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Автор SHA1 Сообщение Дата
Ryan Grant
e5ea2e3248 Merge pull request #1193 from tkordenbrock/topic/fix.btl.logical.endpoint.rank
btl-portals4: set endpoint rank even if endpoint already exists

--Needs to be pulled over to 2.0.0 still @tkordenbrock
2015-12-09 13:49:44 -08:00
Nathan Hjelm
645d4099d4 Merge pull request #1197 from artpol84/comm_create_fix
Fix ompi_comm_create when source communicator is inter-communicator.
2015-12-09 09:18:24 -08:00
Artem Polyakov
ee71e35a90 Fix ompi_comm_create when source communicator is inter-communicator.
This bug was triggered by probe-intercom and icm tests from MPICH suite.
2015-12-09 15:44:26 +02:00
Gilles Gouaillardet
3a62341b30 Merge pull request #1189 from ggouaillardet/topic/empty_ddt_fix
ddt: duplicate MPI_DATATYPE_NULL when ompi_datatype_create_indexed of…
2015-12-09 15:29:03 +09:00
Jeff Squyres
00c5dc9449 rml oob: C99-ification of structure member assignment 2015-12-08 17:05:16 -08:00
Howard Pritchard
c2ea018ce5 Merge pull request #1194 from hppritcha/topic/fix_cray_pmix_locality
pmix/cray: fix locality bug
2015-12-08 16:25:30 -07:00
Howard Pritchard
cb7c26ce96 plm/slurm: add support for cray native slurm
Cray has added plugins to slurm to support
the Cray programming env (alpslli, cray pmi, etc).
Some of the workarounds needed with plm/alps
to avoid issues with Cray PMI getting mixed up
with orte launch system are also required in
a cray native slurm environment.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2015-12-08 13:47:20 -06:00
Howard Pritchard
fecb326256 pmix/cray: fix locality bug
There was a bug with the way the cray pmix component
was setting the locality property for ranks on the
same node, etc.

Improve location/syntax of a comment block.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2015-12-08 11:13:48 -08:00
Todd Kordenbrock
2b7e983989 btl-portals4: set endpoint rank even if endpoint already exists
If btl-portals4 is configured to use logical mapping of ranks to
physical nodes, then the endpoint must have the rank field set.
This commit fixes a bug that caused the endpoint to have the
nid/pid instead of the rank if the endpoint already exists.
2015-12-08 12:29:00 -06:00
Nathan Hjelm
2ff16c6ba5 Merge pull request #1192 from hjelmn/mlx5_atomics_fix
mlx5: need to set comp_mask to get experimental verbs attributes
2015-12-08 11:20:37 -07:00
Nathan Hjelm
f317ba5262 Merge pull request #1163 from hjelmn/ompi_proc_threads
ompi/proc: make proc system always thread safe
2015-12-08 10:36:55 -07:00
Nathan Hjelm
c9382f23e9 mlx5: need to set comp_mask to get experimental verbs attributes
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-12-08 10:34:16 -07:00
Nathan Hjelm
b47a64f27d Merge pull request #1188 from artpol84/intercomm_split_fix
Yet one more fix to intercommunicator splitting logic.
2015-12-08 07:09:46 -07:00
Nathan Hjelm
dae3746d2f Merge pull request #1190 from kawashima-fj/pr/sm-win-test-fix
osc/sm: Fix a bug that `MPI_WIN_TEST` does not update `flag` to 0
2015-12-08 06:39:16 -07:00
KAWASHIMA Takahiro
9c7b6a4352 osc/sm: Fix a bug that MPI_WIN_TEST does not update flag to 0.
`MPI_WIN_TEST` must update the `flag` parameter to 0 when not all
origin processes called `MPI_WIN_COMPLETE`. But sm OSC doesn't.
If the caller initialize the `flag` argument to a non-0 value,
the caller will receive the non-0 `flag` value.
2015-12-08 19:23:21 +09:00
Gilles Gouaillardet
59a361b781 ompio: correctly handle zero f_cc_size in mca_io_ompio_simple_grouping 2015-12-08 17:00:11 +09:00
Gilles Gouaillardet
d43ad3fada ddt: duplicate MPI_DATATYPE_NULL when ompi_datatype_create_indexed of ompi_datatype_create_indexed_block is invoked with a zero count 2015-12-08 16:25:36 +09:00
Artem Polyakov
7690f4027a Yet one more fix to intercommunicator splitting logic.
Previous commit f2794740 reverts Nathans changes. However it turns out
that I was unable to trace his logic until I started investigation of
icsplit hang. Bug was triggered when splitting Intercom was giving a group
where on side of the communicator was empty (icsplit, intercom create #2).
in this case remote_size == 0 and there is no way to distinguish between
inter- and intra-communicator.
Conclusion: We do need to distinguish between intra- and inter-communicators.
So we should use ompi_mpi_group_null.group.
2015-12-08 08:43:08 +02:00
Nathan Hjelm
63d8feb31c Merge pull request #1187 from hjelmn/bsend_fix
pml/ob1: add missing ompi_request_wait_completion for buffered sends
2015-12-07 23:09:04 -07:00
Nathan Hjelm
f68c315188 pml/ob1: add missing ompi_request_wait_completion for buffered sends
This commit adds a call to ompi_request_wait_completion for buffered
sends. Without this line it is possible to get into a state where the
data is never sent.

Fixes open-mpi/ompi#1185

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-12-07 22:28:07 -07:00
Artem Polyakov
90b4148f9b Merge pull request #1184 from artpol84/intercomm_split_fix
Fix intercommunicator split (was triggered by MPICH/icsend test)
2015-12-08 08:46:38 +05:00
Nathan Hjelm
eb830b9501 ompi_proc_pack: correctly handle proc sentinels
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-12-07 17:27:38 -07:00
Howard Pritchard
9548b8a9e8 plm/alps: add wlm detect infrastructure
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2015-12-07 07:43:20 -08:00
Artem Polyakov
f2794740b3 Fix intercommunicator split (was triggered by MPICH/icsend test) 2015-12-07 15:41:29 +02:00
rhc54
04fc4060db Merge pull request #1143 from rhc54/topic/noompi
Fix "autogen.pl --no-ompi"
2015-12-07 00:40:16 -08:00
Gilles Gouaillardet
4d2c7f7de1 cuda: fix missing #include opal/util/argv.h 2015-12-07 14:10:32 +09:00
Ralph Castain
e33515c87c Fix "autogen.pl --no-ompi", which was broken due to inclusion of a conditional in the test/monitoring Makefile.am that is only defined if OMPI is built.
Per suggestion from @bosilca, comment out generation of the shared library

Use the patch from Gilles instead
2015-12-06 21:10:17 -08:00
Gilles Gouaillardet
bfe8e03d9d fcoll/two_phase: use ompi_mpi_abort instead of PMPI_Abort
Thanks Jeff for the review
2015-12-07 11:34:36 +09:00
Gilles Gouaillardet
ef03bc726c ompi: fix comment in ompi/mpi/c/Makefile.am
Thanks Jeff for the review
2015-12-07 11:34:01 +09:00
Gilles Gouaillardet
37c978f5e9 coll/libnbc: correctly handle changed types.
this fixes open-mpi/ompi@d816d1c194
thanks Jeff for the review
2015-12-07 10:13:43 +09:00
Gilles Gouaillardet
26b2ed1069 fortran: add missing MPI_xxx_DUP_FN bindings in use-mpi-tkr
- MPI_COMM_DUP_FN
- MPI_TYPE_DUP_FN
- MPI_WIN_DUP_FN
2015-12-07 09:10:48 +09:00
Howard Pritchard
d7b437ecaa Merge pull request #1157 from gpichot/adds-darwin-headers-for-java
Adds darwin headers directory for Darwin JDK
2015-12-06 14:49:53 -07:00
George Bosilca
3a9664ac9d Fix Coverity CIDs 1341584-1341589. 2015-12-06 14:06:36 -05:00
Gabriel Pichot
ff5af73676 Adds usage of /usr/libexec/java_home for OS X platforms 2015-12-05 11:51:51 +01:00
Ralph Castain
10db7ebfab Update the symbol-hiding script to capture a broader range of symbols 2015-12-04 21:05:57 -08:00
rhc54
1568d6b33c Merge pull request #1181 from rhc54/topic/tools
Provide a mechanism by which a tool can request async progress thread support for ORTE
2015-12-04 12:24:05 -08:00
Ralph Castain
8823069fe9 Provide a mechanism by which a tool can request async progress thread support for ORTE 2015-12-04 08:26:57 -08:00
Jeff Squyres
ad35a363fa Merge pull request #1179 from jsquyres/pr/mpi-testsome-man-page-update
Pr/mpi testsome man page update
2015-12-04 05:55:33 -05:00
bosilca
8fee96c086 Merge pull request #1091 from bosilca/topic/datatype_span
Cleanup the temporary memory allocation in collectives
2015-12-03 19:25:04 -05:00
Jeff Squyres
0adcb5b5cd MPI_Testsome.3in: wrap some long lines
Wrap some long lines; no other text or semantics changes.
2015-12-03 17:06:43 -05:00
Jeff Squyres
11c571b568 MPI_Testsome.3in: add explicit verbiage about return values
Instead of solely relying on the out value definitions in
MPI_Waitsome.3, explicitly copy this text here.

Note that the original text in this man page was copied verbatim from
the MPI spec; we've now added a bit more text (copied from
MPI_Waitsome.3in) that explains the out values so that users don't
have to cross-reference to another man page.

Thanks to Eric Schnetter for the suggestion.

Fixes open-mpi/ompi#1153
2015-12-03 17:06:22 -05:00
Mike Dubman
dc3b138b7f Merge pull request #1178 from igor-ivanov/pr/oshmem-fix-preconnect_all
oshmem: Add skew to the oshmem_preconnect_all
2015-12-03 21:00:52 +02:00
Jeff Squyres
a25cf8065d Merge pull request #1176 from igor-ivanov/pr/oshmem-rm-java
oshmem: Remove JAVA support
2015-12-03 13:26:09 -05:00
Igor Ivanov
c4fc1ec081 oshmem: Add skew to the oshmem_preconnect_all 2015-12-03 18:32:26 +02:00
Igor Ivanov
63bc655b53 oshmem: Remove JAVA support
There is a conclusion to remove java support
(see https://github.com/open-mpi/ompi-release/pull/787)
2015-12-03 11:59:07 +02:00
Gilles Gouaillardet
a5440ade5f topo/treematch: do not invoke hwloc_topology_{init,load}
* this is not necessary
 * this overwrites existing topology, that could be different if hwloc_base_topo_file is used
2015-12-03 11:24:32 +09:00
George Bosilca
688108cf7f Patch submitted by @ggouaillardet on ticket #1091. 2015-12-02 20:42:18 -05:00
George Bosilca
4d00c59b2e Cleanup the memory handling for temporary buffers in
some of the collective modules. Added a new function
opan_datatype_span, to compute the memory span of
count number of datatype, excluding the gaps in the
beginning and at the end. If a memory allocation is
made using the returned value, the gap (also returned)
should be removed from the allocated pointer.
2015-12-02 20:42:18 -05:00
igor-ivanov
3def93ab60 Merge pull request #1169 from igor-ivanov/pr/oshmem-fix-scan-coverity
oshmem: Fix scan coverity issues
2015-12-02 18:37:44 +04:00
Igor Ivanov
5c061abf4e oshmem: Fix scan coverity issues
1324740 - Resource leak
1304562 - Unchecked return value
1340514 - Dereference before null check
1340515 - Use of untrusted scalar value
1340516 - Use of untrusted string value
2015-12-02 12:49:19 +02:00