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Граф коммитов

81 Коммитов

Автор SHA1 Сообщение Дата
Gilles Gouaillardet
18d3897479 fs/ufs: add some more error codes on file_open
set proper error codes in mca_fs_ufs_file_open by mapping the errno value to
the MPI error code.

Refs. open-mpi/ompi#4443

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-11-07 11:09:32 +09:00
Edgar Gabriel
91881c4fdc fs/lustre: update component to match fs/ufs
the fs/lustre component has missed out on a number of updates to the fs/ufs component.
This commit tries to import all the changes performed on the fs/ufs component
w.r.t to the file_open operation, including updates on how the amode is set,
error is propegated and setting the fs_block_size value (which is required for
locking purposes).

Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
2017-11-03 16:11:46 -05:00
Edgar Gabriel
1885d99ac7 fs/ufs: set proper error codes on file_open
set proper error codes in mca_fs_ufs_file_open by mapping the errno value to
the MPI error code. Fixes an issue reported on the mailing by Wei-keng Liao

Fixes Issue #4443

Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
2017-11-03 16:06:31 -05:00
Edgar Gabriel
be0de21e6f fs/ufs and fbtl/posix: cleanup lock management
This commit looks large, but its really mostly a cleanup step.
1. introduce proper error handling for the return values of fcntl and the fbtl_posix_lock function
2. rename a parameter to more accurately reflect what it does
3. introduce an mca parameter in the fs/ufs component that allows to control
   what the level of locking the user would like to enforce
4. move the initialization of the fs_block_size parameter from fs/ufs into the
   common/ompio component. An fs component might be allowed to overwrite this
   value, but none of the actual fs components do that.

Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
2017-10-19 14:56:28 -05:00
Edgar Gabriel
e62f9d2e52 fs/ufs: ensure that the never-lock flag is set if not on NFS
Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
2017-10-19 13:32:40 -05:00
Edgar Gabriel
f66c55f77a fbtl/posix: fixes in the offset calculation and for aio operations
our own internal testsuite passes now correctly. More testing to follow.

Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
2017-10-19 13:32:39 -05:00
Gilles Gouaillardet
b9315edb85 configury: remove the --disable-mpi-io option
Fixes open-mpi/ompi#2185

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-09-20 14:39:09 +09:00
Joshua Hursey
e1d079544b mca: Dynamic components link against project lib
* Resolves #3705
 * Components should link against the project level library to better
   support `dlopen` with `RTLD_LOCAL`.
 * Extend the `mca_FRAMEWORK_COMPONENT_la_LIBADD` in the `Makefile.am`
   with the appropriate project level library:
```
MCA components in ompi/
       $(top_builddir)/ompi/lib@OMPI_LIBMPI_NAME@.la
MCA components in orte/
       $(top_builddir)/orte/lib@ORTE_LIB_PREFIX@open-rte.la
MCA components in opal/
       $(top_builddir)/opal/lib@OPAL_LIB_PREFIX@open-pal.la
MCA components in oshmem/
       $(top_builddir)/oshmem/liboshmem.la"
```

Note: The changes in this commit were automated by the script in
the commit that proceeds it with the `libadd_mca_comp_update.py`
script. Some components were not included in this change because
they are statically built only.

Signed-off-by: Joshua Hursey <jhursey@us.ibm.com>
2017-08-24 11:56:16 -04:00
Edgar Gabriel
bc8f642211 fs/lustre: update lustre header file used in the component
liblustreapi.h is at this point deprecated. Switch to lustreapi.h instead

fixes issue #3223

Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
2017-07-17 10:33:52 -05:00
Mark Allen
482d84b6e5 fixes for Dave's get/set info code
The expected sequence of events for processing info during object creation
is that if there's an incoming info arg, it is opal_info_dup()ed into the obj
at obj->s_info first. Then interested components register callbacks for
keys they want to know about using opal_infosubscribe_infosubscribe().

Inside info_subscribe_subscribe() the specified callback() is called with
whatever matching k/v is in the object's info, or with the default. The
return string from the callback goes into the new k/v stored in info, and
the input k/v is saved as __IN_<key>/<val>. It's saved the same way
whether the input came from info or whether it was a default. A null return
from the callback indicates an ignored key/val, and no k/v is stored for
it, but an __IN_<key>/<val> is still kept so we still have access to the
original.

At MPI_*_set_info() time, opal_infosubscribe_change_info() is used. That
function calls the registered callbacks for each item in the provided info.
If the callback returns non-null, the info is updated with that k/v, or if
the callback returns null, that key is deleted from info. An __IN_<key>/<val>
is saved either way, and overwrites any previously saved value.

When MPI_*_get_info() is called, opal_info_dup_mpistandard() is used, which
allows relatively easy changes in interpretation of the standard, by looking
at both the <key>/<val> and __IN_<key>/<val> in info. Right now it does
  1. includes system extras, eg k/v defaults not expliclty set by the user
  2. omits ignored keys
  3. shows input values, not callback modifications, eg not the internal values

Currently the callbacks are doing things like
    return some_condition ? "true" : "false"
that is, returning static strings that are not to be freed. If the return
strings start becoming more dynamic in the future I don't see how unallocated
strings could support that, so I'd propose a change for the future that
the callback()s registered with info_subscribe_subscribe() do a strdup on
their return, and we change the callers of callback() to free the strings
it returns (there are only two callers).

Rough outline of the smaller changes spread over the less central files:
  comm.c
    initialize comm->super.s_info to NULL
    copy into comm->super.s_info in comm creation calls that provide info
    OBJ_RELEASE comm->super.s_info at free time
  comm_init.c
    initialize comm->super.s_info to NULL
  file.c
    copy into file->super.s_info if file creation provides info
    OBJ_RELEASE file->super.s_info at free time
  win.c
    copy into win->super.s_info if win creation provides info
    OBJ_RELEASE win->super.s_info at free time

  comm_get_info.c
  file_get_info.c
  win_get_info.c
    change_info() if there's no info attached (shouldn't happen if callbacks
      are registered)
    copy the info for the user

The other category of change is generally addressing compiler warnings where
ompi_info_t and opal_info_t were being used a little too interchangably. An
ompi_info_t* contains an opal_info_t*, at &(ompi_info->super)

Also this commit updates the copyrights.

Signed-off-by: Mark Allen <markalle@us.ibm.com>
2017-05-17 01:12:49 -04:00
David Solt
50aa143ab6 Major structural changes to data types: .super infosubscriber
ompi_communicator_t, ompi_win_t, ompi_file_t all have a super class of type opal_infosubscriber_t instead of a base/super type of opal_object_t (in previous code comm used c_base, but file used super).  It may be a bit bold to say that being a subscriber of MPI_Info is the foundational piece that ties these three things together, but if you object, then I would prefer to turn infosubscriber into a more general name that encompasses other common features rather than create a different super class.  The key here is that we want to be able to pass comm, win and file objects as if they were opal_infosubscriber_t, so that one routine can heandle all 3 types of objects being passed to it.

MPI_INFO_NULL is still an ompi_predefined_info_t type since an MPI_Info is part of ompi but the internal details of the underlying information concept is part of opal.

An ompi_info_t type still exists for exposure to the user, but it is simply a wrapper for the opal object.

Routines such as ompi_info_dup, etc have all been moved to opal_info_dup and related to the opal directory.

Fortran to C translation tables are only used for MPI_Info that is exposed to the application and are therefore part of the ompi_info_t and not the opal_info_t

The data structure changes are primarily in the following files:

    communicator/communicator.h
    ompi/info/info.h
    ompi/win/win.h
    ompi/file/file.h

The following new files were created:

    opal/util/info.h
    opal/util/info.c
    opal/util/info_subscriber.h
    opal/util/info_subscriber.c

This infosubscriber concept is that communicators, files and windows can have subscribers that subscribe to any changes in the info associated with the comm/file/window.  When xxx_set_info is called, the new info is presented to each subscriber who can modify the info in any way they want.  The new value is presented to the next subscriber and so on until all subscribers have had a chance to modify the value.  Therefore, the order of subscribers can make a difference but we hope that there is generally only one subscriber that cares or modifies any given key/value pair.  The final info is then stored and returned by a call to xxx_get_info.

The new model can be seen in the following files:

    ompi/mpi/c/comm_get_info.c
    ompi/mpi/c/comm_set_info.c
    ompi/mpi/c/file_get_info.c
    ompi/mpi/c/file_set_info.c
    ompi/mpi/c/win_get_info.c
    ompi/mpi/c/win_set_info.c

The current subscribers where changed as follows:

    mca/io/ompio/io_ompio_file_open.c
    mca/io/ompio/io_ompio_module.c
    mca/osc/rmda/osc_rdma_component.c (This one actually subscribes to "no_locks")
    mca/osc/sm/osc_sm_component.c (This one actually subscribes to "blocking_fence" and "alloc_shared_contig")

Signed-off-by: Mark Allen <markalle@us.ibm.com>

Conflicts:
	AUTHORS
	ompi/communicator/comm.c
	ompi/debuggers/ompi_mpihandles_dll.c
	ompi/file/file.c
	ompi/file/file.h
	ompi/info/info.c
	ompi/mca/io/ompio/io_ompio.h
	ompi/mca/io/ompio/io_ompio_file_open.c
	ompi/mca/io/ompio/io_ompio_file_set_view.c
	ompi/mca/osc/pt2pt/osc_pt2pt.h
	ompi/mca/sharedfp/addproc/sharedfp_addproc.h
	ompi/mca/sharedfp/addproc/sharedfp_addproc_file_open.c
	ompi/mca/topo/treematch/topo_treematch_dist_graph_create.c
	ompi/mpi/c/lookup_name.c
	ompi/mpi/c/publish_name.c
	ompi/mpi/c/unpublish_name.c
	opal/mca/mpool/base/mpool_base_alloc.c
	opal/util/Makefile.am
2017-05-12 14:41:05 -04:00
Jeff Squyres
c81bc50198 fs/lustre: remove redundant/dead code
We check for liblustreapi.h in OMPI_CHECK_LUSTRE, so this code was
commented out here.  Might as well fully delete it, since it's
redundant and dead.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2017-05-05 05:28:33 -07:00
Gilles Gouaillardet
fa5cd0dbe5 use ptrdiff_t instead of OPAL_PTRDIFF_TYPE
since Open MPI now requires a C99, and ptrdiff_t type is part of C99,
there is no more need for the abstract OPAL_PTRDIFF_TYPE type.

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-04-19 13:41:56 +09:00
George Bosilca
366d64b7e5 Move the collective structure outside the communicator.
As we changed the ABI (forcing a major release), we can limit
the size of the predefined communicators by moving the collective
structure outside the communicator. This might have a minimal,
but unnoticeable, impact on performance. This approach has been
discussed during the January 2017 devel meeting.

Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
Signed-off-by: Joshua Hursey <jhursey@us.ibm.com>
2017-02-27 11:54:17 -06:00
Edgar Gabriel
cbb3cb9745 fs/ufs: avoid using the exclusive flag with shared file pointer
when a file is opened a second time for shared file pointer operations,
avoid setting the create and exclusive flag.

Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
2017-01-24 12:11:29 -06:00
Ralph Castain
1e2019ce2a Revert "Update to sync with OMPI master and cleanup to build"
This reverts commit cb55c88a8b.
2016-11-22 15:03:20 -08:00
Ralph Castain
cb55c88a8b Update to sync with OMPI master and cleanup to build
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2016-11-22 14:24:54 -08:00
Gilles Gouaillardet
1ef2ad029f fs: do not build the fs components configured with --disable-io-ompio 2016-10-07 13:15:04 +09:00
Edgar Gabriel
2c8437ce62 fs/pvfs2: fix a common symbol 2016-08-17 13:10:32 -05:00
Edgar Gabriel
ccf76b7791 moving the internal read/write functions to common/ompio
and update all fs/fcoll/sharedfp components to use these functions.
2016-07-21 13:08:32 -05:00
Gilles Gouaillardet
99fedcb7a3 fs/base: silence a memory leak in mca_fs_base_get_fstype()
Fixes CID 1351211
2016-06-06 09:20:14 +09:00
Edgar Gabriel
78fa8bb2c4 remove some unused variables that can cause compilation problems on netbsd 2016-05-03 10:25:15 -05:00
Edgar Gabriel
b4a725c26a need to check for the parent dir as well, since the file might not exist yet. 2016-01-26 13:49:21 -06:00
Edgar Gabriel
722aab92e6 - extend opal_path_nfs to retrieve the file system type
- use opal_path_nfs in the fs_base function to avoid code duplication.
2016-01-26 13:36:21 -06:00
Edgar Gabriel
56e11bfc97 initialize the stripe_size variable as well. 2016-01-17 09:48:49 -06:00
Edgar Gabriel
2bdd6ba17a correctly free some buffers, and ensure that lustre_stripe_size and stripe_count are always read from the file system. 2016-01-17 09:48:49 -06:00
Edgar Gabriel
4bbb22bd0b add a new field to the ompio data structure (stripe_count) and set it correctly on pvfs2 and lustre. 2016-01-17 09:48:49 -06:00
Edgar Gabriel
1b0b849994 remove the MCA parameter setting the number of hosts in PLFS, since the plfs_setxattr function used is causing linking problems with PLFS 2.5
remove unused variables.
2016-01-05 11:13:23 -06:00
Edgar Gabriel
da309ac962 - use a unique pid for each process as requested by the API
- sync the file before closing it
- use plfs_access() instead of access() before closing the file
2016-01-05 10:04:12 -06:00
Gilles Gouaillardet
14fdf75944 fs/pvfs2: fix typo
Thanks Dave Love for reporting this issue.

Fixes #1272
2016-01-03 23:28:35 +09:00
Gilles Gouaillardet
fe351f6801 io: do not cast way the const modifier when this is not necessary
update the io framework and mpi c bindings
2015-09-09 09:18:58 +09:00
Edgar Gabriel
9f369ba515 move the inclusion of the lustre_user and lliblustreapi header files to the fs_lustre.h file. 2015-08-13 15:36:16 -05:00
Edgar Gabriel
55f0e1a1f8 fix the lustre compilation problems for older lustre versions. Add the prototype for the static function to avoid a warning message. 2015-08-12 09:45:07 -05:00
Edgar Gabriel
477083bca3 the memory chunk that has to be allocated for the llapi_get_stripe function seems to have changed compared to earlier version. This implementation now follows the code snipplet from the man pages. 2015-07-29 17:13:55 -05:00
Edgar Gabriel
217dcca853 - the memory chunk that has to be allocated for the llapi_get_stripe function seems to have changed compared to earlier version. This implementation now follows the code snipplet from the man pages.
- implementation of file_get_size and set_size
2015-07-29 17:10:39 -05:00
Edgar Gabriel
e355db005e fix the logic for setting stripe size and stripe count in the lustre fs module. Takes now also the MPI_Info object into consideration. 2015-07-14 10:53:19 -05:00
Ralph Castain
869041f770 Purge whitespace from the repo 2015-06-23 20:59:57 -07:00
Nathan Hjelm
df75d0382f ompi: use C99 subobject naming for component initialization
This commit helps future-proof ompi components by initializing each
component member by name.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-04-18 10:29:58 -06:00
Nathan Hjelm
b68d66bb9b MCA: Add the project/project version to the MCA base component
This commit adds support for project_framework_component_* parameter
matching. This is the first step in allowing the same framework name
in multiple projects. This change also bumps the MCA component version
to 2.1.0.

All master frameworks have been updated to use the new component
versioning macro. An mca.h has been added to each project to add a
project specific versioning macro of the form
PROJECT_MCA_VERSION_2_1_0.

Signed-off-by: Nathan Hjelm <hjelmn@me.com>
2015-03-27 10:59:04 -06:00
Gilles Gouaillardet
59f298a534 fs/base: securily use readlink
as reported by Coverity with CIDs 1287031 and 1287032
2015-03-09 11:20:51 +09:00
Gilles Gouaillardet
e75b1e6435 fs/base: fix misc memory leak
as reported by Coverity with CID 72202
2015-03-05 14:20:08 +09:00
Howard Pritchard
bf89131f9e add owner files to opa/ompi/orte mca directories
This commit adds an owner file in each of the component directories
for each framework.  This allows for a simple script to parse
the contents of the files and generate, among other things, tables
to be used on the project's wiki page.  Currently there are two
"fields" in the file, an owner and a status.  A tool to parse
the files and generate tables for the wiki page will be added
in a subsequent commit.
2015-02-22 15:10:23 -07:00
Edgar Gabriel
03c2adf3b1 part 2 of the cleaning up of info handling in ompio. The set_info interface
in the fs modules does not make sense and was not used. Remove them.
2015-01-30 16:48:41 -06:00
Edgar Gabriel
0219c87039 set the fs_ptr to NULL in case of an error, to avoid a malicious free on file_close. 2014-10-14 13:09:06 -05:00
Ralph Castain
552c9ca5a0 George did the work and deserves all the credit for it. Ralph did the merge, and deserves whatever blame results from errors in it :-)
WHAT:    Open our low-level communication infrastructure by moving all necessary components (btl/rcache/allocator/mpool) down in OPAL

All the components required for inter-process communications are currently deeply integrated in the OMPI layer. Several groups/institutions have express interest in having a more generic communication infrastructure, without all the OMPI layer dependencies.  This communication layer should be made available at a different software level, available to all layers in the Open MPI software stack. As an example, our ORTE layer could replace the current OOB and instead use the BTL directly, gaining access to more reactive network interfaces than TCP.  Similarly, external software libraries could take advantage of our highly optimized AM (active message) communication layer for their own purpose.  UTK with support from Sandia, developped a version of Open MPI where the entire communication infrastucture has been moved down to OPAL (btl/rcache/allocator/mpool). Most of the moved components have been updated to match the new schema, with few exceptions (mainly BTLs where I have no way of compiling/testing them). Thus, the completion of this RFC is tied to being able to completing this move for all BTLs. For this we need help from the rest of the Open MPI community, especially those supporting some of the BTLs.  A non-exhaustive list of BTLs that qualify here is: mx, portals4, scif, udapl, ugni, usnic.

This commit was SVN r32317.
2014-07-26 00:47:28 +00:00
Ralph Castain
a8e2d6c3a6 The bulk of the remaining renaming changes, in one final glorious "blob". Thanks to Jeff for some help chasing down a few spots. Per chat with Jeff, we decided to cleanup a few things that were historical in nature:
top_ompi_srcdir  ->  OMPI_TOP_SRCDIR
top_ompi_builddir -> OMPI_TOP_BUILDDIR

We also split the srcdir/builddir flags according to their local tree (e.g., OPAL_TOP_SRCDIR), and tied them all together in configure.ac. Renamed ompi_ignore and ompi_unignore to be opal_<foo> as these are agnostic markers.

Only thing left is ompilibdir being treated similar to what we dif for srcdir/builddir. Coming soon.

This commit was SVN r31678.
2014-05-07 21:48:53 +00:00
Hadi Montakhabi
7bf4c425ff Fix: making sure the file type is not overwritten by the last queried component
This commit was SVN r30478.
2014-01-29 19:21:03 +00:00
Hadi Montakhabi
8af6b8b4e4 add support for PLFS filesystem
This commit was SVN r30370.
2014-01-22 21:16:15 +00:00
Edgar Gabriel
be5d5834c5 fix the problem identified by a user on the mailing list with MPI_MODE_EXCL
cmr=v1.7.4:reviewer=vvenkatesan:subject=fix a problem when opening a file with MODE_EXCL

This commit was SVN r30324.
2014-01-18 16:06:27 +00:00
Hadi Montakhabi
8c14411289 f_cc_size is contiguous chunk size, not the stripe width. There is no stripe_width in the file handle structure.
This commit was SVN r30314.
2014-01-17 18:35:55 +00:00