1. replacing mpi_paffinity_alone with opal_paffinity_alone - for back-compatibility, I have aliased mpi_paffinity_alone to the new param name. This caus
es a mild abstraction break in the opal/mca/paffinity framework - per the devel discussion...live with it. :-) I also moved the ompi_xxx global variable
that tracked maffinity setup so it could be properly closed in MPI_Finalize to the opal/mca/maffinity framework to avoid an abstraction break.
2. Added code to the odls/default module to perform paffinity binding and maffinity init between process fork and exec. This has been tested on IU's odi
n cluster and works for both MPI and non-MPI apps.
3. Revise MPI_Init to detect if affinity has already been set, and to attempt to set it if not already done. I have *not* tested this as I haven't yet f
igured out a way to do so - I couldn't get slurm to perform cpu bindings, even though it supposedly does do so.
This has only been lightly tested and would definitely benefit from a wider range of evaluation...
This commit was SVN r21209.
only show up if a notifier component is selected, of course). These
can be disabled by setting the MCA parameter mpi_notify_init_finalize
to 0.
These messages are both intended as "hey, does the community like
this?" and as a way to get some real-world testing of the notify
system. The default is currently to send these messages if a notify
component is selected; we can change the default later if desired.
This commit was SVN r21078.
get bitten by header depending on having already included
the corresponding [opal|orte|ompi]_config.h header.
When separating, things like [OPAL|ORTE|OMPI]_DECLSPEC
are missed.
Script to add the corresponding header in front of all following
(taking care of possible #ifdef HAVE_...)
- Including some minor cleanups to
- ompi/group/group.h -- include _after_ #ifndef OMPI_GROUP_H
- ompi/mca/btl/btl.h -- nclude _after_ #ifndef MCA_BTL_H
- ompi/mca/crcp/bkmrk/crcp_bkmrk_btl.c -- still no need for
orte/util/output.h
- ompi/mca/pml/dr/pml_dr_recvreq.c -- no need for mpool.h
- ompi/mca/btl/btl.h -- reorder to fit
- ompi/mca/bml/bml.h -- reorder to fit
- ompi/runtime/ompi_mpi_finalize.c -- reorder to fit
- ompi/request/request.h -- additionally need ompi/constants.h
- Tested on linux/x86-64
This commit was SVN r20720.
figure it out at runtime (really meaning: we'll still default to "0"
unless something explicitly overrides to 1, such as the openib BTL).
This way, ompi_info doesn't confusingly report mpi_leave_pinned==0 for
mpi_leave_pinned, but we end up running with mpi_leave_pinned==1.
Fixes trac:1502.
This commit was SVN r19571.
The following Trac tickets were found above:
Ticket 1502 --> https://svn.open-mpi.org/trac/ompi/ticket/1502
Short version: remove opal_paffinity_alone and restore
mpi_paffinity_alone. ORTE makes various information available for the
MPI layer to decide what it wants to do in terms of processor
affinity.
Details:
* remove opal_paffinity_alone MCA param; restore mpi_paffinity_alone
MCA param
* move opal_paffinity_slot_list param registration to paffinity base
* ompi_mpi_init() calls opal_paffinity_base_slot_list_set(); if that
succeeds use that. If no slot list was set, see if
mpi_paffinity_alone was set. If so, bind this process to its Node
Local Rank (NLR). The NLR is the ORTE-maintained slot ID; if you
COMM_SPAWN to a host in this ORTE universe that already has procs
on it, the NLR for the new job will start at N (not 0). So this is
slightly better than mpi_paffinity_alone in the v1.2 series.
* If a slot list is specified *and* mpi_paffinity_alone is set, we
display an error and abort.
* Remove calls from rmaps/rank_file component to register and lookup
opal_paffinity mca params.
* Remove code in orte/odls that set affinities - instead, have them
just pass a slot_list if it exists.
* Cleanup the orte/odls code that determined
oversubscribed/want_processor as these were just opposites of each
other.
This commit was SVN r18874.
The following Trac tickets were found above:
Ticket 1383 --> https://svn.open-mpi.org/trac/ompi/ticket/1383
Update the rsh tree spawn capability so we spawn the next wave of daemons before launching our own local procs.
Add an ability to encode nodenames for large clusters with contiguous node name numbering schemes - this allows communication of all node names in a few bytes instead of tens-of-bytes/node.
This commit was SVN r18338.
1. applied prefix rule to functions and variables of RMAPS rank_file component
2. cleaned ompi_mpi_init.c from paffinity code
3. paffinity code moved to new opal/mca/paffinity/base/paffinity_base_service.c file
4. added opal_paffinity_slot_list mca parameter
This commit was SVN r18019.
The commit has been tested for C/R and Cray operations, and on Odin (SLURM, rsh) and RoadRunner (TM). I tried to update all environments, but obviously could not test them. I know that Windows needs some work, and have highlighted what is know to be needed in the odls process component.
This represents a lot of work by Brian, Tim P, Josh, and myself, with much advice from Jeff and others. For posterity, I have appended a copy of the email describing the work that was done:
As we have repeatedly noted, the modex operation in MPI_Init is the single greatest consumer of time during startup. To-date, we have executed that operation as an ORTE stage gate that held the process until a startup message containing all required modex (and OOB contact info - see #3 below) info could be sent to it. Each process would send its data to the HNP's registry, which assembled and sent the message when all processes had reported in.
In addition, ORTE had taken responsibility for monitoring process status as it progressed through a series of "stage gates". The process reported its status at each gate, and ORTE would then send a "release" message once all procs had reported in.
The incoming changes revamp these procedures in three ways:
1. eliminating the ORTE stage gate system and cleanly delineating responsibility between the OMPI and ORTE layers for MPI init/finalize. The modex stage gate (STG1) has been replaced by a collective operation in the modex itself that performs an allgather on the required modex info. The allgather is implemented using the orte_grpcomm framework since the BTL's are not active at that point. At the moment, the grpcomm framework only has a "basic" component analogous to OMPI's "basic" coll framework - I would recommend that the MPI team create additional, more advanced components to improve performance of this step.
The other stage gates have been replaced by orte_grpcomm barrier functions. We tried to use MPI barriers instead (since the BTL's are active at that point), but - as we discussed on the telecon - these are not currently true barriers so the job would hang when we fell through while messages were still in process. Note that the grpcomm barrier doesn't actually resolve that problem, but Brian has pointed out that we are unlikely to ever see it violated. Again, you might want to spend a little time on an advanced barrier algorithm as the one in "basic" is very simplistic.
Summarizing this change: ORTE no longer tracks process state nor has direct responsibility for synchronizing jobs. This is now done via collective operations within the MPI layer, albeit using ORTE collective communication services. I -strongly- urge the MPI team to implement advanced collective algorithms to improve the performance of this critical procedure.
2. reducing the volume of data exchanged during modex. Data in the modex consisted of the process name, the name of the node where that process is located (expressed as a string), plus a string representation of all contact info. The nodename was required in order for the modex to determine if the process was local or not - in addition, some people like to have it to print pretty error messages when a connection failed.
The size of this data has been reduced in three ways:
(a) reducing the size of the process name itself. The process name consisted of two 32-bit fields for the jobid and vpid. This is far larger than any current system, or system likely to exist in the near future, can support. Accordingly, the default size of these fields has been reduced to 16-bits, which means you can have 32k procs in each of 32k jobs. Since the daemons must have a vpid, and we require one daemon/node, this also restricts the default configuration to 32k nodes.
To support any future "mega-clusters", a configuration option --enable-jumbo-apps has been added. This option increases the jobid and vpid field sizes to 32-bits. Someday, if necessary, someone can add yet another option to increase them to 64-bits, I suppose.
(b) replacing the string nodename with an integer nodeid. Since we have one daemon/node, the nodeid corresponds to the local daemon's vpid. This replaces an often lengthy string with only 2 (or at most 4) bytes, a substantial reduction.
(c) when the mca param requesting that nodenames be sent to support pretty error messages, a second mca param is now used to request FQDN - otherwise, the domain name is stripped (by default) from the message to save space. If someone wants to combine those into a single param somehow (perhaps with an argument?), they are welcome to do so - I didn't want to alter what people are already using.
While these may seem like small savings, they actually amount to a significant impact when aggregated across the entire modex operation. Since every proc must receive the modex data regardless of the collective used to send it, just reducing the size of the process name removes nearly 400MBytes of communication from a 32k proc job (admittedly, much of this comm may occur in parallel). So it does add up pretty quickly.
3. routing RML messages to reduce connections. The default messaging system remains point-to-point - i.e., each proc opens a socket to every proc it communicates with and sends its messages directly. A new option uses the orteds as routers - i.e., each proc only opens a single socket to its local orted. All messages are sent from the proc to the orted, which forwards the message to the orted on the node where the intended recipient proc is located - that orted then forwards the message to its local proc (the recipient). This greatly reduces the connection storm we have encountered during startup.
It also has the benefit of removing the sharing of every proc's OOB contact with every other proc. The orted routing tables are populated during launch since every orted gets a map of where every proc is being placed. Each proc, therefore, only needs to know the contact info for its local daemon, which is passed in via the environment when the proc is fork/exec'd by the daemon. This alone removes ~50 bytes/process of communication that was in the current STG1 startup message - so for our 32k proc job, this saves us roughly 32k*50 = 1.6MBytes sent to 32k procs = 51GBytes of messaging.
Note that you can use the new routing method by specifying -mca routed tree - if you so desire. This mode will become the default at some point in the future.
There are a few minor additional changes in the commit that I'll just note in passing:
* propagation of command line mca params to the orteds - fixes ticket #1073. See note there for details.
* requiring of "finalize" prior to "exit" for MPI procs - fixes ticket #1144. See note there for details.
* cleanup of some stale header files
This commit was SVN r16364.
mpi_show_mpi_alloc_mem_leaks
When activated, MPI_FINALIZE displays a list of memory allocations
from MPI_ALLOC_MEM that were not freed by MPI_FREE_MEM (in each MPI
process).
* If set to a positive integer, display only that many leaks.
* If set to a negative integer, display all leaks.
* If set to 0, do not show any leaks.
This commit was SVN r15736.
* Don't need the 2 process case -- we'll send an extra message, but
at very little cost and less code is better.
* Use COMPLETE sends instead of STANDARD sends so that the connection
is fully established before we move on to the next connection. The
previous code was still causing minor connection flooding for huge
numbers of processes.
* mpi_preconnect_all now connects both OOB and MPI layers. There's
also mpi_preconnect_mpi and mpi_preconnect_oob should you want to
be more specific.
* Since we're only using the MCA parameters once at the beginning
of time, no need for global constants. Just do the quick param
lookup right before the parameter is needed. Save some of that
global variable space for the next guy.
Fixes trac:963
This commit was SVN r14553.
The following Trac tickets were found above:
Ticket 963 --> https://svn.open-mpi.org/trac/ompi/ticket/963
needlessly registered in multiple different places, and none of them
had a good help string. There was also an inconsistent check for
setting both mpi_leave_pinned and mpi_leave_pinned_pipeline (i.e., it
was only in ob1). This commit moves the registration of these params
to one central place (ompi/runtime/ompi_mpi_params.c, with all other
mpi_* MCA params) and uses globals to propagate the values as
relevant. The error check was also moved to the central location to
ensure that we can consistency everywhere.
This commit was SVN r13226.
r10877:
add warm up connection option.. of course this only warms up the first
eager btl but this should be adequate for now..
r10881:
Consulted with Galen and did a few things:
- Fix the algorithm to actually make the connections that we want
- Rename the MCA param to mpi_preconnect_all
- Cleanup the code a bit:
- move the logic to a separate .c file
- check return codes properly
This commit was SVN r11114.
The following SVN revisions from the original message are invalid or
inconsistent and therefore were not cross-referenced:
r10877
r10877
r10881
r10881
(which is currently the default, although we may argue over this later
:-) ), a new field in the ompi_proc_t named proc_hostname will have
the string hostname of that peer. If 0, this field will be NULL.
This allows for printing nicer error messages in environments where
peer hostnames are not otherwise easily obtainable, such as the mvapi
BTL (requested by Sandia, who has both a *huge* number of nodes and
6GB of RAM per node, so they don't care about the extra memory usage
;-) ).
This commit was SVN r9902.
MPI_ABORT. From the ompi_info output:
MCA mpi: parameter "mpi_abort_delay" (current value: "0")
If nonzero, print out an identifying message when
MPI_ABORT is invoked (hostname, PID of the process
that called MPI_ABORT) and delay for that many seconds
before exiting (a negative delay value means to never
abort). This allows attaching of a debugger before
quitting the job.
MCA mpi: parameter "mpi_abort_print_stack" (current value: "0")
If nonzero, print out a stack trace when MPI_ABORT is
invoked
This commit was SVN r9487.
that this ORTE job is the only one on the nodes involved, and if
told what processors to assign the processes to, will bind MPI
processes to specific processors.
- Convert #include's to new style
- Convert some <tab>'s to spaces
This commit was SVN r6904.
