ports/openmpi
ports/openmpi
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George Bosilca
7dab8c002b
Fixed SPC/MPI_T initialization error. 
Signed-off-by: Yong Qin <yongq@mellanox.com>
 2019-05-28 15:10:32 -04:00
valentin petrov
2469f6ca13
Merge pull request #6708 from vspetrov/master 
Coll/hcoll: adding scatterv interface
 2019-05-27 20:22:00 +03:00
Sergey Oblomov
0b108411f8 SPML/UCX: added synchronized flush on quiet 
- added synchronized flush operation on quiet call.
- flush is implemented using get operation

Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
 2019-05-27 16:07:04 +03:00
Tomislav Janjusic
6ea920e225 Coll/hcoll: adding scatterv interface 
Signed-off-by: Valentin Petrov valentinp@mellanox.com
 2019-05-27 12:27:43 +03:00
Yossi Itigin
88503f0f8d
Merge pull request #6667 from hoopoepg/topic/alloc-with-hint-realloc-inplace 
ALLOC_WITH_HINT: added inplace realloc
 2019-05-26 11:12:55 +03:00
Sergey Oblomov
d6a0912024 OSHMEM: minor optimization of realloc in shadow allocator 
Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
 2019-05-24 09:16:56 +03:00
Edgar Gabriel
01db2585c4
Merge pull request #6702 from edgargabriel/topic/coverty-fixes-external32 
common/ompio: fix coverty warnings
 2019-05-23 15:00:22 -05:00
Edgar Gabriel
8eda9f2ecd common/ompio: fix coverty warnings 
this commmit fixes coverty warnings CID 1445198 and CID 1445197
For a reason that is a bit unclear to me, coverty only complained about the read
files, but the write operations had the same issue, so I fixed that within the
same commit as well.

Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
 2019-05-23 13:40:39 -05:00
Yossi Itigin
ad29f70c8a
Merge pull request #6698 from hoopoepg/topic/sshmem-mpi-coll-collect 
SSHMEM/COLL: added sshmem/mpi implementation for shmem_collect call
 2019-05-22 15:40:43 +03:00
Kurita, Takehiro
7ece564978 java: Fix compilation error in allToAllw using Java arrays 
Java bindings in Open MPI support Java arrays and direct buffers
as buffers. All non-blocking methods must use direct buffers and
only blocking methods can choose between Java arrays and
direct buffers.
Though Comm.allToAllw() is a blocking method, Java applications
using Java arrays as buffers get compilation errors.
This fix enables using Java arrays in Comm.allToAllw().

Signed-off-by: Kurita, Takehiro <fj6370fp@aa.jp.fujitsu.com>
 2019-05-22 10:00:16 +09:00
Nathan Hjelm
b78066720c btl/uct: add support for UCX 1.6.x 
This commit updates the uct btl to support the v1.6.x release of
UCX. This release breaks API.

Signed-off-by: Nathan Hjelm <hjelmn@cs.unm.edu>
 2019-05-21 04:31:57 -06:00
Sergey Oblomov
7d8cb75b2e SSHMEM/COLL: added sshmem/mpi implementation for shmem_collect call 
- added MPI based implementation of shmem_collect call

Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
 2019-05-21 11:42:10 +03:00
Edgar Gabriel
88b3b24101
Merge pull request #6697 from edgargabriel/topic/external32-v2 
Topic/external32 v2
 2019-05-20 19:11:11 -05:00
Edgar Gabriel
27b2ec71a7 common/ompio: add support for read operations and collective I/O 
external32 data representation is now support by ompio for everything
but non-blocking collective I/O operations. The support can further be improved
in a second step to limit the temporary buffer size (at least for blocking operations),
but it does work now for many scenarios.

Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
 2019-05-20 17:56:16 -05:00
Edgar Gabriel
ab56e6f0db common/ompio: make individual read operations work. 
Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
 2019-05-20 17:22:33 -05:00
Edgar Gabriel
f6b3a0af52 common/ompio: individual write of external32 works 
both blocking and non-blocking. collective write and read operations not yet.

Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
 2019-05-20 16:26:14 -05:00
Edgar Gabriel
d955753cb8 common/ompio: abstraction for different convertor types 
introduce separate convertors for memory vs. file representation. Adjust the interfaces for decode_datatype to provide the convertor to be used for that.

Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
 2019-05-20 13:35:38 -05:00
Edgar Gabriel
35be18b266 common/ompio: rename ompio_cuda* to ompio_buffer* 
the infrastructure put in place to manage cuda buffers is actually
a lot more generic than just for cuda buffers. Specifically, we ca
reuse much of the code to implement the external32 data representation.
This commit converts the code from common_ompio_cuda* to
common_ompio_buffer*. There are just very few places where we actually need to keep the OPAL_CUDA_SUPPORT ifdef in place.

Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
 2019-05-20 12:50:04 -05:00
Edgar Gabriel
a96efb7620 common/ompio: add comm_ompio_read_all/write_all functions 
in preparation for adding support for the external32 data
representation.

Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
 2019-05-20 12:49:36 -05:00
Yossi Itigin
d65fae11bd
Merge pull request #6693 from hoopoepg/topic/fixed-compilation-warnings 
SPML/UCX: fixed few compilation warnings
 2019-05-20 15:54:42 +03:00
Sergey Oblomov
421a7fd47d SPML/UCX: fixed few compilation warnings 
Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
 2019-05-20 14:40:24 +03:00
valentin petrov
5e0e1b63f3
Merge pull request #6690 from vspetrov/master 
Coll/hcoll: don't init opal memhooks unless explicitely requested
 2019-05-20 12:27:13 +03:00
Valentin Petrov
f19f6f432a Coll/hcoll: don't init opal memhooks unless explicitely requested by user 
If user sets HCOLL_EXTERNAL_UCM_EVENTS=1 then we try init opal
    memory framework and register a mem release cb. Otherwise, rely on ucx.

Signed-off-by: Valentin Petrov <valentinp@mellanox.com>
 2019-05-20 11:17:44 +03:00
Yossi Itigin
0c1da0fcab
Merge pull request #6687 from yosefe/topic/osc-ucx-fix-ud-self-deadlock 
OSC/UCX: Fix deadlock with atomic lock
 2019-05-20 09:50:20 +03:00
Yossi Itigin
9d1994b906 OSC/UCX: Fix deadlock with atomic lock 
Atomic lock must progress local worker while obtaining the remote lock,
otherwise an active message which actually releases the lock might not
be processed while polling on local memory location.

Signed-off-by: Yossi Itigin <yosefe@mellanox.com>
 2019-05-19 20:10:09 +03:00
Alex Anenkov
77d466edf3 coll/libnbc: add recursive doubling algorithm for MPI_Iallreduce 
Signed-off-by: Alex Anenkov <anenkov.ru@gmail.com>
 2019-05-19 18:39:11 +07:00
Yossi Itigin
61adcd9fc2
Merge pull request #6680 from hoopoepg/topic/suppressed-pml-ucx-mt-warning 
PML/UCX: disable PML UCX if MT is requested but not supported
 2019-05-19 10:21:46 +03:00
Sergey Oblomov
a3578d9ece PML/UCX: disable PML UCX if MT is requested but not supported 
- in case if multithreading requested but not supported
  disable PML UCX

Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
 2019-05-17 11:25:23 +03:00
Gilles Gouaillardet
5cfa1cf666
Merge pull request #6676 from ggouaillardet/topic/oshmem_no_orte 
oshmem: remove useless reference to orte header
 2019-05-17 16:35:37 +09:00
Gilles Gouaillardet
5c14f8439a oshmem: remove useless reference to orte header 
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2019-05-17 15:38:31 +09:00
Yossi Itigin
84ae05c7bc
Merge pull request #6675 from hoopoepg/topic/ucx-common-init-patcher-on-hooks-used-only 
COMMON/UCX: init memhooks infra on external hooks only
 2019-05-16 22:35:32 +03:00
Sergey Oblomov
ebc457baf5 COMMON/UCX: removed ucs stuff 
Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
 2019-05-16 20:56:30 +03:00
Sergey Oblomov
a0a9306066 COMMON/UCX: init memhooks infra on external hooks only 
- initialize memory hooks infrastructure only in case
  if external memory hooks are requested

Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
 2019-05-16 20:13:16 +03:00
Jeff Squyres
aaa0b57f50
Merge pull request #6654 from jdhayes/master 
Validate slurm params function.
 2019-05-16 12:12:21 -04:00
Sergey Oblomov
a51badd627 SHADOW ALLOCATOR: minor code optimization 
Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
 2019-05-16 09:38:01 +03:00
Jordan Hayes
7dad74032e plm_slurm_module: adjust for new SLURM CLI options 
SLURM 19 discontinued the use of --cpu_bind (and changed it to
--cpu-bind).  There's no easy way to test at run time which one is
accepted, so set the environment variable SLURM_CPU_BIND to "none",
which should do the same thing as the srun CLI parameter.

Signed-off-by: Jordan Hayes <jhayes@ucr.edu>
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2019-05-15 14:52:33 -07:00
Nathan Hjelm
3e1dd36241 btl/uct: check for support before disabling UCX memory hooks 
Signed-off-by: Nathan Hjelm <hjelmn@me.com>
 2019-05-15 13:49:10 -06:00
Sergey Oblomov
277c2a9e5c ALLOC_WITH_HINT: added implace realloc 
- in some cases realloc operation may be completed without
  allocation of new buffer (and without additional data copy)
- added logic to reallocate buffer inplace if possible

Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
 2019-05-15 19:37:38 +03:00
Yossi Itigin
7fe5c5431f
Merge pull request #6662 from yosefe/topic/oshmem-sshmem-mmap-sysv-hint-no-impl 
OSHMEM/MMAP/SYSV: Return ERR_NOT_IMPLEMENTED if segment hint != 0
 2019-05-15 17:09:49 +03:00
Jeff Squyres
4a420bb1e2
Merge pull request #6659 from jsquyres/pr/openmpi-specfile-minor-fix 
openmpi.spec: make sure grep failure doesn't abort
 2019-05-15 09:53:28 -04:00
Yossi Itigin
f7086746e9 OSHMEM/MMAP/SYSV: Return ERR_NOT_IMPLEMENTED if segment hint != 0 
Signed-off-by: Yossi Itigin <yosefe@mellanox.com>
 2019-05-15 16:12:19 +03:00
Yossi Itigin
fe5ad67127
Merge pull request #6657 from brminich/topic/fix_cov_errors 
SPML/UCX: Fix coverity error
 2019-05-15 12:29:35 +03:00
Jeff Squyres
013f5b03f5 openmpi.spec: make sure grep failure doesn't abort 
Thanks to Daniel Letai for bringing this to our attention.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2019-05-14 16:28:53 -07:00
Jeff Squyres
db0775974d
Merge pull request #6658 from jsquyres/pr/usnic-fix-coverity-cid-1445095 
usnic: fix Coverity false positives
 2019-05-14 18:22:29 -04:00
bosilca
6089608858
Merge pull request #6647 from bosilca/fix/length_0 
Fix/length 0
 2019-05-14 17:59:15 -04:00
Jeff Squyres
df5f7afb14 usnic: fix Coverity false positives 
Add some Coverity inline notation to tell Coverity that these
functions never return.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2019-05-14 13:53:25 -07:00
Mikhail Brinskii
d81dc533f6 SPML/UCX: Fix coverity error 
Signed-off-by: Mikhail Brinskii <mikhailb@mellanox.com>
 2019-05-14 22:34:01 +03:00
Jeff Squyres
9442989e2c
Merge pull request #6382 from jsquyres/pr/ofi-mtl-gitignore 
mtl/ofi: add a .gitignore
 2019-05-13 12:00:41 -04:00
Yossi Itigin
4e356cd788
Merge pull request #6653 from hoopoepg/topic/suppressed-coverity-issue 
OSHMEM/free: suppressed coverity issue
 2019-05-13 15:06:30 +03:00
Sergey Oblomov
4df8c1b3e3 OSHMEM/free: suppressed coverity issue 
- removed dead code

Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
 2019-05-13 11:59:02 +03:00