Add PMIx 2.0
Remove PMIx 1.1.4
Cleanup copying of component
Add missing file
Touchup a typo in the Makefile.am
Update the pmix ext114 component
Minor cleanups and resync to master
Update to latest PMIx 2.x
Update to the PMIx event notification branch latest changes
If requested, obtain stacktraces for each application process and report it to stderr upon timeout
stack traces: minor improvements
- Also include the hostname and PID of the each process for which
we're sending the stack traces (vs. just including the ORTE process
name)
- Send a specific error message if we couldn't find "gstack" in the
$PATH (e.g., on OS X)
- Send a sepcific error message if gstack fails to run
- Print a message that obtaining the stack traces may take a few
seconds so that users don't wonder what's happening
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
help-orterun.txt: minor tweaks
Trivial update: show "--timeout" (instead of "-timeout") in the help
message, just to encourage the use of double-dash options.
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
trivial: stacktrace -> stack trace
Trivial word smything.
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
Take another shot at untangling the spaghetti
orterun: fix for command line parsing
orte-submit calls opal_init_util () before parsing out MCA command line
options (-mca, -am, etc). This prevents mpirun from setting opal MCA
variables for some frameworks as well as the MCA base. This is because
when a framework is opened all of its variables are set to read-only.
Eventually we want to lift this restriction on some MCA variables but
since -mca is affected we must parse out the MCA command line options
before opal_init_util(). This commit fixes the bug by adding a new
option to opal_cmd_line_parse (ignore unknown option) so orte-submit
can pre-parse the command line for MCA options.
Signed-off-by: Nathan Hjelm <hjelmn@me.com>
Minor cleanups to avoid releasing/recreating the cmd line
https://github.com/pmix/master/pull/71
Have OMPI's current version of pmix120 nicely fail in case of
too long sun_path (longer than 108 or in case of OSX 103 chars).
And have OMPI return proper error messages with hints how to
amend.
* provide a more reliable way of determining that a process is a singleton by leveraging the schizo framework. Add new components for slurm, alps, and orte to detect when we are in a managed environment, and if we have been launched by mpirun or a native launcher. Set the correct envars to control ess and pmix selection in each case.
* change the relative priority of the pmix120 and pmix112 components to make pmix120 the default
* fix singleton comm-spawn by correctly setting the num_apps field of the orte_job_t created by the daemon - this fixes a segfault in register_nspace on newly created daemons
* ensure orterun doesn't propagate any ess or pmix directives in its environment
* Cleanup a few valgrind issues and memory leaks
* Fix a race condition that prevented the client from completing notification registrations (missing thread shift)
* Ensure the shizo/alps component detects launch by mpirun
* Clean up the DVM so it continues to run even when applications error out and we would ordinarily abort the daemons.
* Create a new errmgr component for the DVM to handle the differences.
* Cleanup the DVM state component.
* Add ORTE bindings directory and brief README
* Pass a local tool index around to match jobs.
* Pass the jobid on job completion.
* Fix initialization logic.
* Add framework for python wrapper.
* Fix terminate-with-non-zero-exit behavior so it properly terminates only the indicated procs, notifies orte-submit, and orte-dvm continues executing.
* Add some missing options to orte-dvm
* Fix a bug in -host processing that caused us to ignore the #slots designator. Add a new attribute to indicate "do not expand the DVM" when submitting job spawn requests.
* It actually makes no sense that we treat the termination of all children differently than terminating the children of a specific job - it only creates confusion over the difference in behavior. So terminate children the same way regardless.
Extend the cmd_line utility to easily allow layering of command line definitions
Catch up with ORTE interface change and make build more generic.
Disable "fixed dvm" logic for now.
Add another cmd_line function to merge a table of cmd line options with another one, reporting as errors any duplicate entries. Use this to allow orterun to reuse the orted_submit code
Fix the "fixed_dvm" logic by ensuring we reset num_new_daemons to zero. Also ensure that the nidmap is sent with the first job so the downstream daemons get the node info. Remove a duplicate cmd line entry in orterun.
Revise the DVM startup procedure to pass the nidmap only once, at the startup of the DVM. This reduces the overhead on each job launch and ensures that the nidmap doesn't get overwritten.
Add new commands to get_orted_comm_cmd_str().
Move ORTE command line options to orte_globals.[ch].
Catch up with extra orte_submit_init parameter.
Add example code.
Add documentation.
Bump version.
The nidmap and routing data must be updated prior to propagating the xcast or else the xcast will fail.
Fix the return code so it is something more expected when an error occurs. Ensure we get an error returned to us when we fail to launch for some reason. In this case, we will always get a launch_cb as we did indeed attempt to spawn it. The error code will be returned in the complete_cb.
Fix the return code from orte_submit_job - it was returning the tracker index instead of "success". Take advantage of ORTE's pretty-print capabilities to provide a nice error output explaining why we failed to launch. Ensure we always get a launch_cb when we fail to launch, but no complete_cb as the job never launched.
Extend the error reporting capability to job completion as well.
Add index parameter to orte_submit_job().
Add orte_job_cancel and implement ORTE_DAEMON_TERMINATE_JOB_CMD.
Factor out dvm termination.
Parse the terminate option at tool level.
Add error string for ORTE_ERR_JOB_CANCELLED.
Add some safeguards.
Cleanup and/of comments.
Enable the return.
Properly ORTE_DECLSPEC orte_submit_halt.
Add orte_submit_halt and orte_submit_cancel to interface.
Use the plm interface to terminate the job
Update the configure logic for the new pmix120 component
ckpt
Get the pmix120 component to work - still not really registering or handling notifications, but infrastructure now operates
Cleanup some of the symbol scopes, and provide a more comprehensive rename.h file. Will pretty it up later - let's see how this works
Cleanup the rename files to use the pretty macros
NOTE: Building with external pmix *requires* that you also build with external libevent and hwloc libraries. Detect this at configure and error out with large message if this requirement is violated.
Closes#1204 (replaces it)
Fixes#1064
Rename the pmix1xx component to pmix111 so it reflects the actual release it includes
Resolve the problem of PMIx being passed a bogus --with-platform argument when configuring the PMIx tarball code. There is no reason we should be passing --with-platform arguments to any internal subdirectory, so just leave that out when constructing the opal_subdir_args variable.
Update the PMIx code and continue attempting to debug direct modex
Fix a problem in the ORTE PMIx server - there was an early intent to optimize the direct modex by fetching data for all procs from the target job on the remote node, instead of fetching the data one proc at a time. However, this was never completely implemented, and so we would hang if we had multiple overlapping requests for data from more than one proc on the node.
Update PMIx to v1.1.2
to continue current default behavior.
Also add an MCA param pmix_base_collect_data to direct that the blocking fence shall return all data to each process. Obviously, this param has no effect if async_
modex is used.
Bring Slurm PMI-1 component online
Bring the s2 component online
Little cleanup - let the various PMIx modules set the process name during init, and then just raise it up to the ORTE level. Required as the different PMI environments all pass the jobid in different ways.
Bring the OMPI pubsub/pmi component online
Get comm_spawn working again
Ensure we always provide a cpuset, even if it is NULL
pmix/cray: adjust cray pmix component for pmix
Make changes so cray pmix can work within the integrated
ompi/pmix framework.
Bring singletons back online. Implement the comm_spawn operation using pmix - not tested yet
Cleanup comm_spawn - procs now starting, error in connect_accept
Complete integration
* don't pass --tree-spawn to the orted cmd line. If someone doesn't want tree-spawn, it shows up as an MCA param anyway
* ensure state/orted component disqualifies itself from CM operations
* clarify the DVM proc_type definitions
* ensure we stop littering the tmp dir with session directories
This commit does two things. It removes checks for C99 required
headers (stdlib.h, string.h, signal.h, etc). Additionally it removes
definitions for required C99 types (intptr_t, int64_t, int32_t, etc).
Signed-off-by: Nathan Hjelm <hjelmn@me.com>
Changing the client to leave its socket as blocking during the connect doesn't solve the problem by itself - you also have to introduce a sleep delay once the backlog is hit to avoid simply machine-gunning your way thru retries. This gets somewhat difficult to adjust as you don't want to unnecessarily prolong startup time.
We've solved this before by adding a listening thread that simply reaps accepts and shoves them into the event library for subsequent processing. This would resolve the problem, but meant yet another daemon-level thread. So I centralized the listening thread support and let multiple elements register listeners on it. Thus, each daemon now has a single listening thread that reaps accepts from multiple sources - for now, the orte/pmix server and the oob/usock support are using it. I'll add in the oob/tcp component later.
This still didn't fully resolve the SMP problem, especially on coprocessor cards (e.g., KNC). Removing the shared memory dstore support helped further improve the behavior - it looks like there is some kind of memory paging issue there that needs further understanding. Given that the shared memory support was about to be lost when I bring over the PMIx integration (until it is restored in that library), it seemed like a reasonable thing to just remove it at this point.
A few uninitialized common symbols are remaining (generated by flex) :
* orte/mca/rmaps/rank_file/rmaps_rank_file_lex.c: orte_rmaps_rank_file_leng
* orte/mca/rmaps/rank_file/rmaps_rank_file_lex.c: orte_rmaps_rank_file_text
* orte/util/hostfile/hostfile_lex.c: orte_util_hostfile_leng
* orte/util/hostfile/hostfile_lex.c: orte_util_hostfile_text
Don't filter the topology by cpuset if you are mpirun until you know that no other compute nodes are involved. This deals with the corner case where mpirun is executing on a node of different topology from the compute nodes.
Simplify - don't mandate that all cpus in the given cpuset be present on every node. We can then run everything thru the filter as before, which ensures that any procs run on mpirun are also contained within the specified cpuset.
Correctly count the number of available PUs under each object when given a cpuset
Fix the default binding settings, and correctly count PUs when no cpuset is given
Ensure the binding policy gets set in all cases
