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Граф коммитов

6733 Коммитов

Автор SHA1 Сообщение Дата
Gaëtan Bossu
ccc96efc2e DDN's Infinite Memory Engine support for OMPIO
Changes made:
 - Create a new fs component for IME
 - Create a new fbtl component for IME
 - Modify the close function of OMPIO to finalize IME if necessary

Signed-off-by: Gaëtan Bossu <gbossu@ddn.com>
Signed-off-by: Sylvain Didelot <sdidelot@ddn.com>
2018-08-16 11:45:47 +02:00
Todd Kordenbrock
e9f378e851
Merge pull request #5500 from tkordenbrock/topic/master/fix.PtlMEUnlink.in.use
coll-portals4: retry PtlMEUnlink() if PTL_IN_USE
2018-08-07 11:21:00 -05:00
Nathan Hjelm
c294bbc352
Merge pull request #5508 from hjelmn/fuzzy_match
Bring fuzzy matching support into master
2018-08-06 13:52:04 -06:00
Nathan Hjelm
eeae3f9b93
Merge pull request #5517 from bosilca/topic/treematch_warnings
Remove few warnings identified by @rhc in #5514.
2018-08-06 13:25:07 -06:00
Matthew Dosanjh
c8d13486cc Fixed promotion bug
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-08-06 12:56:36 -06:00
Boris Karasev
57683366ca pmix: added check for pmix fence status
Signed-off-by: Boris Karasev <karasev.b@gmail.com>
2018-08-06 15:01:57 +06:00
George Bosilca
6d11a45f44
Remove few warnings identified by @rhc in #5514.
Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
2018-08-03 16:21:06 -04:00
Nathan Hjelm
dd74c6252f pml/ob1: custom matching cleanup and configury
This commit updates the new custom matching code in pml/ob1 so it can
not be enabled with a configure option. This commit also renames the
fuzzy-matching headers to avoid potential name conflicts and removes
the use of C reserved identifiers.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-08-02 13:06:19 -06:00
Matthew Dosanjh
572694b621 Adding custom match source.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-08-02 12:23:08 -06:00
Ralph Castain
1aef0a64aa
Merge pull request #5477 from nrspruit/ns_mtl_send_isend
MTL OFI: send/isend split into blocking/non-blocking paths
2018-07-31 13:08:37 -07:00
Ralph Castain
8744320a18
Merge pull request #5476 from nrspruit/ns_cancel_fix
MTL OFI: Fix Deadlock in fi_cancel given completion during cancel
2018-07-31 13:07:41 -07:00
Todd Kordenbrock
f3f2a826b4 coll-portals4: retry PtlMEUnlink() if PTL_IN_USE
In the cleanup phase, it is possible for PtlMEUnlink() to return
PTL_IN_USE if the NIC is not done with the ME.  This should not
be considered an error.  This commit adds a retry loop around
PtlMEUnlink().

In some cases, the return value of PtlMEUnlink() and PtlCTFree()
was not checked at all.  Check them with the same retry loop as
above.

Signed-off-by: Todd Kordenbrock <thkgcode@gmail.com>
2018-07-31 10:20:55 -05:00
Sergey Oblomov
d204b8a678 PML/SPML/UCX/COMPONENT: applied C99 initialization
Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2018-07-28 09:44:03 +03:00
Sergey Oblomov
2806504290 PML/SPML/UCX: init global objects using C99 style
- to avoid value mix used C99 style of object initializations

Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2018-07-25 14:52:45 +03:00
Spruit, Neil R
7dc8c8ba3f MTL OFI: send/isend split into blocking/non-blocking paths
-Updated blocking send to directly call functionality and
set completion events expected to 0 initally. This allows for optimization for
providers that support fi_tinject up to larger sizes. This also reduces
latency on running the OFI mtl with smaller sizes without requiring
calls to progress given fi_tinject is required to complete the messaging
before returning and will not create any events in the Completion Queue.

-Updated non-blocking send to directly call fi_tsend and avoid calling
fi_tinject as the functionality should not wait on completions. This
resolves a bug where applications calling MPI_Isend can overrun the
TX buffer with small (inject) messages causing a deadlock. In addition
this improves performance in message rates by preventing
waiting on any size message to complete in non-blocking send messages.

-Created common ompi_mtl_ofi_ssend_recv function to post the ssend recv
which is common between isend and send code paths.

Signed-off-by: Spruit, Neil R <neil.r.spruit@intel.com>
2018-07-24 07:54:24 -07:00
Spruit, Neil R
767135c580 MTL OFI: Fix Deadlock in fi_cancel given completion during cancel
- If a message for a recv that is being cancelled gets completed after
the call to fi_cancel, then the OFI mtl will enter a deadlock state
waiting for ofi_req->super.ompi_req->req_status._cancelled which will
never happen since the recv was successfully finished.

- To resolve this issue, the OFI mtl now checks ofi_req->req_started
to see if the request has been started within the loop waiting for the
event to be cancelled. If the request is being completed, then the loop
is broken and fi_cancel exits setting
ofi_req->super.ompi_req->req_status._cancelled = false;

Signed-off-by: Spruit, Neil R <neil.r.spruit@intel.com>
2018-07-24 03:12:44 -07:00
Matias Cabral
d996f529c0 MTL OFI: Add support for mem_tag_format
OFI providers may reserve some of the upper bits of the tag for
internal usage and expose it using mem_tag_format. Check for that
and adjust communicator bits as needed.

Signed-off-by: Aravind Gopalakrishnan <Aravind.Gopalakrishnan@intel.com>
2018-07-23 11:39:40 -07:00
Matias Cabral
30fb635836
Merge pull request #5446 from nrspruit/ns_mtl_ofi_overflow
MTL OFI: MTL_OFI_RETRY_UNTIL_DONE support for Resource overflow
2018-07-20 14:53:53 -07:00
Sergey Oblomov
6fe0a73861 PML/UCX: fixed ucp request free on persistent request completion
- in sine cases persistent request was deleted during completion
  callback, this cause double free of linked UCX request (assert
  in debug build or hang in release build)
- UCX request is freed prior completion calback

Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2018-07-20 19:32:20 +03:00
Yossi Itigin
bdb6ece3dd
Merge pull request #5452 from hoopoepg/topic/osc-ucx-fox-hang
OSC/UCX: fixed hang on OSC init
2018-07-19 13:57:51 +03:00
Sergey Oblomov
fa33e322e7 OSC/UCX: code deduplication
Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2018-07-19 12:39:15 +03:00
Sergey Oblomov
6f0a7a2005 OSC/UCX: opal progress register/unregister optimization
Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2018-07-19 12:07:26 +03:00
Yossi Itigin
29812494f2
Merge pull request #5402 from hoopoepg/topic/common-del-procs
MCA/COMMON/UCX: del_procs calls are unified to common module
2018-07-19 11:19:45 +03:00
Sergey Oblomov
55b934bacf OSC/UCX: enable progress when at least one window is allocated
Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2018-07-18 17:52:30 +03:00
Sergey Oblomov
a081fba046 OSC/UCX: fixed hang on OSC init
- there worked progress was missed on startup which caused hang
  on one of ranks

Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2018-07-18 17:01:53 +03:00
Edgar Gabriel
b6b9552ca9
Merge pull request #5444 from gbossu/fix-file-delete
io/ompio: Call component-specific file_delete function instead of POSIX unlink
2018-07-18 08:45:57 -05:00
Sergey Oblomov
920cc2e0d9 MCA/COMMON/UCX: del_procs calls are unified to common module
Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2018-07-18 07:37:25 +03:00
Joshua Ladd
3add13c72e
Merge pull request #5441 from hoopoepg/topic/ucx-memhooks-to-common-module
MCA/COMMON/UCX: shift opal memhooks into common UCX
2018-07-17 15:52:44 -04:00
Matias Cabral
be3cb01cb4
Merge pull request #5397 from nrspruit/ns_ofi_mtl_ssend
MTL OFI: Redesign sync send with reduced tag bits and quick ack
2018-07-17 10:14:33 -07:00
Gaëtan Bossu
8522ba112c MCA/IO/OMPIO: fix MPI_File_delete implementation.
OMPIO now uses the correct delete function depending on the fs

mca_common_ompio_file_delete now works this way instead
of calling POSIX unlink:
 - create a minimal file handle with the given file name
 - select the best fs component using this file handle
 - call the component-specific file delete function

Signed-off-by: Gaëtan Bossu <gbossu@ddn.com>
2018-07-17 18:17:13 +02:00
Gaëtan Bossu
ac6f75e3d1 MCA/FS: check communicator validity in query functions
It is needed because the fs components might be queried due to a MPI_File_delete call.
And in this case, we don't have a communicator value.

Signed-off-by: Gaëtan Bossu <gbossu@ddn.com>
2018-07-17 18:16:21 +02:00
Josh Hursey
9aa5168795
Merge pull request #5353 from ggouaillardet/topic/romio321_grequests
io/romio321: make grequest extensions internal
2018-07-17 10:53:53 -05:00
Gilles Gouaillardet
1a41482720 coll/libnbc: do not recursively call opal_progress()
instead of invoking ompi_request_test_all(), that will end up
calling opal_progress() recursively, manually check the status
of the requests.

the same method is used in ompi_comm_request_progress()

Refs open-mpi/ompi#3901

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-07-17 09:45:08 -06:00
Sergey Oblomov
1c7ae22dfb MCA/COMMON/UCX: shift opal memhooks into common UCX
Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2018-07-17 13:46:38 +03:00
Spruit, Neil R
d4f408a7f8 MTL OFI: MTL_OFI_RETRY_UNTIL_DONE support for Resource overflow
- Added support in MTL_OFI_RETRY_UNTIL_DONE to handle -FI_EAGAIN
  from the provider and correctly attempt to progress the OFI Completion
  queue by calling ompi_mtl_ofi_progress.

- If events were pending that blocked OFI operations from being enqueued
  they will be completed and the OFI operation will be retried once
  ompi_mtl_ofi_progress has successfully completed.

- Updated MTL_OFI_RETRY_UNTIL_DONE to take a RETURN variable instead of
  requiring the existance of a "ret" variable to pass back the return
  value from completing the OFI operation.

Signed-off-by: Spruit, Neil R <neil.r.spruit@intel.com>
2018-07-17 03:00:38 -07:00
Mikhail Kurnosov
ba83cc91eb coll/base: add MPI_Bcast based on a binomial tree scatter followed by a ring allgather
Implements MPI_Bcast using a binomial tree scatter followed by a ring allgather.

Signed-off-by: Mikhail Kurnosov <mkurnosov@gmail.com>
2018-07-16 08:56:09 -06:00
Joshua Ladd
b12868239c
Merge pull request #4765 from xinzhao3/topic/osc-ucx-mem-hook
OMPI/OSC/UCX: move memory hooks init in osc to win creation.
2018-07-13 09:36:20 -04:00
Xin Zhao
74ef51af1b OMPI/OSC/UCX: move memory hooks init in osc to win creation.
Move memory hooks init (for request based operation) in osc ucx to window
creation time, to avoid performance issue in MPI initialization.

Signed-off-by: Xin Zhao <xinz@mellanox.com>
2018-07-12 15:03:02 -07:00
Nathan Hjelm
304a6a52d4 osc/rdma: use local base for local process when possible
This commit fixes a crash that occurs when using btl/vader as an RDMA
btl. This btl supports using CPU atomics and does not support using
the btl for self communication so we must use the local memory
optimizations in osc/rdma.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-07-12 15:50:50 -06:00
KAWASHIMA Takahiro
c87a3df0c9
Merge pull request #5416 from kawashima-fj/pr/coll-libnbc-suppress-warnings
coll/libnbc: Suppress compiler warnings
2018-07-12 15:45:59 +09:00
KAWASHIMA Takahiro
37a05e74aa coll/libnbc: Suppress compiler warnings
Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
2018-07-12 14:42:39 +09:00
KAWASHIMA Takahiro
0021616984 pml/ob1: Fix data corruption of MPI_BSEND
Data transferred by `MPI_BSEND` may corrupt if all of the following
conditions are met.

- The message size is less than the eager limit.
- The `btl_alloc` function in the BTL interface returns `NULL`
  for some reason.
- The MPI program overwrites the send buffer after `MPI_BSEND`
  returns.

The problem is in the way of pending a send request in ob1 PML.
The `mca_pml_ob1_send_request_start_copy` function retruns
`OMPI_ERR_OUT_OF_RESOURCE` if `mca_bml_base_alloc` function returns
`des = NULL`. In this case, the send request is added to the
`send_pending` list and `MPI_BSEND` returns immediately. Next time
the `mca_pml_ob1_send_request_start_copy` function tries sending,
the user buffer may have been overwritten by the MPI program.

Call hierarchy of `MPI_BSEND`:

```
  MPI_Bsend
    mca_pml_ob1_send
      if (MCA_PML_BASE_SEND_BUFFERED == sendmode)
        mca_pml_ob1_isend
          MCA_PML_OB1_SEND_REQUEST_START_W_SEQ
            mca_pml_ob1_send_request_start_seq
              mca_pml_ob1_send_request_start_btl
                if (size <= eager_limit)
                  if (req_send_mode == MCA_PML_BASE_SEND_BUFFERED)
                    mca_pml_ob1_send_request_start_copy
                      mca_bml_base_alloc
                        btl_alloc
              if (OMPI_ERR_OUT_OF_RESOURCE == rc)
                add_request_to_send_pending
        ompi_request_free
```

To solve this problem, we should save the data to the buffer
attached by `MPI_BUFFER_ATTACH` before leaving `MPI_BSEND`.

This problem was introduced by ob1 optimization (commits 2b57f422
and a06e491c) in v1.8 series.

Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
2018-07-12 14:30:58 +09:00
Howard Pritchard
34bc77747c
Merge pull request #5388 from mkurnosov/base-gather-bmtree-fix-mpi-in-place
coll/base/gather_intra_binomial: fix MPI_IN_PLACE processing
2018-07-11 18:34:35 -05:00
Nathan Hjelm
35a75a6bf5 osc/sm: avoid filename collision when multiple windows share same CID
This commit fixes an issue identified by MTT where we can have two
different sets of processes on the same node creating a shared memory
window with communicators sharing the same CID. To avoid this issue
the temporary filename now includes the creating processes vpid.

References #5363

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-07-11 14:32:27 -06:00
Nathan Hjelm
037656bc1d osc/rdma: fix bug introduced in b90c838
This commit fixes an bug that was introduced back in 2016 which
impacts request-based RMA in some cases.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-07-10 18:17:55 -06:00
Gilles Gouaillardet
76292951e5 coll/libnbc: fix integer overflow
Use internal pack/unpack subroutines that operate on MPI_Aint instead of int
and hence solve some integer overflows.

Thanks Clyde Stanfield for reporting this issue.

Refs open-mpi/ompi#5383

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-07-09 10:08:33 -06:00
Mikhail Kurnosov
22fa5a8a67 coll/base/scatter: replaces right skewed binomial tree (in order) with left skewed binomial tree
Current implementation of `coll/base/MPI_Scatter` is based on in-order binomial tree. This tree is right skewed and it provides good performance for a MPI_Gather operation. But for a MPI_Scatter operation left skewed binomial tree is effective.

Signed-off-by: Mikhail Kurnosov <mkurnosov@gmail.com>
2018-07-09 10:04:41 -06:00
Spruit, Neil R
9a17864278 MTL OFI: Redesign sync send with reduced tag bits and quick ack
-Updated the design for sync send MPI calls to use 2 protocol bits for
denoting "sync_send" or "sync_send_ack".

-"Sync_send" is added to the send tag only and is masked out in receives
such that it can be read by the original Recv posted in the send/recv
operation.

-"Sync_send_ack" is sent from the recv callback to the send side. This 0
byte send does not generate a completion entry and instead sends the
message and immediately completes the opal completion in the recv.

-Tag formats ofi_tag_1 and ofi_tag_2 have been updated to include 2
more tag bits per format type due to the reduced protocal bits required
by OMPI.

Signed-off-by: Spruit, Neil R <neil.r.spruit@intel.com>
2018-07-09 06:50:21 -07:00
Yossi Itigin
e77e31b50b
Merge pull request #5378 from hoopoepg/topic/unify-ucx-logging
MCA/COMMON/UCX: unified logging across all UCX modules
2018-07-08 12:45:26 +03:00
Mikhail Kurnosov
b9e14cd7d0 coll/base/gather_intra_binomial: fix MPI_IN_PLACE processing
The call of MPI_Gather with sendbuf and sendtype parameters equal to MPI_IN_PLACE and NULL correspondingly, produces the segmentation fault in the root process.

The problem is that sendtype is used even when sendbuf value is MPI_IN_PLACE. But according to the standard (page 150, line 37), sendtype and sendcount parameters should be ignored in this case.

Signed-off-by: Mikhail Kurnosov <mkurnosov@gmail.com>
2018-07-07 20:59:39 +07:00