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Jeff Squyres
c879170c9e Actually, invoke the error on MPI_COMM_WORLD if you have an invalid
communicator.  :-)

This commit was SVN r21942.
2009-09-04 07:40:28 +00:00
Jeff Squyres
a211c55cce Fix some attribute error detection problems reported by Lisandro
Dalcin. 

This commit was SVN r21941.
2009-09-04 05:18:49 +00:00
Rainer Keller
8e1b23779f - Replace combinations of
#if defined (c_plusplus)
          defined (__cplusplus)
   followed by
      extern "C" {
   and the closing counterpart by BEGIN_C_DECLS and END_C_DECLS.

   Notable exceptions are:
    - opal/include/opal_config_bottom.h:
      This is our generated code, that itself defines BEGIN_C_DECL and
      END_C_DECL
    - ompi/mpi/cxx/mpicxx.h:
      Here we do not include opal_config_bottom.h:                                 
    - Belongs to external code:                                                    
      opal/mca/backtrace/darwin/MoreBacktrace/MoreDebugging/MoreBacktrace.c        
      opal/mca/backtrace/darwin/MoreBacktrace/MoreDebugging/MoreBacktrace.h        
    - opal/include/opal/prefetch.h:
      Has C++ specific macros that are protected:                                  

    - Had #if ... } #endif  _and_ END_C_DECLS (aka end up with 2x
      END_C_DECLS)
      ompi/mca/btl/openib/btl_openib.h
    - opal/event/event.h has #ifdef __cplusplus as BEGIN_C_DECLS...
    - opal/win32/ompi_process.h: had extern "C"\n {...
      opal/win32/ompi_process.h: dito
    - ompi/mca/btl/pcie/btl_pcie_lex.l: needed to add *_C_DECLS
      ompi/mpi/f90/test/align_c.c: dito
    - ompi/debuggers/msgq_interface.h: used #ifdef __cplusplus
    - ompi/mpi/f90/xml/common-C.xsl: Amend

   Tested on linux using --with-openib and --with-mx

   The following do not contain either opal_config.h, orte_config.h or
   ompi_config.h
   (but possibly other header files, that include one of the above):
      ompi/mca/bml/r2/bml_r2_ft.h
      ompi/mca/btl/gm/btl_gm_endpoint.h
      ompi/mca/btl/gm/btl_gm_proc.h
      ompi/mca/btl/mx/btl_mx_endpoint.h
      ompi/mca/btl/ofud/btl_ofud_endpoint.h
      ompi/mca/btl/ofud/btl_ofud_frag.h
      ompi/mca/btl/ofud/btl_ofud_proc.h
      ompi/mca/btl/openib/btl_openib_mca.h
      ompi/mca/btl/portals/btl_portals_endpoint.h
      ompi/mca/btl/portals/btl_portals_frag.h
      ompi/mca/btl/sctp/btl_sctp_endpoint.h
      ompi/mca/btl/sctp/btl_sctp_proc.h
      ompi/mca/btl/tcp/btl_tcp_endpoint.h
      ompi/mca/btl/tcp/btl_tcp_ft.h
      ompi/mca/btl/tcp/btl_tcp_proc.h
      ompi/mca/btl/template/btl_template_endpoint.h
      ompi/mca/btl/template/btl_template_proc.h
      ompi/mca/btl/udapl/btl_udapl_eager_rdma.h
      ompi/mca/btl/udapl/btl_udapl_endpoint.h
      ompi/mca/btl/udapl/btl_udapl_mca.h
      ompi/mca/btl/udapl/btl_udapl_proc.h
      ompi/mca/mtl/mx/mtl_mx_endpoint.h
      ompi/mca/mtl/mx/mtl_mx.h
      ompi/mca/mtl/psm/mtl_psm_endpoint.h
      ompi/mca/mtl/psm/mtl_psm.h
      ompi/mca/pml/cm/pml_cm_component.h
      ompi/mca/pml/csum/pml_csum_comm.h
      ompi/mca/pml/dr/pml_dr_comm.h
      ompi/mca/pml/dr/pml_dr_component.h
      ompi/mca/pml/dr/pml_dr_endpoint.h
      ompi/mca/pml/dr/pml_dr_recvfrag.h
      ompi/mca/pml/example/pml_example.h
      ompi/mca/pml/ob1/pml_ob1_comm.h
      ompi/mca/pml/ob1/pml_ob1_component.h
      ompi/mca/pml/ob1/pml_ob1_endpoint.h
      ompi/mca/pml/ob1/pml_ob1_rdmafrag.h
      ompi/mca/pml/ob1/pml_ob1_recvfrag.h
      ompi/mca/pml/v/pml_v_output.h
      opal/include/opal/prefetch.h
      opal/mca/timer/aix/timer_aix.h
      opal/util/qsort.h
      test/support/components.h

This commit was SVN r21855.

The following SVN revision numbers were found above:
  r2 --> open-mpi/ompi@58fdc18855
2009-08-20 11:42:18 +00:00
George Bosilca
4d8afc8fb0 Make testsome similar to waitsome.
This commit was SVN r21846.
2009-08-20 02:57:34 +00:00
Jeff Squyres
11d44cec1b Fix MPI_COMM_SPAWN[_MULTIPLE] to only check the info handles for
errors on the root.  Thanks to Federico Golfre Andreasi for reporting
the problem.

This commit was SVN r21838.
2009-08-19 13:24:12 +00:00
Jeff Squyres
c3afac1d50 Fix comment typo
This commit was SVN r21824.
2009-08-14 12:09:19 +00:00
Jeff Squyres
b8332ea2b2 Patch from Kiril to make the parameter checking on MPI_CART_CREATE a
bit more relaxed.

This commit was SVN r21816.
2009-08-13 22:06:38 +00:00
Rainer Keller
23e6ec1ebf - Update manpages of depracted functions.
Fix headers, move too long subjects into main text.
   Add See also sections.

This commit was SVN r21779.
2009-08-10 13:44:53 +00:00
Jeff Squyres
846e6e4bad Fix borkedness from r21755:
* No need for OPAL_SIZEOF_BOOL and OPAL_SIZEOF_INT in comm_inln.h --
   just use sizeof()
 * Fix logic in ompi_setup_cxx.m4 to account for the case where we
   ''do'' have a C++ compiler (duh!!)
 * Fix spelling error in a shell variable that ended up making a
   bad/empty #define

This should bring the trunk back to being functional.  Sorry for the
interruption, folks...

This commit was SVN r21758.

The following SVN revision numbers were found above:
  r21755 --> open-mpi/ompi@90d6491737
2009-08-04 18:45:11 +00:00
Jeff Squyres
c7376ae053 Start using Libtool's shared library versioning scheme. See lengthy
note in VERSION file.

NOTE: the versions will ''always'' be 0:0:0 on the SVN trunk and
developer branches.  They will only have meaningful values (starting
with 0:0:0 in 1.3.4) on release branches.  Only RM's will modify these
values immediately preceeding a release.

This commit was SVN r21729.
2009-07-23 21:35:17 +00:00
Ralph Castain
dbac602be5 Add support for the add-host and add-hostfile MPI Info keys to allow Comm_spawn users to add new hosts to those already known by mpirun.
Requires full testing once comm_spawn is fixed (Edgar is working that now).

This commit was SVN r21664.
2009-07-14 14:34:11 +00:00
Rainer Keller
6c5532072a - Split the datatype engine into two parts: an MPI specific part in
OMPI
   and a language agnostic part in OPAL. The convertor is completely
   moved into OPAL.  This offers several benefits as described in RFC
   http://www.open-mpi.org/community/lists/devel/2009/07/6387.php
   namely:
    - Fewer basic types (int* and float* types, boolean and wchar
    - Fixing naming scheme to ompi-nomenclature.
    - Usability outside of the ompi-layer.
 - Due to the fixed nature of simple opal types, their information is
   completely
   known at compile time and therefore constified
 - With fewer datatypes (22), the actual sizes of bit-field types may be
   reduced
   from 64 to 32 bits, allowing reorganizing the opal_datatype
   structure, eliminating holes and keeping data required in convertor
   (upon send/recv) in one cacheline...
   This has implications to the convertor-datastructure and other parts
   of the code.
 - Several performance tests have been run, the netpipe latency does not
   change with
   this patch on Linux/x86-64 on the smoky cluster.
 - Extensive tests have been done to verify correctness (no new
   regressions) using:
   1. mpi_test_suite on linux/x86-64 using clean ompi-trunk and
    ompi-ddt:
    a. running both trunk and ompi-ddt resulted in no differences
       (except for MPI_SHORT_INT and MPI_TYPE_MIX_LB_UB do now run
       correctly).
    b. with --enable-memchecker and running under valgrind (one buglet
       when run with static found in test-suite, commited)
   2. ibm testsuite on linux/x86-64 using clean ompi-trunk and ompi-ddt:
      all passed (except for the dynamic/ tests failed!! as trunk/MTT)
   3. compilation and usage of HDF5 tests on Jaguar using PGI and
      PathScale compilers.
   4. compilation and usage on Scicortex.
 - Please note, that for the heterogeneous case, (-m32 compiled
   binaries/ompi), neither
   ompi-trunk, nor ompi-ddt branch would successfully launch.

This commit was SVN r21641.
2009-07-13 04:56:31 +00:00
Jeff Squyres
b363fc2a6b Per the discussion yesterday, remove all use of MPI_Flogical -- it's
not an official MPI type, so it shouldn't be named that way.  Instead,
use ompi_fortran_logical_t.

This commit was SVN r21353.
2009-06-02 12:04:17 +00:00
Rainer Keller
b572dc3591 - As discussed revert r21330, Fortran-configure info should
not end up in OPAL
 - Will post an updated patch for the OMPI_ALIGNMENT_ parts (within C).

This commit was SVN r21342.

The following SVN revision numbers were found above:
  r21330 --> open-mpi/ompi@95596d1814
2009-06-01 19:02:34 +00:00
Rainer Keller
95596d1814 - Move alignment and size output generated by configure-tests
into the OPAL namespace, eliminating cases like opal/util/arch.c
   testing for ompi_fortran_logical_t.
   As this is processor- and compiler-related information
   (e.g. does the compiler/architecture support REAL*16)
   this should have been on the OPAL layer.
 - Unifies f77 code using MPI_Flogical instead of opal_fortran_logical_t

 - Tested locally (Linux/x86-64) with mpich and intel testsuite
   but would like to get this week-ends MTT output


 - PLEASE NOTE: configure-internal macro-names and
   ompi_cv_ variables have not been changed, so that
   external platform (not in contrib/) files still work.

This commit was SVN r21330.
2009-05-30 15:54:29 +00:00
Edgar Gabriel
d93def71ea second part of the 'running out of cids problem', this time focusing on what
happens when hierarch is used. . Two major items:
 - modify the comm_activate step to take an additional argument, indicating
 whether the new communicatio has to go through the collective selection
 step. This is not required sometimes (e.g. when a process calls
 MPI_COMM_SPLIT with color=MPI_UNDEFINED), and contributed significantly to
 the exhaustion of cids.
 - when freeing a communicator, check whether we can reuse the block of cids
 assigned to that comm. This only works if the current front of the cid
 assignment (cid_block_start) is right ater the block of cids assigned to this
 comm.

Fixes trac:1904
Fixes trac:1926

This commit was SVN r21296.

The following Trac tickets were found above:
  Ticket 1904 --> https://svn.open-mpi.org/trac/ompi/ticket/1904
  Ticket 1926 --> https://svn.open-mpi.org/trac/ompi/ticket/1926
2009-05-27 15:21:07 +00:00
Abhishek Kulkarni
b48f13cda4 Minor fix in the man page for MPI_Comm_remote_size
This commit was SVN r21252.
2009-05-19 15:23:44 +00:00
Iain Bason
a282cf062c Roll back Jeff's roll back (r21028) of Iain's changes (r20926, r20941, r20950).
It turns out that the "Intel" interpretation of the MPI spec violates
the Fortran standard (section 14.6.1.1 of the Fortran 95 standard).

This commit was SVN r21225.

The following SVN revision numbers were found above:
  r20926 --> open-mpi/ompi@0a24eadaad
  r20941 --> open-mpi/ompi@045b0e8871
  r20950 --> open-mpi/ompi@73af921c22
  r21028 --> open-mpi/ompi@25249c9843
2009-05-13 18:32:13 +00:00
Jeff Squyres
424d9ed0c8 Fix "reorder" parameter to be logical, per MPI spec.
This commit was SVN r21215.
2009-05-12 14:08:14 +00:00
Edgar Gabriel
0bc8164a11 fix the group_compare operation which failed to recognize unequal groups in
case the first process of the group was not represented at all in the second
group. Also added some cleanup of the code w.r.t. booleans vs. ints.
 
Thanks for Geoffrey Irving for reporting the bug and providing the initial
solution. 

This commit was SVN r21192.
2009-05-08 13:51:28 +00:00
Rainer Keller
2941cb1494 - Fix Coverity CID 525 and 526 --- and some more;
- due to the <= with we could overrun the array
   - we didn't correctly test at _all_, since we never marked the
     ranks already excluded / included...
   - when returning in error, we should free (elements_int_list)...

This commit was SVN r21186.
2009-05-07 16:45:18 +00:00
Jeff Squyres
04f3b23f1b Fix one tiny name change that was missed.
This commit was SVN r21183.
2009-05-06 21:41:59 +00:00
Jeff Squyres
93ed8cf78f Remove this very, very outdated file.
This commit was SVN r21182.
2009-05-06 21:03:34 +00:00
Greg Koenig
60485ff95f This is a very large change to rename several #define values from
OMPI_* to OPAL_*.  This allows opal layer to be used more independent
from the whole of ompi.

NOTE: 9 "svn mv" operations immediately follow this commit.

This commit was SVN r21180.
2009-05-06 20:11:28 +00:00
Rainer Keller
221fb9dbca ... Delayed due to notifier commits earlier this day ...
- Delete unnecessary header files using
   contrib/check_unnecessary_headers.sh after applying
   patches, that include headers, being "lost" due to
   inclusion in one of the now deleted headers...

   In total 817 files are touched.
   In ompi/mpi/c/ header files are moved up into the actual c-file,
   where necessary (these are the only additional #include),
   otherwise it is only deletions of #include (apart from the above
   additions required due to notifier...)

 - To get different MCAs (OpenIB, TM, ALPS), an earlier version was
   successfully compiled (yesterday) on:
   Linux locally using intel-11, gcc-4.3.2 and gcc-SVN + warnings enabled
   Smoky cluster (x86-64 running Linux) using PGI-8.0.2 + warnings enabled
   Lens cluster (x86-64 running Linux) using Pathscale-3.2 + warnings enabled

This commit was SVN r21096.
2009-04-29 01:32:14 +00:00
Shiqing Fan
3d4e0472d6 Add windows support files into the tarball, including .windows, CMakeLists.txt files, and CMake modules. Thanks to Jeff for testing it on Linux.
This commit was SVN r21069.
2009-04-24 16:39:33 +00:00
Jeff Squyres
25249c9843 Roll back r20926, r20941, r20950: Iain's changes from last week.
This has turned into an MPI spec interpretation issue.  :-(

Open MPI has intrepreted the spec one way for the past several years;
these commits reflect a different interpretation that changes how we
treat the EXTRA_STATE parameter to the Fortran attribute copy and
delete callbacks.  This new way breaks our internal copy of the Intel
Fortran attribute tests.  So after talking with Terry/Sun, we're going
to back out these changes (both here and on the v1.3 branch) until we
get further clarification from the Forum.

This commit was SVN r21028.

The following SVN revision numbers were found above:
  r20926 --> open-mpi/ompi@0a24eadaad
  r20941 --> open-mpi/ompi@045b0e8871
  r20950 --> open-mpi/ompi@73af921c22
2009-04-16 14:29:32 +00:00
Ralph Castain
9c39a3edd7 Enable the passing of MCA params to dynamically spawned jobs. This creates a new info_key "ompi_param" that allows a user to specify MCA params for a dynamically spawned job.
We currently apply all of the MCA params in the parent job to the child. This commit allows a user to specify additional params for the child job, and to override any pre-existing params with the new value so they can better control behavior of the child job.

This commit was SVN r20989.
2009-04-14 14:15:49 +00:00
George Bosilca
05ee4c280e Mismatch between the reported subversion and the one in the mpi.h.
Thanks to Rob Egan for the report.

This commit was SVN r20985.
2009-04-14 05:29:07 +00:00
Iain Bason
73af921c22 Update keyval_create functions.
The fix for #1864 in r20926 caused gcc to emit some warnings. Also,
Jeff Squyres pointed out parallel bugs in mpi_type_create_keyval and
mpi_win_create_keyval.

This commit was SVN r20950.

The following SVN revision numbers were found above:
  r20926 --> open-mpi/ompi@0a24eadaad
2009-04-07 13:47:52 +00:00
Iain Bason
0a24eadaad Fix Fortran bindings for MPI_KEYVAL_CREATE and MPI_COMM_CREATE_KEYVAL.
The EXTRA_STATE parameter is passed by reference, and thus should be
dereferenced before it is stored.  Similarly, the stored value should
be passed by reference to the copy and delete routines.

This fixes trac:1864.

This commit was SVN r20926.

The following Trac tickets were found above:
  Ticket 1864 --> https://svn.open-mpi.org/trac/ompi/ticket/1864
2009-04-01 19:31:46 +00:00
Jeff Squyres
bf8defc475 Shaun Jackson noted that MPI_STATUS_IGNORE is actually (effectively)
NULL, so testing for NULL as a bad status parameter here is a bad
idea.

This commit was SVN r20891.
2009-03-28 01:24:41 +00:00
Rainer Keller
a3c3babe01 - Ewww, r20817 messed up PGI on Jaguar big time!
Now, while #include "ompi_config.h" is good and fine in order
   to have OMPI_DECLSPEC,
   here it led to stdint.h (with the uint8_t) being included early
   but INSIDE a namespace "MPI" {}.
   Of course it was included anymore (thinkg #define _STDINT_H), when
   it was required in opal/class/opal_hash_list.h
   NOT good.

 - opal/class/opal_object.h: Yeah, one can have nested extern "C" {}
   but it's not necessary. Instead just have the outer *_C_DECLS.

This commit was SVN r20837.

The following SVN revision numbers were found above:
  r20817 --> open-mpi/ompi@6f808d9b05
2009-03-21 01:37:38 +00:00
Rainer Keller
f5b4e250cb - By include "mpi.h" tell the compiler to look in local include dirs,
first.

This commit was SVN r20800.
2009-03-17 14:44:04 +00:00
Rainer Keller
6a72c0f4d1 - As long as a header declares _DECLSPEC functionality
it should include the corresponding _config.h header file.

   Tested on Linux/x86-64

This commit was SVN r20795.
2009-03-17 01:45:19 +00:00
Rainer Keller
d8cf4c0fec - Get pgcc on XT to complain less:
In case we use memcmp, strlen, strup and friends include <string.h>
   Also several constants.h are not included directly
 - Let's have mca_topo_base_cart_create  return ompi-errors in
   ompi/mca/topo/base/topo_base_cart_create.c

This commit was SVN r20773.
2009-03-13 02:10:32 +00:00
Rainer Keller
9dea63d63a - Last of intrusive commits (promised)... err for now.
Anyway, this is blocking the move: do not include pml.h
   if not really needed, aka none of the following used:
     mca_pml
     MCA_PML_CALL
     OMPI_ANY_TAG
     OMPI_ANY_SOURCE
     OMPI_PROC_NULL

 - Notable exceptions (deleting in one header->adding):
   - ompi/mca/mtl/psm/
   - ompi/mca/osc/rdma/
   - ompi/mca/btl/openib/btl_openib_endpoint.c depended on
     pml_base_sendreq.h

 - Tested on Linux/x86-64, this time including make check
   (thanks Jeff and Ralph)

This commit was SVN r20725.
2009-03-04 17:06:51 +00:00
Rainer Keller
fd28b392bf - An intrusive commit yet again (sorry): with the separation we
get bitten by header depending on having already included
   the corresponding [opal|orte|ompi]_config.h header.
   When separating, things like [OPAL|ORTE|OMPI]_DECLSPEC
   are missed.

   Script to add the corresponding header in front of all following
   (taking care of possible #ifdef HAVE_...)

 - Including some minor cleanups to
   - ompi/group/group.h -- include _after_ #ifndef OMPI_GROUP_H
   - ompi/mca/btl/btl.h -- nclude _after_ #ifndef MCA_BTL_H
   - ompi/mca/crcp/bkmrk/crcp_bkmrk_btl.c -- still no need for
     orte/util/output.h
   - ompi/mca/pml/dr/pml_dr_recvreq.c -- no need for mpool.h
   - ompi/mca/btl/btl.h -- reorder to fit
   - ompi/mca/bml/bml.h -- reorder to fit
   - ompi/runtime/ompi_mpi_finalize.c -- reorder to fit
   - ompi/request/request.h -- additionally need ompi/constants.h

 - Tested on linux/x86-64

This commit was SVN r20720.
2009-03-04 15:35:54 +00:00
Shiqing Fan
2326f14be5 Remove the unnecessary PROJECT command, I somehow misunderstood how it should be used on Windows....
This commit was SVN r20634.
2009-02-25 16:07:43 +00:00
Terry Dontje
0178b6c45f Added padding to predefined handle structures to maintain library version to
version compatibility.

This commit was SVN r20627.
2009-02-24 17:17:33 +00:00
Jeff Squyres
f1a6d170dc Revert part of r20537: per lengtyh discussion on the phone and the
devel list, it ''is'' within in the spirit of MPI to allow
MPI_REQUEST_NULL to be passed to MPI_REQUEST_GET_STATUS.  I filed a
ticket proposal with MPI-2.2 to make this officially accepted:

  https://svn.mpi-forum.org/trac/mpi-forum-web/ticket/137

Plus, r20537 didn't revert out all of the machinery for allowing
MPI_REQUEST_NULL or inactive requests, anyway.  So this commit simply
removes the parameter check that was added in r20537, and we're back
to where we were before this whole conversation.  :-)

This commit was SVN r20616.

The following SVN revision numbers were found above:
  r20537 --> open-mpi/ompi@38aab37bb3
2009-02-20 19:57:46 +00:00
Jeff Squyres
7e210fdaf8 Return MPI_ERR_COMM and MPI_ERR_WIN, respectively, for
MPI_COMM|WIN_SET|GET_ERRHANDLER if a bad MPI handle is passed.  Thanks
to Lisandro Dalcín for reporting the issue.

This commit was SVN r20615.
2009-02-20 19:53:48 +00:00
Jeff Squyres
28f1c995ae Add a decrement to the loop, lest it loop forever.
This commit was SVN r20605.
2009-02-20 02:58:52 +00:00
Rainer Keller
d81443cc5a - On the way to get the BTLs split out and lessen dependency on orte:
Often, orte/util/show_help.h is included, although no functionality
   is required -- instead, most often opal_output.h, or               
   orte/mca/rml/rml_types.h                                           
   Please see orte_show_help_replacement.sh commited next.            

 - Local compilation (Linux/x86_64) w/ -Wimplicit-function-declaration
   actually showed two *missing* #include "orte/util/show_help.h"     
   in orte/mca/odls/base/odls_base_default_fns.c and                  
   in orte/tools/orte-top/orte-top.c                                  
   Manually added these.                                              

   Let's have MTT the last word.

This commit was SVN r20557.
2009-02-14 02:26:12 +00:00
Jeff Squyres
44092c6a21 Don't allow freeing of predefined datatypes. Thanks to Lisandro
Dalcín for reporting the issue.

This commit was SVN r20538.
2009-02-13 00:00:55 +00:00
Jeff Squyres
38aab37bb3 Be a little tougher looking for MPI_*_NULL cases in some functions.
Thanks to Lisandro Dalcín for reporting the issue.

This commit was SVN r20537.
2009-02-12 23:57:41 +00:00
Ralph Castain
62dd763a8f Add ability for local slave spawns to pre-position supporting files. Update comm_spawn and comm_spawn_multiple man pages to cover new info_keys.
This commit was SVN r20527.
2009-02-12 15:56:45 +00:00
Jeff Squyres
c596a1bcb3 Fix MPI_File_c2f -- ensure that if you invoke
MPI_File_c2f(MPI_FILE_NULL), you actually get 0, not -1.  Thanks for
Lisandro Dalcin for the bug report.

This commit was SVN r20511.
2009-02-11 00:48:12 +00:00
Jeff Squyres
aae930e58b s/__n/converted_n/ -- according to C99, symbols that being with "__"
are the domain of the compiler.

This commit was SVN r20462.
2009-02-06 01:04:50 +00:00
George Bosilca
36d496066b Correctly deal with the whole array.
This commit was SVN r20451.
2009-02-05 16:44:43 +00:00