internal waitpid but never releasing or
updating the information and signaling the condition variable. So
the fork PLS callback for SIGCHLD registered with the event library
and this waitpid are in a bit of a race to 'waitpid' for the children.
Since the PLS callback was the only one that handled the signal properly
when it 'won' then things were great -- as in the normal termination case.
But when it 'lost' -- as in the abnormal termination case -- the orted
never received the proper signal that its children had gone away.
We want to preserve the internal fork PLS callback since it allows
for a timeout while waiting for the child, which the event library
won't do.
This allows both to exist, and behave properly.
This was introduced in r9068.
The ticket is still open since the orted's hang in other situations
still. This is a fix for one of the causes.
This commit was SVN r10662.
The following SVN revision numbers were found above:
r9068 --> open-mpi/ompi@c2c2daa966
/tmp/tm-merge). Validated by RHC. Summary:
- Add --nolocal (and -nolocal) options to orterun
- Make some scalability improvements to the tm pls
This commit was SVN r10651.
with an error status (< 0) then the req buffer is NULL. Put checks around the
OBJ_RELEASE(req) calls so that we don't try to release NULL :/
This commit was SVN r10641.
After seeing the uglyness that is removing directories in the
codebase I decided to push down this to the OPAL by extending the
opal/os_create_dirpath.(c|h) to contain some more functionality.
In this process I renamed 'os_create_dirpath' to 'os_dirpath' since it
is a bit more general now.
Added a few functions to:
- check if an directory is empty
- check to see if the access permissions are set correctly
- destroy the directory at the end of the dirpath
- By using a caller callback function (a la Perl, I believe)
for every file, the caller can have fine grained control over
whether a specific file is deleted or not.
This simplifies things a bit for orte_session_dir_(finalize|cleanup)
as it should no longer contain any of this functionality, but uses
these functions to do the work.
From the external perspective nothing has changed, from the
developer point of view we have some cleaner, more generic code.
This commit was SVN r10640.
Since we don't properly handle connecting/disconecting from multiple
universes, only connect to the first one (or the user specified one).
This is a bug that needs to be fixed, but involves some deep magic in
ORTE.
Print the node segment upon request (-n option).
{{{
Node Name | Arch | Cell ID | State | Slots | Slots Max |
-----------------------------------------------------------
odin001 | | 0 | Unknown | 2 | 4 |
odin002 | | 0 | Unknown | 2 | 5 |
odin003 | | 0 | Unknown | 2 | 6 |
odin004 | | 0 | Unknown | 2 | 7 |
}}}
Since node_slots_alloc and node_slots_inuse are not properly updated
in the GPR don't print those values.
This commit was SVN r10633.
This moves the logic to create the symbolic links for:
- mpirun
- mpiexec
- ompi-ps
- ompi-clean
and their respective man pages to the ompi level from
the orte layer.
This is a bit pedantic, but orte shouldn't be doing the
work of ompi since that is a bit of an abstraction break.
Note: need to autogen.sh to get this. Sorry :(
This commit was SVN r10602.
per a request.
Currently it is not working well. That will soon change
as it just needs a bit of attention and testing to
make it lots-mo-betta.
This commit was SVN r10556.
per a request for its functionality into the main trunk.
This command provides basic information about a running job. It
needs a bit of attention, but works fine in its current iteration.
Please play with it, and lets try to work out all the left over bugs.
Pending action for this tool:
It has been requested that the tool be changed slightly to allow
it to be called via a function call from internal libraries
(e.g. orteconsole).
This commit was SVN r10554.
from the tmp/jjhursey-ft-cr branch.
In this commit we change the way universe names are created.
Before we by default first created "default-universe" then
if there was a conflict we created "default-universe-PID"
where PID is the PID of the HNP.
Now we create "default-universe-PID" all the time (when
a default universe name is used). This makes it much
easier when trying to find a HNP from an outside app
(e.g. orte-ps, orteconsole, ...)
This also adds a "search" function to find all of the
universes on the machine. This is useful in many contexts
when trying to find a persistent daemon or when trying to
connect to a HNP.
This commit also makes orte_universe_t an opal_object_t,
which is something that needed to happen, and only effected
the SDS in one of it's base functions.
I was asked to bring this over to aid in fixing orteconsole
and orteprobe. Due to the change of orte_universe_t to
an object orteprobe may need to be updated to reflect this
change. Since orteprobe needs to be looked at anyway I'll
leave this to Ralph to take care of.
*Note*:
These changes do not depend upon any of the FT work (but
the FT work does depend upon them). These were brought over
to help in fixing some of the ORTE tool set that require
the functionality layed out in this patch.
Testing:
Ran the 'ibm' tests before and after this change, and all was
as well as before the change. If anyone notices additional
irregularities in the system let me know. But none are expected.
This commit was SVN r10550.
SIGUSR2. This can be extended later if needed to include other
signals we should forward to the user processes (TSTP and CONT,
perhaps?)
* Since the signal handlers don't actually run in signal context, we
can use malloc/fprintf/etc. So clean up some of the signal handler
code so that we don't keep message buffers around for the life of
the process
This commit was SVN r10496.
This commit will apply cleanly to the v1.1 branch, and should
be moved over once I get someone to verify it.
The problem is outlined in the bug. The fix was to move the
setting of the app context index (idx) before we put it in the
GPR so that it is propogated to the gpr.
The reason this hasn't bitten us before is because we init
app->idx to 0, which is true most of the time. Except that is
when MPI_Comm_spawn_multiple in which we put in more than
one app context, thus care about correct indexing.
This was causing down the line memory corruption by overrunning
the mapping array. This commit also puts in a check to make
sure that we error out if we ever try to do that again.
This commit was SVN r10380.
mpirun/orterun now has an option to print the version number. If -V/--version
is given, it will print the version number. If it's the only option, we
exit cleanly. Otherwise, we continue on as if --version wasn't given
(except we've printed the version number).
--This line, and th se below, will be ignored--
M orte/tools/orterun/orterun.c
M orte/tools/orterun/help-orterun.txt
This commit was SVN r10276.
1. Changed the RMGR and PLS APIs to add "signal_job" and "signal_proc" entry points. Only the "signal_job" entries are implemented - none of the components have implementations for "signal_proc" at this time. Thus, you can signal all of the procs in a job, but cannot currently signal only one specific proc.
2. Implemented those new API functions in all components except xgrid (Brian will do so very soon). Only the rsh/ssh and fork modules have been tested, however, and only under OS-X.
3. Added signal traps and callback functions for SIGUSR1/2 to orterun/mpirun that catch those signals and call the appropriate commands to propagate them out to all processes in the job.
4. Added a new test directory under the orte branch to (eventually) hold unit and system level tests for just the run-time. Since our test branch of the repository is under restricted access, people working on the RTE were continually developing their own system-level tests - thus making it hard to help diagnose problems. I have moved the more commonly-used functions here, and added one specifically for testing the SIGUSR1/2 functionality.
I will be contacting people directly to seek help with testing the changes on more environments. Other than compile issues, you should see absolutely no change in behavior on any of your systems - this additional functionality is transparent to anyone who does not issue a SIGUSR1/2 to mpirun.
Ralph
This commit was SVN r10258.
of $libdir and $bindir (i.e., was correctly doing local launches, but
was still using $prefix/lib and $prefix/bin for remote launches).
[Re-]Fixes OFED bug 59.
This commit was SVN r10207.
The following SVN revision numbers were found above:
r9930 --> open-mpi/ompi@1d6902296c
We were stuck in an infinite loop inside the rmaps round_robin
component when the user specified a host, then over subscribed it.
Instead of retuning an error, we looped forever.
For example:
$ cat hostfile
A slots=2 max-slots=2
B slots=2 max-slots=2
$ mpirun -np 3 --hostfile hostfile --host B
<hang>
The loop would not terminate because both host A and B are in the
'nodes' structure as they are both allocated to the job. However,
after allocating 2 slots to host B, we remove it from the node list
leaving us with a 'nodes' structure with just A in it. Since we can't
use host A, we keep looping here until we find a node that we can use.
This patch checks to make sure that if we get into this situation where
rmaps is looping over the list a second time without finding a node
during the first pass then we know that there are no nodes left to
use, so we have a resource allocation error, and should return to the user.
This patch should be moved to all of the release branches
This commit was SVN r10131.
pipeline. See lengthy comment in iof_base_endpoint.c for the details, but
the short version is that we shouldn't set O_NONBLOCK on standard I/O
file descriptors, so we no longer do.
Closes ticket:9
This commit was SVN r9966.
option as discussed on the devel-core mailing list. The Big
Difference is that instead of hard-coding the strings "/lib" and
"/bin" in to append to the prefix, we append the basename of the local
libdir and bindir. Hence, if your libdir is $prefix/lib64, we'll
append /lib64 to construct the remote node's LD_LIBRARY_PATH (etc.).
Also appended the orterun.1 man page to include a description of
--prefix, how it is constructed, what it handles / what it does not,
etc.
This commit was SVN r9930.
exit out, rather than trying to have the pls exit. Since singletons
weren't started with a pls, there's no way the pls is going to be
able to kill the process. So just exit and save the error message.
This commit was SVN r9859.
in San Jose. Allow the configure option --disable-binaries to build OMPI,
but not build or install the support binaries (so basically, just build
the libraries).
This commit was SVN r9777.
as the smaller machine's SIZE_MAX won't be SIZE_MAX on the bigger machine, which
can lead to failures along the way -- in this case, with GPR triggers being
improperly fired.
This commit was SVN r9776.
is interpreted as a shutdown of the io channel on the next iteration.
Definitively not the good approach. The correct condition is
bigger than 0.
This commit was SVN r9770.
copy of the receive buffer based on the iovec struct that may have been updated
during partial reads to reflect the current offset. Need to make the copy using
the base address of the buffer.
Thanks to Sven Stork for finding this.
This should be backported to 1.0.X and 1.1.X branches.
This commit was SVN r9749.
automagically bring in the libraries through the top-level library (so
liborte automatically brings in libopal, etc.). Otherwise, we get some
warnings on Solaris
This should go to the v1.1 branch
This commit was SVN r9666.
- The constant 1 is a signed int by default. Explicitly say that
it is an unsigned value so we can't overflow
- Fix unreachable statement warnings in dss_arith by breaking out
of switch statements instead of returning - this should have
no impact on performance, since it's a non-conditional jump
- A couple of the GPR files had carriage returns and were in
DOS mode - put them in unix mode...
These should all probably go to the v1.1 branch...
This commit was SVN r9664.
Copy the Doxyfile to orte so people can generate just that documentation. Adjust the properties on that directory so it ignores the resulting doxygen output tree.
This should go over to the release branch(es)
This commit was SVN r9625.
