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436 Коммитов

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Ralph Castain
a0d5c80ce0 Add a new framework for discovering local resource information such as cpu type/model, #cpus, available physical memory, etc. Two initial components (darwin and linux) are provided. This is needed to support bootstrap operations where daemons are started at node boot, and applications where initial knowledge of cpu identification is needed to guide framework component selection.
Add orte configuration option to control the use of the framework in the system. Although the code will build, it will not be active unless configured with --enable-bootstrap.

If bootstrap is enabled and the new opal_sysinfo framework can successfully determine the cpu model, pass that info to the application as an MCA param to support some work at Sun.

Also, have daemons report back the resources they find to guide process mapping in bootstrap operations (i.e., where the daemon starts at node boot as opposed to being launched at application start).

Adjust some platform files to enable these capabilities.

This commit was SVN r22244.
2009-11-30 23:11:25 +00:00
Ralph Castain
a401f05ea3 Add some diagnostics to chase down forced termination of procs. Ensure that procs are removed from the local data list upon termination
This commit was SVN r22223.
2009-11-19 19:43:10 +00:00
Ralph Castain
1a44b84b25 If a process is in certain states (e.g., polling for messages in the event lib), then it can blissfully ignore SIGTERM when we try to order it to die. Unfortunately, the OS thinks the process actually did die, leading us to leave orphaned procs around.
The only sure way to kill the thing is with SIGKILL. After hours spent trying to debug this bizarre situation with a reliable reproducer, I finally tracked it down and fixed it.

Go figure...I sure can't.

This commit was SVN r22220.
2009-11-19 17:25:15 +00:00
Rainer Keller
7dfe709ac1 - Initialize n before usage.
This commit was SVN r22169.
2009-10-29 15:52:53 +00:00
Ralph Castain
13d86e100b Courtesy of Ralph and Jeff:
Continue the reorganization of the configure system. Move files from the main config directory to their appropriate level-specific config directories. Modify the configure system to correctly handle compiler detection, test, and setup so that all things pertaining to opal and orte are done at the lower level, with the ompi configure system only looking at mpi-specific options.

Ensure the wrapper compilers for orte and ompi only get built when appropriate. Add support for c++ to the orte wrapper compilers, both script and non-script versions.

This commit was SVN r22138.
2009-10-24 01:04:35 +00:00
Ralph Castain
2665825693 Correct an error that causes the system to "bounce" when we order a job killed. We didn't used to discriminate between a process being ordered to die, and a process that was aborted by an external signal. Unfortunately, that means the error mgr gets called and told a process abnormally aborted when we order termination, thus causing the errmgr to send out a "kill procs" command again.
Wouldn't be so bad, except...the errmgr orders the termination of ALL procs, which kills any other job that should have been left alone.

Add a new proc and job state indicating "killed_by_cmd" so we can tell the difference between a proc/job that was deliberately terminated by us vs one that is killed by external signal.

This change was tested to ensure it didn't interfere with ctrl-c operation (it doesn't - we order termination of all jobs when we get a ctrl-c).

This commit was SVN r22100.
2009-10-14 22:49:56 +00:00
Ralph Castain
84cc847be8 Next phase of auto-wireup using multicast. Enable use of multicast groups to separate comm from different application groups. Have the orted bootstrap message go to a different rml tag so the node can be added to the pool.
This commit was SVN r22083.
2009-10-10 01:19:56 +00:00
Ralph Castain
c749fefbd0 Instead of an odls-base mca param, make report_bindings a global param so that we can (a) detect it was set in the plm, and then (b) ensure it gets passed along to remote orteds so they will comply with the request.
This commit was SVN r22021.
2009-09-28 03:17:15 +00:00
Ralph Castain
709b36efb4 Cleanup auto-wireup and enable tools to "discover" the HNP via multicast
This commit was SVN r22012.
2009-09-25 01:00:09 +00:00
Ralph Castain
dff0d01673 Yet another paffinity cleanup...sigh.
1. ensure that orte_rmaps_base_schedule_policy does not override cmd line settings

2. when you try to bind to more cores than we have, generate a not-enough-processors error message

3. allow npersocket -bind-to-core combination - because, yes, somebody actually wants to do it.

This commit was SVN r21996.
2009-09-22 18:44:53 +00:00
Ralph Castain
8da3aa8d5c Some (hopefully final!) adjustments and corrections to the paffinity support:
1. default -npersocket to force -bind-to-socket

2. if we cannot get a value for cores/socket, try using #logical cpus. otherwise, default to 1 core

3. add missing error message for not-enough-processors

4. since we no longer loop through orte_register_params twice, put the auto-detect of
   topology info in the rte_init for hnp and std_orted

5. fix bind-to-core, bysocket combination

This commit was SVN r21992.
2009-09-22 15:41:03 +00:00
Ralph Castain
2210989e2d Update the cm ess module to support orted bootstrap. Continue work towards bootstrap capability.
This commit was SVN r21989.
2009-09-22 02:16:40 +00:00
Terry Dontje
0ccf2d87b6 rename do-not-bind to bind-to-none and clean up an error message
This commit was SVN r21980.
2009-09-21 17:00:02 +00:00
Terry Dontje
13be2d2a00 correct mistype in odle should be odls call to orte_show_help
This commit was SVN r21979.
2009-09-21 13:22:37 +00:00
Ralph Castain
7138fd131f Final cleanup on new paffinity "if-avail" messages, plus fix one bug reported by Terry
This commit was SVN r21978.
2009-09-19 17:43:21 +00:00
Ralph Castain
2028017554 Modify the paffinity system to handle binding directives that are "soft" - i.e., when someone directs that we bind if the system supports it. This allows community members to distribute OMPI with default MCA param files that direct general binding policies, without having the distributed software fail if the system cannot support those policies.
The new options work by adding an ":if-avail" qualifier to the "bind-to-socket" and "bind-to-core" MCA params. If the system does not support this capability, the job will launch anyway. Without the qualifier, the job will abort with an error message indicating that the required functionality is not supported on this system.

This commit was SVN r21975.
2009-09-18 19:48:42 +00:00
Ralph Castain
2688ad2c9f Ensure the odls_types are included when referencing the APIs
This commit was SVN r21958.
2009-09-09 17:47:13 +00:00
Ralph Castain
ef4cdeeb69 Fix round-robin mapping when bind-to-socket in cases where #procs > #sockets and #cores
This commit was SVN r21913.
2009-08-29 03:36:21 +00:00
Ralph Castain
433673c64f Report bindings in all cases, including external bindings and slot lists
This commit was SVN r21911.
2009-08-28 13:58:46 +00:00
Ralph Castain
59f08dd2ff Support the combination of npersocket and bind-to-core
This commit was SVN r21909.
2009-08-28 02:31:26 +00:00
Ralph Castain
01ba0eaa47 Correctly handle npersocket corner cases
This commit was SVN r21901.
2009-08-27 11:25:48 +00:00
Ralph Castain
5e710928a5 Revise the new binding system slightly:
1. finalize the logic for properly respecting externally assigned bindings. Thanks to Chris Samuel for his help with this. Still needs some acid testing, but appears to now work.

2. remove the double-logic of requiring opal_paffinity_alone AND bind-to-foo. If the user specifies bind-to-foo, trust her and just do it.

This commit was SVN r21885.
2009-08-26 02:01:49 +00:00
Ralph Castain
0bd12e99ff Fix typo - we want to detect bindings, not set them in the mask.
Thanks to Chris Samuel for finding it!

This commit was SVN r21875.
2009-08-25 11:53:05 +00:00
Ralph Castain
e66a0be796 First attempt at making OMPI respect external bindings. Detect any external bindings on the daemons, and use that to determine which sockets/cores to bind to.
I have no machine which allows me to do external binding, so I will have to ask others to test the new logic. However, I did verify that these changes don't break the existing logic when no external bindings were present.

This commit was SVN r21842.
2009-08-19 19:29:15 +00:00
Shiqing Fan
bce2f44154 Update related .windows files with proper compiling properties, in order to have a successful DSO build.
This commit was SVN r21805.
2009-08-12 08:55:58 +00:00
Ralph Castain
1dc12046f1 Modify the OMPI paffinity and mapping system to support socket-level mapping and binding. Mostly refactors existing code, with modifications to the odls_default module to support the new capabilities.
Adds several new mpirun options:

* -bysocket - assign ranks on a node by socket. Effectively load balances the procs assigned to a node across the available sockets. Note that ranks can still be bound to a specific core within the socket, or to the entire socket - the mapping is independent of the binding.

* -bind-to-socket - bind each rank to all the cores on the socket to which they are assigned.

* -bind-to-core - currently the default behavior (maintained from prior default)

* -npersocket N - launch N procs for every socket on a node. Note that this implies we know how many sockets are on a node. Mpirun will determine its local values. These can be overridden by provided values, either via MCA param or in a hostfile

Similar features/options are provided at the board level for multi-board nodes.

Documentation to follow...

This commit was SVN r21791.
2009-08-11 02:51:27 +00:00
Rainer Keller
76469ea64a - Change the property of a few files, that obviously
don't need to be svn:executable...

This commit was SVN r21786.
2009-08-11 01:40:00 +00:00
George Bosilca
3e971e61f3 The system headers are supposed to be protected by #ifdef and not by #if.
This commit was SVN r21700.
2009-07-16 18:27:33 +00:00
Ralph Castain
7161b37c76 Ensure that the stdin channel is closed when we kill a local proc - all other channels will automatically be closed when the proc terminates
This commit was SVN r21680.
2009-07-15 11:28:19 +00:00
Ralph Castain
b97f885c00 Restore the original API to terminate individual processes instead of the entire job. This was originally removed as we didn't at that time know how to take advantage of it. Some of us are now working on proactive resilience methods that move procs prior to node failure, so this is now a required API. Modify the odls, plm, and orted functions to support this new functionality.
Continue work on the resilient mapper, completing support for fault groups.

This commit was SVN r21639.
2009-07-13 02:29:17 +00:00
Ralph Castain
f832352b45 Clean up some compiler warnings
This commit was SVN r21577.
2009-07-01 16:51:11 +00:00
Ralph Castain
b96a71b62e Enable restart of individual processes upon command via the errmgr callback function. It needs an external application to drive this capability, so normal operations shouldn't be affected.
Does not support MPI applications. More work coming to update daemon accounting on movement of procs across nodes.

This commit was SVN r21545.
2009-06-26 20:54:58 +00:00
Ralph Castain
0ba845fed2 Continue development of regular expression support by implementing it for slurm launches. Works for both initial (cmd line and non-cmd line) and comm_spawn launch.
Additional work required to fully enable static port support when using cmd line regular expression launch system.

This commit was SVN r21502.
2009-06-23 20:25:38 +00:00
Ralph Castain
74bd80afd9 Do not preload binaries or files if the app isn't being executed on this node
This commit was SVN r21444.
2009-06-16 03:12:30 +00:00
Ralph Castain
1ee4acb247 Cleanup how we handle pointer arrays in the odls base fns to avoid potential segfaults
This commit was SVN r21423.
2009-06-12 17:51:23 +00:00
Ralph Castain
f24cefe3d2 Shift the check for adequate file descriptors to after we check if this proc is part of the job to be launched - no point in doing the check more often than absolutely required
This commit was SVN r21406.
2009-06-10 15:18:48 +00:00
Ralph Castain
86d55d7ebf Fix tight loops over comm_spawn by checking to see if the system has enough child procs and file descriptors available before attempting to launch. If not, introduce a 1sec delay and then test again. This provides a chance for the orted to complete processing of proc terminations from other children, hopefully creating room for the new proc(s).
Update the loop_spawn test to remove a sleep so that it runs at max speed, letting the new code catch when we overrun ourselves and wait for room to be cleared for the next comm_spawn.

This commit was SVN r21390.
2009-06-08 18:28:26 +00:00
Rolf vandeVaart
db04b6ca71 This change does two things. First, do not emit error
messages when delivering a signal (like STOP or CONT)
to a non-existant process.  This fixes trac:1929.
Also, only print one error message in the other cases.

This commit was SVN r21263.

The following Trac tickets were found above:
  Ticket 1929 --> https://svn.open-mpi.org/trac/ompi/ticket/1929
2009-05-22 14:59:27 +00:00
Ralph Castain
f139cfd28a Fully enable the use of static ports to minimize connections on mpirun. When static ports are provided, daemons will automatically use routes defined by the selected routed module to callback to mpirun during startup, thus elimating the dedicated daemon-to-mpirun connection. Therefore, the total number of connections on mpirun will equal the fanout of the routed module (instead of #nodes in job).
Add a new tm ess module that exploits this capability.

Update the various plm modules to enable it - just a minor change reflecting an added param to a plm base function.

Additional fixes included:

1. remove an erroneous cleanup of session directories in the tool finalize procedure - tools don't create session directories to begin with!

2. fix a duplicate free when attempting to execute a non-existent app

3. cleanup an typo in the comm utilities 

4. fix comm_spawn - was perturbed by the changes in pack/unpack of orte_job_t to properly support orte-ps

Been tested on slurm and tm machines, using all tests in orte/test/mpi. May run into issue with command line length on large jobs due to inclusion of node info to support static ports - will fix this next with addition of regexp generator to compress that info.

This commit was SVN r21248.
2009-05-16 04:15:55 +00:00
Ralph Castain
d396f0a6fc Per the discussion on the devel list, move the binding of processes to processors from MPI_Init to process start. This involves:
1. replacing mpi_paffinity_alone with opal_paffinity_alone - for back-compatibility, I have aliased mpi_paffinity_alone to the new param name. This caus
es a mild abstraction break in the opal/mca/paffinity framework - per the devel discussion...live with it. :-) I also moved the ompi_xxx global variable
 that tracked maffinity setup so it could be properly closed in MPI_Finalize to the opal/mca/maffinity framework to avoid an abstraction break.

2. Added code to the odls/default module to perform paffinity binding and maffinity init between process fork and exec. This has been tested on IU's odi
n cluster and works for both MPI and non-MPI apps.

3. Revise MPI_Init to detect if affinity has already been set, and to attempt to set it if not already done. I have *not* tested this as I haven't yet f
igured out a way to do so - I couldn't get slurm to perform cpu bindings, even though it supposedly does do so.

This has only been lightly tested and would definitely benefit from a wider range of evaluation...

This commit was SVN r21209.
2009-05-12 02:18:35 +00:00
Ralph Castain
c45ff0d59f Take the next step towards fully utilizing static ports for the daemons to eliminate the initial "phone home" to mpirun by modifying the orted termination procedure to eliminate the need for a full barrier-like operation. Instead, we add a "onesided" barrier to the grpcomm framework API that releases the orted once it has completed its own contribution to the barrier - i.e., the orteds now exit as the "ack" message rolls up towards mpirun instead of sending the "ack" directly to mpirun.
This causes the orteds in the routing tree to remain alive until all termination "acks" from orteds below them have passed through. Thus, if we use static ports, we no longer require a direct orted-to-mpirun connection.

Also modify the binomial routed module so it conforms to what all the other routed modules do and have all messages pass along the routing tree instead of short-circuiting between orteds. This further reduces the number of ports being opened on backend nodes.

This commit was SVN r21203.
2009-05-11 14:11:44 +00:00
Greg Koenig
60485ff95f This is a very large change to rename several #define values from
OMPI_* to OPAL_*.  This allows opal layer to be used more independent
from the whole of ompi.

NOTE: 9 "svn mv" operations immediately follow this commit.

This commit was SVN r21180.
2009-05-06 20:11:28 +00:00
Shiqing Fan
cd565923d3 Completely remove ltdl support for Windows build.
This commit was SVN r21170.
2009-05-05 18:59:13 +00:00
Ralph Castain
4be24521aa Modify the orte_process_info structure to handle a broader range of process types by replacing the individual booleans with a 32-bit bitmap. Use a set of #define's to define the individual bits, and a set of matching macros to test for them. Update the orte code base to use the macros instead of the booleans.
Minor mod to the ompi layer to use the new #define's - just one-line name replacements.

This commit was SVN r21144.
2009-05-04 11:07:40 +00:00
Rainer Keller
221fb9dbca ... Delayed due to notifier commits earlier this day ...
- Delete unnecessary header files using
   contrib/check_unnecessary_headers.sh after applying
   patches, that include headers, being "lost" due to
   inclusion in one of the now deleted headers...

   In total 817 files are touched.
   In ompi/mpi/c/ header files are moved up into the actual c-file,
   where necessary (these are the only additional #include),
   otherwise it is only deletions of #include (apart from the above
   additions required due to notifier...)

 - To get different MCAs (OpenIB, TM, ALPS), an earlier version was
   successfully compiled (yesterday) on:
   Linux locally using intel-11, gcc-4.3.2 and gcc-SVN + warnings enabled
   Smoky cluster (x86-64 running Linux) using PGI-8.0.2 + warnings enabled
   Lens cluster (x86-64 running Linux) using Pathscale-3.2 + warnings enabled

This commit was SVN r21096.
2009-04-29 01:32:14 +00:00
Rainer Keller
6c1cce8761 - For the upcoming header cleanup commit,
several header files (previously included by header-files)
   now have to be moved "upward".
   This is mainly system headers such as string.h, stdio.h and for
   networking, but also some orte headers.

This commit was SVN r21095.
2009-04-29 00:49:23 +00:00
Shiqing Fan
d8f61695cd Remove a few .ompi_ignore, and add configure scripts, so that the source files of these components will be put into the tarball.
This commit was SVN r21070.
2009-04-24 16:49:01 +00:00
Shiqing Fan
3d4e0472d6 Add windows support files into the tarball, including .windows, CMakeLists.txt files, and CMake modules. Thanks to Jeff for testing it on Linux.
This commit was SVN r21069.
2009-04-24 16:39:33 +00:00
Jeff Squyres
49b60029e6 * Set svn:ignore
* Fix filename in Makefile.am

This commit was SVN r20868.
2009-03-25 13:32:55 +00:00
Rainer Keller
d8cf4c0fec - Get pgcc on XT to complain less:
In case we use memcmp, strlen, strup and friends include <string.h>
   Also several constants.h are not included directly
 - Let's have mca_topo_base_cart_create  return ompi-errors in
   ompi/mca/topo/base/topo_base_cart_create.c

This commit was SVN r20773.
2009-03-13 02:10:32 +00:00