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Граф коммитов

3073 Коммитов

Автор SHA1 Сообщение Дата
Nathan Hjelm
c65f026fee btl/vader: fix typo in xpmem setup 2015-01-08 12:52:38 -07:00
Nathan Hjelm
9f6faadd91 opal_fifo: add missing memory barrier in pop
Thanks to Adrian Reber for reporting this.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-01-08 09:14:56 -07:00
Gilles Gouaillardet
4c29d8e247 btl/openib: silence warning (unused code) 2015-01-08 17:18:07 +09:00
Gilles Gouaillardet
8ab605d9c5 btl/tcp: fix overflow in mca_btl_tcp_endpoint_dump() 2015-01-08 15:40:16 +09:00
Nathan Hjelm
7d206ae769 btl/ugni: fix a couple of bugs
Two fixes:

 - Do not try to return a mailbox to the free list if one wasn't
   allocated.

 - Do not try to tear down IRQ CQs if they were not created.
2015-01-07 13:48:17 -07:00
Dave Goodell
49069bc661 usnic: fix fi_av_insert (ARP resolution) bugs
We had several problems in the old code:

1. We were specifying an arbitrary timeout (100 ms) and then abandoning
   all remaining pending AV insert operations.  We would then free the
   endpoint buffer that we gave to fi_av_insert(), usually causing
   libfabric's progress thread to write to a freed buffer.

2. We were claiming in a show_help message that the timeout was
   controllable via an MCA parameter.  This commit removes that
   parameter, since there's no good method for us to specify a timeout
   like this to libfabric right now.

3. We also weren't waiting for the correct number of fi_av_insert()
   operations to complete.  We were waiting for nprocs, which is
   accidentally fine for 2 procs on separate hosts, but not for most
   other proc counts.

Reviewed-by: Jeff Squyres <jsquyres@cisco.com>
2015-01-07 08:25:17 -08:00
Gilles Gouaillardet
06e071454e btl/openib: cleanup duplicate code 2015-01-07 14:07:30 +09:00
Gilles Gouaillardet
135ecce0eb btl/openib: rename OPAL_HAVE_XRCD macro into OPAL_HAVE_CONNECTX_XRC_DOMAINS 2015-01-07 13:27:25 +09:00
George Bosilca
bf62bed65f Typo in the poll/epoll ops declaration. 2015-01-06 21:21:25 -05:00
Ralph Castain
a7c5ff2ace Update to libevent 2.0.22-stable 2015-01-06 16:37:25 -08:00
Nathan Hjelm
6733d89cf9 btl/vader: fix return code check when opening ptrace_scope file 2015-01-06 15:17:56 -07:00
Nathan Hjelm
cde79bfa60 btl/openib: misc cleanup (tabs, etc) and put credit code into a common place (was duplicated in the send and sendi paths) 2015-01-06 11:39:23 -07:00
Nathan Hjelm
9bae131589 btl/openib: fix message coalescing
There was a bug in the openib btl handling this valid sequence of
calls:

desc = btl_alloc ();
btl_free (desc);

When triggered the bug would cause either fragment loss or undefined
behavior (SEGV, etc). The problem occured because btl_alloc contained
the logic to modify the pending fragment (length, etc) and these
changes were not corrected if the fragment was freed instead of sent.

To fix this issue I 1) moved some of the coalescing logic to the
btl_send function, and 2) retry the coalesced fragment on btl_free
if it was never sent. This appears to completely address the issue.
2015-01-06 11:39:16 -07:00
Nathan Hjelm
9aaac11648 btl/openib: fix recieve queue source detection 2015-01-06 11:39:11 -07:00
Howard Pritchard
7df648f1cf btl/openib: fix problems from commit b3617e73
For systems with OFED's lacking XRC support, commit b3617e73
broke the build of the openib btl.  This commit addresses
the issues introduced by this commit.
2015-01-06 11:31:12 -07:00
Ralph Castain
4c38c31ccf Actually copy buffer contents when dss.copy of a buffer is requested 2015-01-06 09:09:06 -08:00
Gilles Gouaillardet
b3617e736e btl/openib: add XRC support with OFED 3.12+
based on an original patch contributed by Bull.
2015-01-06 15:30:52 +09:00
Howard Pritchard
c857cc926c Merge pull request #327 from hppritcha/topic/async_progress
Topic/async progress
2015-01-05 16:20:44 -07:00
Dave Goodell
8afd8487f8 opal_stdint.h: fix "#pragma GCC" warnings
This was more complicated than I would like, but it's just an
unfortunate GCC/clang difference.  I don't have access to all the C
compilers out there, so this may still have problems with other
compilers that implement some form of `#pragma GCC diagnostic` support
but don't actually behave the same as some versions of GCC.

fixes #323
2015-01-05 14:44:46 -08:00
Gilles Gouaillardet
9e9261e90a pmix: correctly set locality flags in proc_flags
do not use opal_process_info.cpuset which is not
set at that time.
2014-12-26 15:37:08 +09:00
Howard Pritchard
0a6f841d5f xpmem/config: simple xpmem search on Cray's
Use the pkg-config related m4 functions to find out where
Cray's xpmem.h and libxpmem are located on a system.

With this commit, there is no longer any need to have to
explicitly indicate an xpmem install location on the configure
line, at least for Cray systems running CLE 4.X and 5.X.
2014-12-24 14:40:06 -07:00
Howard Pritchard
065c756860 btl/ugni: improve error handling
Improve error handling when pthread functions return errors.
Remove stale debug code.
2014-12-24 11:50:24 -07:00
Howard Pritchard
f8e354ce00 btl/ugni: add a request_progress_thread mca param
Replace temporary environment variables with a MCA
parameter for the ugni btl.  A user wishing to
use the ugni btl async. progress thread needs to
set the request_progress_thread param to true.
For example, using env. variable format:

export OMPI_MCA_btl_ugni_request_progress_thread=1
2014-12-24 11:50:24 -07:00
Howard Pritchard
8b250cc15b btl/ugni: more debug cleanup 2014-12-24 11:50:24 -07:00
Howard Pritchard
f0c519517b btl/ugni: switch to using opal_progress
Switch to invoking opal_progress from the async progress
thread, rather than calling ugni btl specific progress.
2014-12-24 11:50:24 -07:00
Howard Pritchard
47747c1b27 btl/ugni: remove some debug output 2014-12-24 11:50:24 -07:00
Howard Pritchard
2d14c2a204 btl/ugni: switch to using tx cq irqs for rdma
Verified via testing with unit tests, etc. that
in fact BTE TX descriptors using CQs configured to
generate IRQs were in fact working correctly on Cray XC.  Disable
send message back to self and just use IRQs generated
by completion of TX descriptors posted to BTE.
2014-12-24 11:50:24 -07:00
Howard Pritchard
acd07d98da btl/ugni: turn off chatty debug in irq cq setup 2014-12-24 11:50:24 -07:00
Howard Pritchard
0dec2f4af7 btl/ugni: mark btl frags for irqs as btl owned
Make sure frags allocated to generate irqs to wake
the progress thread, etc. set the MCA_BTL_DES_FLAGS_BTL_OWNERSHIP
flag.
2014-12-24 11:50:23 -07:00
Howard Pritchard
d188f0bc6f btl/ugni: honor enable_mpi_threads
Honor enable_mpi_threads setting to enable the ugni btl
async progress thread.  If the app doesn't request thread-multiple
the thread will not be created.
2014-12-24 11:50:23 -07:00
Howard Pritchard
43cdcb745f btl/ugni: add missing mutex lock 2014-12-24 11:50:23 -07:00
Howard Pritchard
83bcbd1cf9 btl/ugni: compilation fixes
Fix compilation problems in ugni btl associated with
async progress additions.
2014-12-24 11:50:23 -07:00
Howard Pritchard
13ab8a9e5a btl/ugni: use MCA_BTL_DES_FLAGS_SIGNAL
Use MCA_BTL_DES_FLAGS_SIGNAL frag flag to indicate
whether or not an interrupt needs to be delivered
along with a control message going through smsg.
2014-12-24 11:50:23 -07:00
Howard Pritchard
3fc7b389ff initial async progress changes for gni 2014-12-24 11:50:23 -07:00
Devendar Bureddy
ccafc62c07 OMPI: btl openib: fix max registarable memory caluclation
- by default allow to register maximum possible (i.e 2 * total_memory)
      memory. This beheviour can be turned off using mca parameter
      "btl_openib_allow_max_memory_registration"

    - In fallback case, use device specific parameters to calulate
      memory limit.
2014-12-23 23:35:54 +02:00
Howard Pritchard
ffbf9738a3 btl/vader: disable SGI UV xpmem for now
This commit allows master to build again on SGI UV systems.

Fixes #322
2014-12-23 12:04:25 -07:00
Gilles Gouaillardet
f6da257477 configury: test external hwloc version is 1.8 or greater
hwloc_topology_dup is only available from hwloc 1.8
2014-12-22 13:42:38 +09:00
Jeff Squyres
40dd4c5b76 configury: manually remove some stamp-h? files
Due to what might be a bug in Automake, we need to remove stamp-h?
files manually.  See
http://debbugs.gnu.org/cgi/bugreport.cgi?bug=19418.
2014-12-20 08:32:57 -08:00
Jeff Squyres
d5b3e5802e libfabric configury: add more tests
Properly test for some dependent libraries; don't just assume
elsewhere in Open MPI's configury will find those libraries.  Also
consolidate some CPPFLAGS and clarify some comments.
2014-12-20 08:32:47 -08:00
Jeff Squyres
012e008649 libfabric configury: make AC_CONFIG_FILES be unconditional
Also add the generated config.h file to .gitignore.
2014-12-20 08:32:47 -08:00
Jeff Squyres
45ef0352d7 libfabric: do a proper check for intrinsic atomics 2014-12-20 08:32:46 -08:00
Jeff Squyres
ff1364cbe4 Revert "libfabric: add missing header file"
That wasn't a missing header file; in fact, it should have been
.gitignored!

This reverts commit 35bf5fc60c.
2014-12-19 17:39:30 -08:00
Jeff Squyres
35bf5fc60c libfabric: add missing header file 2014-12-19 17:33:11 -08:00
Jeff Squyres
e0f660cb9e libfabric: fix clang compile error in usnic provider
From ofiwg/libfabric@0078c93ae4
2014-12-19 15:45:16 -08:00
Jeff Squyres
75797c4f30 libfabric: update embedded libfabric configury
To support the newly-copied libfabric downloaded from github
ofiwg/libfabric@8da3957de3.
2014-12-19 14:45:30 -08:00
Jeff Squyres
e2362988a9 libfabric: update to ofiwg/libfabric@8da3957de3
Pull down a new embedded copy of libfabric from
https://github.com/ofiwg/libfabric.
2014-12-19 14:45:21 -08:00
Howard Pritchard
91b0d03bf2 pmix/cray: remove dead code 2014-12-19 13:08:23 -08:00
Ralph Castain
123fdd603f If we are using hwthread cpus, then default to binding there, letting the user override to whatever they want 2014-12-19 08:04:28 -08:00
Rolf vandeVaart
26482db736 Bump up max send size. Gives much better performance for GPU transfers while only decreasing host transfers by a small amount. 2014-12-18 13:22:58 -08:00
Jeff Squyres
de31b08a24 Merge pull request #319 from miked-mellanox/topic/opal_path_nfs_autofs
skip check for autofs if fstype is autofs jenkins: check
2014-12-18 15:47:16 -05:00
Mike Dubman
da5b8c6879 OPAL: skip comparison when when fs=autofs in mtab, because we are looking for reals fs type 2014-12-18 21:42:25 +02:00
Jeff Squyres
c621d1e622 libfabric: don't LIBADD the common library in the static case
Adding the libfabric common library in the --disable-dlopen case will
result in duplicate symbols.
2014-12-18 11:04:08 -08:00
Jeff Squyres
140bb3d421 hwloc configure: fix typo -- add missing $
Arrgh!  Missed a "$" in the last commit, making the test always
false.
2014-12-18 10:25:43 -08:00
Jeff Squyres
be6d46490f hwloc: only add CPPFLAGS if hwloc is actually being built
As pointed out by @ggouaillardet, we were adding some unnecessary -I
flags to CPPFLAFGS when --without-hwloc was being used.  This commit
slightly updates the hwloc191 component configury to only add such
things when the component is, in fact, going to be
compiled/installed.
2014-12-18 08:56:49 -08:00
Jeff Squyres
c205c70f39 usnic libfabric: remove useless "config.h" includes
This change was also committed upstream in libfabric.
2014-12-18 08:47:59 -08:00
Jeff Squyres
269d7f9713 openib: don't use opal_using_threads() in component_init
Use the flag that was passed in, instead.
2014-12-17 15:08:43 -08:00
Jeff Squyres
c1b43b6753 libfabric: the LIBADD should be unconditional
The LIBADD for the common libfabric library does not belong down in
the providers; it needs to be set when the libfabric core itself
decides to build.
2014-12-17 14:02:08 -08:00
Jeff Squyres
f1a5d3a90d configury: propagate a libtool shared lib version for libfabric 2014-12-17 13:36:01 -08:00
Jeff Squyres
d6f059f538 configury: add some descriptive output messages in configure
Ensure that the ofi MTL and the usnic BTL have good descriptive output
messages in configure.
2014-12-17 13:36:01 -08:00
Jeff Squyres
6edc19d78d libfabric: ensure that shell variables are initialized
Ensure that the <provider>_happy shell variables are initialized to
0.  Without this, the --without-libfabric case would leave them
initialized, resulting in "test: -eq operator expecting a value" kinds
of errors.
2014-12-17 13:36:01 -08:00
Rolf vandeVaart
f55de452ab Change the way we register the sm memory pool with CUDA. Rather than just registering local free lists, register the entire pool as the local process does not know which memory the remote processes are using for free lists. Fixes performance problem we were seeing with copying out of memory (since host piece was not pinned). 2014-12-17 14:21:34 -05:00
George Bosilca
830df07202 Fix the indentation. 2014-12-16 16:07:42 -05:00
George Bosilca
146ab96e29 These variables are now unnecessary. 2014-12-16 16:05:00 -05:00
Aurélien Bouteiller
ee3b090316 The fallback case when yama is not installed was not correct in CMA vader 2014-12-16 14:39:14 -05:00
Aurélien Bouteiller
0bf860ef02 indentation 2014-12-16 14:22:26 -05:00
Jeff Squyres
95da4a5a0e usnic: no longer use opal_using_threads()
Instead, use the flag that is passed in.
2014-12-16 08:49:01 -08:00
Artem Polyakov
01601f3284 Merge pull request #305 from artpol84/timing
Timing framework improvement
2014-12-16 15:13:48 +06:00
George Bosilca
357daa834e Stay on the safe side: Only one thread is allowed
to handle an event_base.
2014-12-15 23:19:51 -05:00
George Bosilca
2fec570fe7 There is no need to keep track of these events. They are scheduled
as triggers in libevent, so one bookkepping should be enough.
2014-12-15 22:35:29 -05:00
George Bosilca
46baab350c The event is automatically deleted by default. 2014-12-15 21:59:20 -05:00
George Bosilca
b01abfa0d7 Don't over-do it! 2014-12-15 21:33:32 -05:00
George Bosilca
f87a4b691b Solve another handshake problem, where one threads was calling del_event
while cleaning up after receiving a zero byte on the connect socket
(localyy started connection), while another was trying to accept a
new connection from the same peer. Create a zero-timed event and
delocalize the accept into a timer_event.
Add support for registering an error callback, that can be used when a
connection is discovered as failed during the initialization process.
2014-12-15 20:27:32 -05:00
George Bosilca
e20413c885 Rearrange the code to remove a compiler complaint about
the missing return from a non-void function.
2014-12-15 15:42:57 -05:00
Ralph Castain
573a574a3c Remove an unused dstore type that was redundant with another one. Define a corresponding PMIX_NODE_ID type (contains the vpid of the daemon hosting the proc) and ensure that the PMIx server includes that info in its process map 2014-12-15 12:11:13 -08:00
Mike Dubman
2fbe87defe Merge pull request #314 from miked-mellanox/topic/fix_opal_path_nfs
add support for autofs and make check pass. jenkins: check,src_rpm
2014-12-15 20:52:52 +02:00
Ralph Castain
9658256a98 Restore the passing of the complete job map to the local proc on first get_attr so the info can be used by the MPI layer without continual calls back to the server. We'll find a more memory efficient method later. 2014-12-13 18:44:09 -08:00
Mike Dubman
42f3fa0d1e OPAL: add support for autofs magic type 2014-12-13 20:27:47 +02:00
Jeff Squyres
9e6b157cb6 opal: minor update to guess_strlen
This is a minor update to
open-mpi/ompi@c52601f0c5.

If we have vsnprintf(), we might as well not have the rest of the
guess_strlen() routine.  Also document the nifty trick/behavior of
vsnprintf() that enables this shortcut (it was new to me!).
2014-12-13 08:09:34 -05:00
George Bosilca
2edbe16c47 Add the necessary infrastructure to allow the dumping of all TCP
informations related to an endpoint (status and all pending fragments).
Do some minor space cleanup.
2014-12-13 01:59:55 -05:00
George Bosilca
5b8616d890 Fix the race condition in endpoint connection initialization. The race
was quite subtle, and only happened on the process with the smallest
guid (as this process will tear down the connection created locally and
replace it with the result of accept). If multiple threads are active in
the system, the deadlock occurs during the recv event deletion as one
thread will hold the recv event lock of the endpoint and try to access
the TCP event base lock, while the other thread will hold the TCP event
base lock while trying to access the recv event lock (in case data is
available on the socket).

The proposed solution let the event callback fail to process the data,
preventing the deadlock and allowing the other thread to always complete
it's job. As the event is not execute the same triggered will trigger
again at the next opportunity, so this solution introduce a minimal
delay in the connection establishement.
2014-12-13 01:45:00 -05:00
Ralph Castain
c52601f0c5 It looks like the guess_len function in our local printf.c has some questionable code in it. Now that we are checking in configure for vsnprintf, take advantage of that check to use the far simpler method if it is available. Given that we no longer support such ancient systems where this might not be available, one suspects the other questionable code may no longer be required - but set that aside for another day. 2014-12-12 17:47:17 -08:00
Ralph Castain
bffb2b7a4b Correct some issues with variables used before being set 2014-12-12 17:23:32 -08:00
Ralph Castain
0630680f36 Two cleanups required for transfer to 1.8.4:
* Use %d format for the topo signature as some systems apparently have problems with %u
* Use correct variable in show_help message
2014-12-12 17:23:32 -08:00
Howard Pritchard
6cf258638a mpool/udreg: minor comment improvement 2014-12-12 14:05:18 -07:00
Nathan Hjelm
38d66272c5 btl/vader: fix compile on SGI UV 2014-12-12 09:09:01 -07:00
Jeff Squyres
e4b3c6f1c4 libfabric psm: fix (void*) dereference
Committed upstream to libfabric as well.
2014-12-11 20:12:13 -08:00
Jeff Squyres
0f28233b35 libfabric: don't use __thread
There's no real reason that this routine should use thread local
storage.  Plus, __thread appears to be a GCC extension.
2014-12-11 14:10:48 -08:00
Rolf vandeVaart
9ee8e1dcf4 With PGI compile we need stdarg.h for va_list define 2014-12-11 16:14:57 -05:00
Jeff Squyres
4551cab6f1 help messages: fix obvious typos 2014-12-11 12:23:33 -08:00
Nathan Hjelm
7e5af9cecf opal_lifo: fix potential race condition when using 128-bit atomics
On x86_64 reading a 128-bit value requires multiple instructions.
Under some conditions if the counted pointer counter is read before
the item pointer the fifo can be left in an inconsistent state. This
commit forces the read of the counter to always be read first.

The fifo does not appear to suffer from the same race.
2014-12-10 12:51:44 -07:00
rolfv
f471b09ae9 Add support for CUDA Unified memory. Basically, add a new flag and disable some
optimizations when that flag is detected.  Lightly reviewed by bosilca.
2014-12-10 05:46:00 -08:00
Artem Polyakov
8ffad75a0a Introduce timing interval measurement facility in timing framework 2014-12-10 16:47:49 +06:00
Nathan Hjelm
52ed5a9bf8 opal_lifo: fix one more potential issue with the new 128-bit lifo atomics
It is possible the compiler can reorder the read of the head item and
the head itself. This could lead to a situation where the item
returned was not really the head item.
2014-12-09 21:48:14 -07:00
Nathan Hjelm
a40fe8311f opal_lifo: add missing memory barriers in 128-bit atomic functions 2014-12-09 19:50:08 -07:00
Jeff Squyres
e6c8bfc201 libfabric: Gah -- also remove the "pragma pop" line
Thanks to Nathan for pointing out that I missed snipping one line in
2f9c69f016 (I removed the trailing
comment, but not the trailing pragma -- oops!).
2014-12-09 14:03:39 -08:00
Jeff Squyres
2f9c69f016 libfabric: use correct C99 notation for var-length array
Nathan pointed out the correct C99 way to notate a variable-length
array in a struct.  This change has now been accepted upstream in
libfabric.
2014-12-09 13:33:15 -08:00
Nathan Hjelm
d0da29351f opal_progress: fix sched_yield check 2014-12-09 14:14:20 -07:00
Jeff Squyres
cd0a54d76f usnic: short term fix to enable builds on non-libfabric platforms
This isn't quite the Right fix yet, because it doesn't address usnic
for external libfabric builds.  I'll fix that separately / later.
2014-12-09 09:19:26 -08:00
Nathan Hjelm
b2b7ecc7c4 Merge pull request #300 from hjelmn/topic/atomic_lifo_fifo
Add opal_fifo_t class and rename opal_atomic_lifo_t to opal_lifo_t
2014-12-09 10:54:50 -06:00
Jeff Squyres
c40fd09d2a libfabric: fix providers to conditionally add libs/flags
Only allow the usnic and PSM providers to add CPPFLAGS and LIBADD
flags when they are going to be built.
2014-12-09 07:15:25 -08:00