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Граф коммитов

664 Коммитов

Автор SHA1 Сообщение Дата
Ralph Castain
742c0d2284 Fix typo that would cause a segfault if orte_startup_timeout was set
This commit was SVN r31929.
2014-06-02 15:59:18 +00:00
Ralph Castain
8736a1c138 Per RFC:
http://www.open-mpi.org/community/lists/devel/2014/05/14822.php

Revamp the ORTE global data structures to reduce memory footprint and add new features. Add ability to control/set cpu frequency, though this can only be done if the sys admin has setup the system to support it (or you run as root).

This commit was SVN r31916.
2014-06-01 16:14:10 +00:00
Ralph Castain
1107f9099e Per the RFC issued here:
http://www.open-mpi.org/community/lists/devel/2014/05/14827.php

Refactor PMI support

This commit was SVN r31907.
2014-06-01 04:28:17 +00:00
Gilles Gouaillardet
5b9364fc12 Fix a memory leak in orte_register_params()
mca_base_var_register (..., MCA_BASE_VAR_TYPE_STRING, ...)
will dup() the orte_set_slots string, so there is no need
to do this in the first place.

cmr=v1.8.2:reviewer=rhc

This commit was SVN r31773.
2014-05-15 10:31:19 +00:00
Ralph Castain
aaae4841e9 Flush the show_help system on our way out - this also restores the opal_show_help function pointer to the OPAL layer for any subsequent processing.
cmr=v1.8.2:reviewer=jsquyres

This commit was SVN r31685.
2014-05-08 14:37:47 +00:00
Ralph Castain
5602156a1c Use the correct abstraction layer name for the data dirs
This commit was SVN r31684.
2014-05-08 14:32:24 +00:00
Ralph Castain
60c554e097 Ugh - protect that --display-devel print with some NULL checks
This commit was SVN r31604.
2014-05-02 14:28:45 +00:00
Ralph Castain
c7f55be387 Per a user request, add binding info to the simple --diplay-map option
This commit was SVN r31603.
2014-05-02 14:25:59 +00:00
Ralph Castain
c4c9bc1573 As per the RFC:
http://www.open-mpi.org/community/lists/devel/2014/04/14496.php

Revamp the opal database framework, including renaming it to "dstore" to reflect that it isn't a "database". Move the "db" framework to ORTE for now, soon to move to ORCM

This commit was SVN r31557.
2014-04-29 21:49:23 +00:00
Ralph Castain
50c30d62ca Repair builds without hwloc
cmr=v1.7.5:reviewer=jsquyres

This commit was SVN r30940.
2014-03-05 02:48:15 +00:00
Ralph Castain
0ac97761cc Now that we are binding by default, the issue of #slots and what to do when oversubscribed has become a bit more complicated. This isn't a problem in managed environments as we are always provided an accurate assignment for the #slots, or when -host is used to define the allocation since we automatically assume one slot for every time a node is named.
The problem arises when a hostfile is used, and the user provides host names without specifying the slots= paramater. In these cases, we assign slots=1, but automatically allow oversubscription since that number isn't confirmed. We then provide a separate parameter by which the user can direct that we assign the number of slots based on the sensed hardware - e.g., by telling us to set the #slots equal to the #cores on each node. However, this has been set to "off" by default.

In order to make this a little less complex for the user, set the default such that we automatically set #slots equal to #cores (or #hwt's if use_hwthreads_as_cpus has been set) only for those cases where the user provides names in a hostfile but does not provide slot information.

Also cleanup some a couple of issues in the mapping/binding system:

* ensure we only override the binding directive if we are oversubscribed *and* overload is not allowed

* ensure that the MPI procs don't attempt to bind themselves if they are launched by an orted as any binding directive (no matter what it was) would have been serviced by the orted on launch

* minor cleanup to the warning message when oversubscribed and binding was requested

cmr=v1.7.5:reviewer=rhc:subject=update mapping/binding system

This commit was SVN r30909.
2014-03-03 16:46:37 +00:00
Ralph Castain
c3df744a3b Shift the orte_db_localrank key to the opal level. Add the job and proc-level session directory names to the database using opal_db keys.
This commit was SVN r30746.
2014-02-17 01:40:56 +00:00
Ralph Castain
509d5d82b0 Add some verbage requested by Jeff, change the param level to something...?
Refs trac:4275

This commit was SVN r30736.

The following Trac tickets were found above:
  Ticket 4275 --> https://svn.open-mpi.org/trac/ompi/ticket/4275
2014-02-15 15:11:05 +00:00
Ralph Castain
449cd8f3d7 Update a couple of fields, add a scheduler field to proc_info
This commit was SVN r30718.
2014-02-13 23:30:04 +00:00
Ralph Castain
1d8c061687 Fix a race condition that could result in assert failures during finalize. Ensure we shutdown the orte progress thread prior to finalizing the rml/oob frameworks so that no async operations are executing during destruct of the base-level lists and objects.
cmr=v1.7.5:reviewer=jsquyres:subject=fix race condition in finalize

This commit was SVN r30641.
2014-02-08 22:04:19 +00:00
Adrian Reber
fde1040d2f Use unique collective ids for the checkpoint/restart code
This commit was SVN r30552.
2014-02-04 14:03:05 +00:00
Ralph Castain
193cceb483 Okay, since a certain other RM out there made a fuss about being able to lock their daemons to specified cores, offer the same option here. The MCA param orte_daemon_cores can be used to specify which core(s) you want the orte daemons to use. This will have no bearing on the application procs - unbound will remain unbound, and binding directives will be applied to the apps.
Yippee skippee...

This commit was SVN r30513.
2014-01-30 23:50:14 +00:00
Ralph Castain
80497d73cf Need to mark the daemon as alive so that exit commands are properly routed during abnormal terminations. Also, remove stale references to the "selected oob component" as we no longer require only one component be selected
cmr=v1.7.4:reviewer=jsquyres

This commit was SVN r30162.
2014-01-08 22:35:48 +00:00
Brian Barrett
8b778903d8 Fix longstanding issue with our multi-project support. Rather than using
pkg{data,lib,includedir}, use our own ompi{data,lib,includedir}, which is
always set to {datadir,libdir,includedir}/openmpi.  This will keep us from
having help files in prefix/share/open-rte when building without Open MPI,
but in prefix/share/openmpi when building with Open MPI.

This commit was SVN r30140.
2014-01-07 22:11:15 +00:00
Ralph Castain
9c768df8b8 Resolve an unexpected behavior in hostfile allocations. Now that we filter allocations to determine what will be used for mapping, let the initial global pool be the union of nodes from all sources (default hostfile, hostfiles, and dash-hosts). Each app will filter down to only those specified for it using its own hostfile and dash-host options.
cmr=v1.7.4:reviewer=jsquyres:subject=Resolve an unexpected behavior in hostfile allocations

This commit was SVN r30040.
2013-12-21 01:38:27 +00:00
Ralph Castain
71b52fe861 Ensure that comm_spawn'd procs get user-specified forwarded envars
Thanks to Tim Miller for reporting the regression from the 1.6 series

cmr=v1.7.4:reviewer=jsquyres:subject=Ensure that comm_spawn'd procs get user-specified forwarded envars

This commit was SVN r30012.
2013-12-20 14:47:35 +00:00
Ralph Castain
d44e4a311f Per request from Dave Goodell, add support for MPIEXEC_TIMEOUT - if set in the environment, terminate the job after the specified number of seconds has passed. Equivalent to MPICH functionality.
cmr=v1.7.4:reviewer=dgoodell:subject=add support for MPIEXEC_TIMEOUT

This commit was SVN r29831.
2013-12-07 01:58:32 +00:00
Ralph Castain
7480beb7f0 Per request from Nathan, add an offset value to the job struct so we can construct a "global rank" that spans multiple jobs during dynamic launch operations. Store a new ORTE_DB_GLOBAL_RANK value for each process in the database, and ensure that we share our own value during connect_accept so both sides can see it.
This isn't being used yet - just enabling Nathan to do what he needs.

***** NOTE: any use of the OMPI_DB_GLOBAL_RANK database key must be protected by #ifdef OMPI_DB_GLOBAL_RANK as not all RTE's will define this key. *****

This commit was SVN r29708.
2013-11-14 17:01:43 +00:00
Ralph Castain
f1e510154c Revise the launch timeout detection so we don't mistakenly declare "failed to start". Recognize that timeout is at the per-job level, and define the timeout param as a total value instead of seconds/daemon as it otherwise can get to be an enormous (and useless) number.
Resolves problems in loop_spawn where the timer was incorrectly firing and killing the overall job.

cmr=v1.7.4:reviewer=hjelmn

This commit was SVN r29661.
2013-11-11 23:50:40 +00:00
Ralph Castain
e35ad23176 Correctly compute usage for dynamic spawns when binding is invoked. Ensure we correctly account for existing process usage on each node when computing bindings during dynamic spawns.
cmr=v1.7.4:reviewer=hjelmn:subject=Correctly compute usage for dynamic spawns when binding is invoked

This commit was SVN r29649.
2013-11-10 00:38:01 +00:00
Ralph Castain
604970a1a2 Initialize orte_coprocessors hash table to NULL. Delay coprocessor detection on HNP until after node topology final definition in case rmaps changes it. Minor spacing change.
Refs trac:3847

This commit was SVN r29504.

The following Trac tickets were found above:
  Ticket 3847 --> https://svn.open-mpi.org/trac/ompi/ticket/3847
2013-10-24 00:08:47 +00:00
Ralph Castain
b12167abef Per a good suggestion from Jeff, make the coprocessor mapping more scalable by using a hash table to cache the coprocessor list, and then do a single pass thru the nodes at the end to assign hostid's.
Refs trac:3847

This commit was SVN r29439.

The following Trac tickets were found above:
  Ticket 3847 --> https://svn.open-mpi.org/trac/ompi/ticket/3847
2013-10-14 22:01:48 +00:00
Ralph Castain
24c811805f ****************************************************************
This change contains a non-mandatory modification
       of the MPI-RTE interface. Anyone wishing to support
       coprocessors such as the Xeon Phi may wish to add
       the required definition and underlying support
****************************************************************

Add locality support for coprocessors such as the Intel Xeon Phi.

Detecting that we are on a coprocessor inside of a host node isn't straightforward. There are no good "hooks" provided for programmatically detecting that "we are on a coprocessor running its own OS", and the ORTE daemon just thinks it is on another node. However, in order to properly use the Phi's public interface for MPI transport, it is necessary that the daemon detect that it is colocated with procs on the host.

So we have to split the locality to separately record "on the same host" vs "on the same board". We already have the board-level locality flag, but not quite enough flexibility to handle this use-case. Thus, do the following:

1. add OPAL_PROC_ON_HOST flag to indicate we share a host, but not necessarily the same board

2. modify OPAL_PROC_ON_NODE to indicate we share both a host AND the same board. Note that we have to modify the OPAL_PROC_ON_LOCAL_NODE macro to explicitly check both conditions

3. add support in opal/mca/hwloc/base/hwloc_base_util.c for the host to check for coprocessors, and for daemons to check to see if they are on a coprocessor. The former is done via hwloc, but support for the latter is not yet provided by hwloc. So the code for detecting we are on a coprocessor currently is Xeon Phi specific - hopefully, we will find more generic methods in the future.

4. modify the orted and the hnp startup so they check for coprocessors and to see if they are on a coprocessor, and have the orteds pass that info back in their callback message. Automatically detect that coprocessors have been found and identify which coprocessors are on which hosts. Note that this algo isn't scalable at the moment - this will hopefully be improved over time.

5. modify the ompi proc locality detection function to look for coprocessor host info IF the OMPI_RTE_HOST_ID database key has been defined. RTE's that choose not to provide this support do not have to do anything - the associated code will simply be ignored.

6. include some cleanup of the hwloc open/close code so it conforms to how we did things in other frameworks (e.g., having a single "frame" file instead of open/close). Also, fix the locality flags - e.g., being on the same node means you must also be on the same cluster/cu, so ensure those flags are also set.

cmr:v1.7.4:reviewer=hjelmn

This commit was SVN r29435.
2013-10-14 16:52:58 +00:00
Ralph Castain
f4f2287958 Singletons currently start out by spawning an HNP - this is required solely in the cases where the singleton subsequently calls MPI_Comm_spawn or publishes port info without support from an external orte-server. In all other cases, the HNP is of no value and can actually be a detriment by creating additional overhead on the node. This is particularly concerning for async operations where processes may begin as singletons and then dynamically wireup to perform pt2pt communications.
So we now allow singletons to start on their own, only spawning an HNP when initiating an operation that actually requires it.

cmr:v1.7.4:reviewer=jsquyres

This commit was SVN r29354.
2013-10-04 02:58:26 +00:00
Ralph Castain
d565a76814 Do some cleanup of the way we handle modex data. Identify data that needs to be shared with peers in my job vs data that needs to be shared with non-peers - no point in sharing extra data. When we share data with some process(es) from another job, we cannot know in advance what info they have or lack, so we have to share everything just in case. This limits the optimization we can do for things like comm_spawn.
Create a new required key in the OMPI layer for retrieving a "node id" from the database. ALL RTE'S MUST DEFINE THIS KEY. This allows us to compute locality in the MPI layer, which is necessary when we do things like intercomm_create.

cmr:v1.7.4:reviewer=rhc:subject=Cleanup handling of modex data

This commit was SVN r29274.
2013-09-27 00:37:49 +00:00
Ralph Castain
a200e4f865 As per the RFC, bring in the ORTE async progress code and the rewrite of OOB:
*** THIS RFC INCLUDES A MINOR CHANGE TO THE MPI-RTE INTERFACE ***

Note: during the course of this work, it was necessary to completely separate the MPI and RTE progress engines. There were multiple places in the MPI layer where ORTE_WAIT_FOR_COMPLETION was being used. A new OMPI_WAIT_FOR_COMPLETION macro was created (defined in ompi/mca/rte/rte.h) that simply cycles across opal_progress until the provided flag becomes false. Places where the MPI layer blocked waiting for RTE to complete an event have been modified to use this macro.

***************************************************************************************

I am reissuing this RFC because of the time that has passed since its original release. Since its initial release and review, I have debugged it further to ensure it fully supports tests like loop_spawn. It therefore seems ready for merge back to the trunk. Given its prior review, I have set the timeout for one week.

The code is in  https://bitbucket.org/rhc/ompi-oob2


WHAT:    Rewrite of ORTE OOB

WHY:       Support asynchronous progress and a host of other features

WHEN:    Wed, August 21

SYNOPSIS:
The current OOB has served us well, but a number of limitations have been identified over the years. Specifically:

* it is only progressed when called via opal_progress, which can lead to hangs or recursive calls into libevent (which is not supported by that code)

* we've had issues when multiple NICs are available as the code doesn't "shift" messages between transports - thus, all nodes had to be available via the same TCP interface.

* the OOB "unloads" incoming opal_buffer_t objects during the transmission, thus preventing use of OBJ_RETAIN in the code when repeatedly sending the same message to multiple recipients

* there is no failover mechanism across NICs - if the selected NIC (or its attached switch) fails, we are forced to abort

* only one transport (i.e., component) can be "active"


The revised OOB resolves these problems:

* async progress is used for all application processes, with the progress thread blocking in the event library

* each available TCP NIC is supported by its own TCP module. The ability to asynchronously progress each module independently is provided, but not enabled by default (a runtime MCA parameter turns it "on")

* multi-address TCP NICs (e.g., a NIC with both an IPv4 and IPv6 address, or with virtual interfaces) are supported - reachability is determined by comparing the contact info for a peer against all addresses within the range covered by the address/mask pairs for the NIC.

* a message that arrives on one TCP NIC is automatically shifted to whatever NIC that is connected to the next "hop" if that peer cannot be reached by the incoming NIC. If no TCP module will reach the peer, then the OOB attempts to send the message via all other available components - if none can reach the peer, then an "error" is reported back to the RML, which then calls the errmgr for instructions.

* opal_buffer_t now conforms to standard object rules re OBJ_RETAIN as we no longer "unload" the incoming object

* NIC failure is reported to the TCP component, which then tries to resend the message across any other available TCP NIC. If that doesn't work, then the message is given back to the OOB base to try using other components. If all that fails, then the error is reported to the RML, which reports to the errmgr for instructions

* obviously from the above, multiple OOB components (e.g., TCP and UD) can be active in parallel

* the matching code has been moved to the RML (and out of the OOB/TCP component) so it is independent of transport

* routing is done by the individual OOB modules (as opposed to the RML). Thus, both routed and non-routed transports can simultaneously be active

* all blocking send/recv APIs have been removed. Everything operates asynchronously.


KNOWN LIMITATIONS:

* although provision is made for component failover as described above, the code for doing so has not been fully implemented yet. At the moment, if all connections for a given peer fail, the errmgr is notified of a "lost connection", which by default results in termination of the job if it was a lifeline

* the IPv6 code is present and compiles, but is not complete. Since the current IPv6 support in the OOB doesn't work anyway, I don't consider this a blocker

* routing is performed at the individual module level, yet the active routed component is selected on a global basis. We probably should update that to reflect that different transports may need/choose to route in different ways

* obviously, not every error path has been tested nor necessarily covered

* determining abnormal termination is more challenging than in the old code as we now potentially have multiple ways of connecting to a process. Ideally, we would declare "connection failed" when *all* transports can no longer reach the process, but that requires some additional (possibly complex) code. For now, the code replicates the old behavior only somewhat modified - i.e., if a module sees its connection fail, it checks to see if it is a lifeline. If so, it notifies the errmgr that the lifeline is lost - otherwise, it notifies the errmgr that a non-lifeline connection was lost.

* reachability is determined solely on the basis of a shared subnet address/mask - more sophisticated algorithms (e.g., the one used in the tcp btl) are required to handle routing via gateways

* the RML needs to assign sequence numbers to each message on a per-peer basis. The receiving RML will then deliver messages in order, thus preventing out-of-order messaging in the case where messages travel across different transports or a message needs to be redirected/resent due to failure of a NIC

This commit was SVN r29058.
2013-08-22 16:37:40 +00:00
Ralph Castain
16c5b30a1f Since the calls to "PMI get" scale by number of procs (not nodes), it makes more sense to have the MCA param be the cutoff based on number of procs. Also, it occurred to me that this shouldn't impact the nidmap process as that is built and circulated when we launch via mpirun, not during direct launch.
So shift the cutoff param to the MPI layer, and have it solely determine whether or not we call modex_recv on the hostname. If comm_world is of size greater than the cutoff, then we don't automatically retrieve the hostname when we build the ompi_proc_t for a process - instead, we fill the hostname entry on first call to modex_recv for that process.

The param is now "ompi_hostname_cutoff=N", where N=number of procs for cutoff.

Refs trac:3729

This commit was SVN r29056.

The following Trac tickets were found above:
  Ticket 3729 --> https://svn.open-mpi.org/trac/ompi/ticket/3729
2013-08-22 03:40:26 +00:00
Ralph Castain
45e695928f As per the email discussion, revise the sparse handling of hostnames so that we avoid potential infinite loops while allowing large-scale users to improve their startup time:
* add a new MCA param orte_hostname_cutoff to specify the number of nodes at which we stop including hostnames. This defaults to INT_MAX => always include hostnames. If a value is given, then we will include hostnames for any allocation smaller than the given limit.

* remove ompi_proc_get_hostname. Replace all occurrences with a direct link to ompi_proc_t's proc_hostname, protected by appropriate "if NULL"

* modify the OMPI-ORTE integration component so that any call to modex_recv automatically loads the ompi_proc_t->proc_hostname field as well as returning the requested info. Thus, any process whose modex info you retrieve will automatically receive the hostname. Note that on-demand retrieval is still enabled - i.e., if we are running under direct launch with PMI, the hostname will be fetched upon first call to modex_recv, and then the ompi_proc_t->proc_hostname field will be loaded

* removed a stale MCA param "mpi_keep_peer_hostnames" that was no longer used anywhere in the code base

* added an envar lookup in ess/pmi for the number of nodes in the allocation. Sadly, PMI itself doesn't provide that info, so we have to get it a different way. Currently, we support PBS-based systems and SLURM - for any other, rank0 will emit a warning and we assume max number of daemons so we will always retain hostnames

This commit was SVN r29052.
2013-08-20 18:59:36 +00:00
Ralph Castain
bebe852057 Add new info key for publish that allows user to designate that the port is to be unique - i.e., to return an error if that service has already been published. Default is to overwrite
This commit was SVN r29028.
2013-08-14 04:21:17 +00:00
Nathan Hjelm
841ed962f6 fix MCA variable and component system leaks
cmr=v1.7.3:reviewer=rhc

This commit was SVN r29011.
2013-08-09 19:50:28 +00:00
Nathan Hjelm
ebbb32120a MCA/base: variable system updates
- Use an enumerator to handle bool values.

 - Fix a leak in the variable enumerator.

 - Fix a leak in an orte parameter.

This commit was SVN r28949.
2013-07-25 15:42:01 +00:00
Ralph Castain
563bf60fb8 Fix an ordering problem that crept in due to the change in MCA param system. One MCA param would set a value, and then we did a hard reset of that value before testing another MCA param, thus removing a critical value for proper operation of the first param.
cmr:v1.7.3:reviewer=brbarret

This commit was SVN r28788.
2013-07-14 16:22:13 +00:00
Jeff Squyres
b9ca8e3cd1 Tweaked the help message a bit (this is the end result of iterating on
the message in email between Mike, Ralph, Jeff).

Add this to CMR #3642 and #3643.

This commit was SVN r28662.
2013-06-20 13:19:23 +00:00
Ralph Castain
13665bffe8 Per an off-list discussion, it appears possible for a system to report failure when executing getpwuid. There are several reasons for this error to occur, most notably if the system uses a network-based authentication protocol (e.g., NIS) and that sytem gets overwhelmed when we launch on a lot of nodes.
There is no good way to recover from this scenario, and from past experience, using the user's name in the session directory (as opposed to the uid) is very helpful when things go wrong. So print a help message when this happens (it is extremely rare, but has happened at least once now) and return an error.

cmr:v1.7.3,reviewer=jsquyres
cmr:v1.6.5,reviewer=jsquyres

This commit was SVN r28658.
2013-06-20 04:30:42 +00:00
Jeff Squyres
089c632cce Remove a bunch of dead code: gcc 4.7 warns of set-but-unused
variables.  So get rid of them.

This commit was SVN r28538.
2013-05-17 21:45:49 +00:00
Ralph Castain
93ba4247f8 remove extra paren when --without-hwloc
This commit was SVN r28530.
2013-05-15 21:31:45 +00:00
Ralph Castain
5296099ecb Fix the cpus-per-rank when binding to hwthreads. Add cpus-per-rank to diag printout
Thanks to Elena for reporting the problem

This commit was SVN r28508.
2013-05-14 20:17:50 +00:00
Ralph Castain
27e3e382d5 No need for ORTE tools to use orte progress thread
This commit was SVN r28445.
2013-05-04 21:13:20 +00:00
Nathan Hjelm
bccf8c657a Per RFC add initial support for the MPI 3.0 tools interface.
Current MPI_T support:
  - Full cvar interface.
  - Full categories interface.
  - No pvar support at this time.

This commit was SVN r28376.
2013-04-24 15:59:23 +00:00
Ralph Castain
45af6cf59e The move of the orte_db framework to opal required that we create an opaque opal_identifier_t type as OPAL cannot know anything about the ORTE process name. However, passing a value down to opal and then having the db components reference it causes alignment issues on Solaris Sparc platforms. So pass the pointer instead and do the old "memcpy" trick to avoid the problem.
This commit was SVN r28308.
2013-04-08 23:34:16 +00:00
Ralph Castain
1b5b9afa85 Silence warnings
This commit was SVN r28244.
2013-03-27 21:56:46 +00:00
Nathan Hjelm
9d4a26f47d Update OMPI frameworks to use the MCA framework system.
Notes:
  - This commit also eliminates the need for an available components list in use
    in several frameworks. None of the code in question was making use of the
    priority field of the priority component list item so these extra lists were
    removed.
  - Cleaned up selection code in several frameworks to sort lists using opal_list_sort.
  - Cleans up the ompi/orte-info functions. Expose the functions that construct the
    list of params so they can be used elsewhere.

patches for mtl/portals4 from brian

missed a few output variables in openib

This commit was SVN r28241.
2013-03-27 21:17:31 +00:00
Nathan Hjelm
c041156f60 Update ORTE frameworks to use the MCA framework system.
This commit was SVN r28240.
2013-03-27 21:14:43 +00:00
Nathan Hjelm
cf377db823 MCA/base: Add new MCA variable system
Features:
 - Support for an override parameter file (openmpi-mca-param-override.conf).
   Variable values in this file can not be overridden by any file or environment
   value.
 - Support for boolean, unsigned, and unsigned long long variables.
 - Support for true/false values.
 - Support for enumerations on integer variables.
 - Support for MPIT scope, verbosity, and binding.
 - Support for command line source.
 - Support for setting variable source via the environment using
   OMPI_MCA_SOURCE_<var name>=source (either command or file:filename)
 - Cleaner API.
 - Support for variable groups (equivalent to MPIT categories).

Notes:
 - Variables must be created with a backing store (char **, int *, or bool *)
   that must live at least as long as the variable.
 - Creating a variable with the MCA_BASE_VAR_FLAG_SETTABLE enables the use of
   mca_base_var_set_value() to change the value.
 - String values are duplicated when the variable is registered. It is up to
   the caller to free the original value if necessary. The new value will be
   freed by the mca_base_var system and must not be freed by the user.
 - Variables with constant scope may not be settable.
 - Variable groups (and all associated variables) are deregistered when the
   component is closed or the component repository item is freed. This
   prevents a segmentation fault from accessing a variable after its component
   is unloaded.
 - After some discussion we decided we should remove the automatic registration
   of component priority variables. Few component actually made use of this
   feature.
 - The enumerator interface was updated to be general enough to handle
   future uses of the interface.
 - The code to generate ompi_info output has been moved into the MCA variable
   system. See mca_base_var_dump().

opal: update core and components to mca_base_var system
orte: update core and components to mca_base_var system
ompi: update core and components to mca_base_var system

This commit also modifies the rmaps framework. The following variables were
moved from ppr and lama: rmaps_base_pernode, rmaps_base_n_pernode,
rmaps_base_n_persocket. Both lama and ppr create synonyms for these variables.

This commit was SVN r28236.
2013-03-27 21:09:41 +00:00
Ralph Castain
317915225c Finish the binding cleanup by removing the no-longer-used binding level scheme. This proved to be fallible as there is no guarantee that the hierarchy it used matched physical reality of the machine (e.g., is L3 "above" the socket or not). Still have to complete the ppr update, but get the rest of it correct.
This commit was SVN r28223.
2013-03-26 20:09:49 +00:00
Ralph Castain
6ee32767d4 Restore the cpus-per-proc option for byslot and bynode mapping. Remove the bind_idx (which recorded the index of the hwloc object where the proc was bound) as this would no longer be unique, and just use the bitmap as the standard reference for location. Update the relative locality computation to take bitmaps as its argument.
This commit was SVN r28219.
2013-03-26 18:27:50 +00:00
Ralph Castain
147c6ff9e7 Clean out the cruft leftover from the use_common_ports experiment
cmr:v1.7

This commit was SVN r28184.
2013-03-20 15:07:43 +00:00
Ralph Castain
a4b6fb241f Remove all remaining vestiges of the Windows integration
This commit was SVN r28137.
2013-02-28 17:31:47 +00:00
Ralph Castain
cf9796accd Remove the old configure option for disabling full rte support - we now use the OMPI rte framework for such purposes
This commit was SVN r28134.
2013-02-28 01:35:55 +00:00
Ralph Castain
bd9265c560 Per the meeting on moving the BTLs to OPAL, move the ORTE database "db" framework to OPAL so the relocated BTLs can access it. Because the data is indexed by process, this requires that we define a new "opal_identifier_t" that corresponds to the orte_process_name_t struct. In order to support multiple run-times, this is defined in opal/mca/db/db_types.h as a uint64_t without identifying the meaning of any part of that data.
A few changes were required to support this move:

1. the PMI component used to identify rte-related data (e.g., host name, bind level) and package them as a unit to reduce the number of PMI keys. This code was moved up to the ORTE layer as the OPAL layer has no understanding of these concepts. In addition, the component locally stored data based on process jobid/vpid - this could no longer be supported (see below for the solution).

2. the hash component was updated to use the new opal_identifier_t instead of orte_process_name_t as its index for storing data in the hash tables. Previously, we did a hash on the vpid and stored the data in a 32-bit hash table. In the revised system, we don't see a separate "vpid" field - we only have a 64-bit opaque value. The orte_process_name_t hash turned out to do nothing useful, so we now store the data in a 64-bit hash table. Preliminary tests didn't show any identifiable change in behavior or performance, but we'll have to see if a move back to the 32-bit table is required at some later time.

3. the db framework was a "select one" system. However, since the PMI component could no longer use its internal storage system, the framework has now been changed to a "select many" mode of operation. This allows the hash component to handle all internal storage, while the PMI component only handles pushing/pulling things from the PMI system. This was something we had planned for some time - when fetching data, we first check internal storage to see if we already have it, and then automatically go to the global system to look for it if we don't. Accordingly, the framework was provided with a custom query function used during "select" that lets you seperately specify the "store" and "fetch" ordering.

4. the ORTE grpcomm and ess/pmi components, and the nidmap code,  were updated to work with the new db framework and to specify internal/global storage options.

No changes were made to the MPI layer, except for modifying the ORTE component of the OMPI/rte framework to support the new db framework.

This commit was SVN r28112.
2013-02-26 17:50:04 +00:00
Ralph Castain
c0b670bea8 I guess some profiling tools and debuggers require that the argv[0] of each rank be unique so they can create a filename based on that value. For those obscure cases, provide an mpirun cmd line option that indexes each argv[0] by rank
This commit was SVN r28064.
2013-02-15 20:20:49 +00:00
Ralph Castain
a591fbf06f Add initial support for dynamic allocations. At this time, only Slurm supports the new capability, which will be included in an upcoming release.
Add hooks for supporting dynamic allocation and deallocation to support application-driven requests and fault recovery operations.

This commit was SVN r27879.
2013-01-20 00:33:42 +00:00
Ralph Castain
c96cc2d5a0 In order to properly connect to debuggers like STAT, we need to get the hostname in its unstripped version for the MPIR_proctab. Unfortunately, we need a stripped version for Cray's alps launcher. So when we are stripping the hostname prefix, retain alias hostnames and add the ability to specify an alias to use in the proctab.
This commit was SVN r27863.
2013-01-18 05:00:05 +00:00
Ralph Castain
97ee683275 Track parentage of procs
This commit was SVN r27758.
2013-01-08 04:41:12 +00:00
Nathan Hjelm
6a9ab9b221 Change orte_startup_timeout to be in seconds and remove the 10 second maximum
This commit was SVN r27741.
2013-01-03 23:56:34 +00:00
Ralph Castain
81a8e21939 Need to have the event thread running during init/finalize, but we still have a problem with cleanup - so comment out the event_base_free for now.
This commit was SVN r27738.
2013-01-03 02:16:57 +00:00
Ralph Castain
64da742d5f Remove the orte_finalize_event variable - no longer needed
This commit was SVN r27722.
2012-12-25 19:33:20 +00:00
Ralph Castain
cada035f38 Fix the segfault problem in the orteds - turns out it only occurred with progress threads enabled. Ensure the thread gets started at the right time (at the end of init), although the event base gets created earlier. Remove the finalize event as we can instead use the loopbreak call to exit the event loop.
This commit was SVN r27721.
2012-12-25 19:30:18 +00:00
Ralph Castain
c8e34813b6 THIS IS A TEMPORARY FIX - do not finalize opal as the parameter system has been broken and will segfault when finalized.
THIS PATCH MUST BE REMOVED WHEN THE PARAMETER SYSTEM HAS BEEN FIXED.

This commit was SVN r27720.
2012-12-24 18:42:19 +00:00
Ralph Castain
e11f32038a Add an MCA param to retain all aliases based on IP addrs for node names so that procs can look them up by interface, if desired. If the param is set, pass aliases around to all daemons and procs for local use
This commit was SVN r27619.
2012-11-16 04:04:29 +00:00
Ralph Castain
da6428a822 Add an MCA param to help debug the ORTE progress thread
This commit was SVN r27614.
2012-11-15 15:54:38 +00:00
Ralph Castain
5241925b62 Add the dfs to ompi_info
This commit was SVN r27613.
2012-11-15 15:54:07 +00:00
Ralph Castain
fefec03e78 Enable all ORTE tools to use progress threads if they are enabled
This commit was SVN r27593.
2012-11-12 02:54:09 +00:00
Ralph Castain
bd887f7f56 Add a new "test" component to the DFS that treats all files as remote in order to test the app-to-daemon interactions on a single machine. Set a global param to indicate we are using staged execution. Add a param to indicate it is okay for non-MPI processes to execute without finalizing. Cleanup file map load and fetch operations.
This commit was SVN r27587.
2012-11-10 14:09:12 +00:00
Nathan Hjelm
a754674fd7 Per the specification for putenv (http://pubs.opengroup.org/onlinepubs/009604599/functions/putenv.html) the string given to putenv becomes part of the environment. The string must not be changed or freed.
cmr:v1.7

This commit was SVN r27578.
2012-11-09 16:33:14 +00:00
Ralph Castain
3812979315 Remove stale file - we removed the size functions awhile back
This commit was SVN r27551.
2012-11-01 03:36:51 +00:00
Ralph Castain
a080de188f Enable orterun to directly support staged execution, treating each app as a separate job. Support transfer of file maps when support exists.
This commit was SVN r27516.
2012-10-29 23:11:30 +00:00
Ralph Castain
4e52a15e70 Provide for sync on seek and close DFS operations. Eliminate an unnecessary wake-up timer when using ORTE progress thread
This commit was SVN r27500.
2012-10-26 15:49:04 +00:00
Ralph Castain
35e5e5b512 Set the orte_event_base to the opal_event_base in ompi_info - we aren't doing anything with progress threads anyway
This commit was SVN r27488.
2012-10-25 22:36:08 +00:00
Ralph Castain
79e36413c2 There was some discussion of this at an earlier time, but we never got around to doing it - so make orte behave more like a regular library, counting the number of times init is called, and executing finalize when all those are exhausted.
This commit was SVN r27484.
2012-10-25 18:39:37 +00:00
Ralph Castain
4028ce7a5d Silence warnings by making types match
This commit was SVN r27446.
2012-10-14 03:45:28 +00:00
Ralph Castain
285a3b168d Add an ability to specify the max number of simultaneous procs/node for an application when operating in staged mode. Change some debug statements from OPAL_OUTPUT_VERBOSE to opal_output_verbose so they are available in optimized builds.
This commit was SVN r27445.
2012-10-14 03:31:32 +00:00
Jeff Squyres
fb2e543a57 Refs trac:3275.
We ran into a case where the OMPI SVN trunk grew a new acceptable MCA
parameter value, but this new value was not accepted on the v1.6
branch (hwloc_base_mem_bind_failure_action -- on the trunk it accepts
the value "silent", but on the older v1.6 branch, it doesn't).  If you
set "hwloc_base_mem_bind_failure_action=silent" in the default MCA
params file and then accidentally ran with the v1.6 branch, every OMPI
executable (including ompi_info) just failed because hwloc_base_open()
would say "hey, 'silent' is not a valid value for
hwloc_base_mem_bind_failure_action!".  Kaboom.

The only problem is that it didn't give you any indication of where
this value was being set.  Quite maddening, from a user perspective.

So we changed the ompi_info handles this case.  If any framework open
function return OMPI_ERR_BAD_PARAM (either because its base MCA params
got a bad value or because one of its component register/open
functions return OMPI_ERR_BAD_PARAM), ompi_info will stop, print out
a warning that it received and error, and then dump out the parameters
that it has received so far in the framework that had a problem.

At a minimum, this will show the user the MCA param that had an error
(it's usually the last one), and ''where it was set from'' (so that
they can go fix it).  

We updated ompi_info to check for O???_ERR_BAD_PARAM from each from
the framework opens.  Also updated the doxygen docs in mca.h for this
O???_BAD_PARAM behavior.  And we noticed that mca.h had MCA_SUCCESS
and MCA_ERR_??? codes.  Why?  I think we used them in exactly one
place in the code base (mca_base_components_open.c).  So we deleted
those and just used the normal OPAL_* codes instead.

While we were doing this, we also cleaned up a little memory
management during ompi_info/orte-info/opal-info finalization.
Valgrind still reports a truckload of memory still in use at ompi_info
termination, but they mostly look to be components not freeing
memory/resources properly (and outside the scope of this fix).

This commit was SVN r27306.

The following Trac tickets were found above:
  Ticket 3275 --> https://svn.open-mpi.org/trac/ompi/ticket/3275
2012-09-11 20:47:24 +00:00
Ralph Castain
a0ffeb205a Add an orted component for staged operations and rename the staged component to "staged_hnp".
This commit was SVN r27305.
2012-09-11 20:35:46 +00:00
Ralph Castain
d772e0fc3d Add an option to treat dash-host specifications as "requested, but not required". So-called "soft" location requests can allow an application to execute even if the ideal allocation isn't available.
This commit was SVN r27242.
2012-09-05 18:42:09 +00:00
Ralph Castain
fde83a44ab This confusion has been around for awhile, caused by a long-ago decision to track slots allocated to a specific job as opposed to allocated to the overall mpirun instance. We eliminated that quite a while ago, but never consolidated the "slots_alloc" and "slots" fields in orte_node_t. As a result, confusion has grown in the code base as to which field to look at and/or update.
So (finally) consolidate these two fields into one "slots" field. Add a field in orte_job_t to indicate when all the procs for a job will be launched together, so that staged operations can know when MPI operations are allowed.

This commit was SVN r27239.
2012-09-05 01:30:39 +00:00
Ralph Castain
bae5dab916 If (and only if) a user requests, set the default number of slots on any node to the number of objects of the specified type. This *only* takes effect in an unmanaged environment - i.e., if an external resource manager assigns us a number of slots, then that is what we use. However, if we are using a hostfile, then the user may or may not have given us a value for the number of slots on each node.
For those nodes (and *only* those nodes) where the user does *not* specify a slot count, we will set the number of slots according to their direction: either to the number of cores, numas, sockets, or hwthreads. Otherwise, the slot count is set to 1.

Note that the default behavior remains unchanged: in the absence of any value for #slots, and in the absence of any directive to set #slots, we will set #slots=1.

This commit was SVN r27236.
2012-09-04 20:58:26 +00:00
Ralph Castain
11de735e8a Complete the revamp of hostfile support in non-managed environments. Working at the app level, ensure that we utilize only those nodes specified for that app, but fall back to the default hostfile (if available) for those with no specification, further falling back to the local host if the default hostfile is not present or is empty.
This commit was SVN r27230.
2012-09-04 16:34:05 +00:00
Ralph Castain
1b659de132 Get staged execution working on multi-node setups. Improve efficiency by only remapping if all procs not yet mapped in the job.
This commit was SVN r27181.
2012-08-29 20:35:52 +00:00
Ralph Castain
98580c117b Introduce staged execution. If you don't have adequate resources to run everything without oversubscribing, don't want to oversubscribe, and aren't using MPI, then staged execution lets you (a) run as many procs as there are available resources, and (b) start additional procs as others complete and free up resources. Adds a new mapper as well as a new state machine.
Remove some stale configure.m4's we no longer need.

Optimize the nidmaps a bit by only sending info that has changed each time, instead of sending a complete copy of everything. Makes no difference for the typical MPI job - only impacts things like staged execution where we are sending multiple (possibly many) launch messages.

This commit was SVN r27165.
2012-08-28 21:20:17 +00:00
Ralph Castain
e0c39c94e8 Complete the cleanup of the preload files system. Remove the dest_dir option as moving things to arbitrary locations - especially absolute paths - can prove disastrous. Remove the preload_libs option as these can be treated as just files. Cleanup some of the pack/unpack code as the dss handles NULL strings just fine. Deal a little better with absolute paths, noting that tar now strips the leading '/' for us (showing my age as it didn't used to do so).
Remove the odls_base_state.c file as that code is now covered by the new broadcast form of preload_files.

This commit was SVN r27127.
2012-08-24 02:28:29 +00:00
Ralph Castain
b4a544ad2a Per discussion with Josh, use the --preload-xxx cmd line options to broadcast files to all nodes. Add --set-cwd-to-session-dir option to start procs in their session directories. Add OMPI_FILE_LOCATION envar to tell procs where their prepositioned files went.
This commit was SVN r27125.
2012-08-23 21:28:05 +00:00
Ralph Castain
e4d82b8912 Turn off the common port by default by now until we get rollup working properly on ALL platforms
This commit was SVN r27060.
2012-08-15 22:13:04 +00:00
Ralph Castain
cb48fd52d4 Implement the MPI_Info part of MPI-3 Ticket 313. Add an MPI_info object MPI_INFO_GET_ENV that contains a number of run-time related pieces of info. This includes all the required ones in the ticket, plus a few that specifically address recent user questions:
"num_app_ctx" - the number of app_contexts in the job
"first_rank" - the MPI rank of the first process in each app_context
"np" - the number of procs in each app_context

Still need clarification on the MPI_Init portion of the ticket. Specifically, does the ticket call for returning an error is someone calls MPI_Init more than once in a program? We set a flag to tell us that we have been initialized, but currently never check it.

This commit was SVN r27005.
2012-08-12 01:28:23 +00:00
Ralph Castain
431d5361ed For those who really preferred our prior mode of operation that mapped procs and only launched daemons on the nodes that had procs on them, introduce the "novm" state machine component. This recreates the old mode of operation by re-ordering the launch sequence so that we allocate, then map, and then launch daemons only on the reqd nodes (instead of across the entire allocation).
This commit was SVN r26946.
2012-08-03 16:30:05 +00:00
Shiqing Fan
660188307c fix an export declaration name
This commit was SVN r26895.
2012-07-27 13:26:24 +00:00
Shiqing Fan
8c4a3e1269 correct the symbol dllexports for windows build
This commit was SVN r26827.
2012-07-22 08:54:50 +00:00
Ralph Castain
e335de3564 Refactor ompi_info, splitting it into parts according to the layer involved. Thus, we call down to the opal layer to get those frameworks and components, and down to the orte layer to get those. Still some abstraction breaks, but they mostly involve renaming of OMPI_foo labels that have been around since before we split the build system by layer.
This commit was SVN r26695.
2012-06-28 18:23:34 +00:00
Ralph Castain
0dfe29b1a6 Roll in the rest of the modex change. Eliminate all non-modex API access of RTE info from the MPI layer - in some cases, the info was already present (either in the ompi_proc_t or in the orte_process_info struct) and no call was necessary. This removes all calls to orte_ess from the MPI layer. Calls to orte_grpcomm remain required.
Update all the orte ess components to remove their associated APIs for retrieving proc data. Update the grpcomm API to reflect transfer of set/get modex info to the db framework.

Note that this doesn't recreate the old GPR. This is strictly a local db storage that may (at some point) obtain any missing data from the local daemon as part of an async methodology. The framework allows us to experiment with such methods without perturbing the default one.

This commit was SVN r26678.
2012-06-27 14:53:55 +00:00
Ralph Castain
b990c65a53 Remove another antiquated dss function - the 'size' API isn't used anywhere since the GPR went away
This commit was SVN r26646.
2012-06-25 13:33:45 +00:00
Ralph Castain
abe7dd8274 Cleanup the dss by removing unused functions
This commit was SVN r26644.
2012-06-23 21:20:09 +00:00
Ralph Castain
019857b616 Ensure that we don't attempt to use common ports if --disable-static was specified.
This commit was SVN r26620.
2012-06-20 03:14:11 +00:00
Ralph Castain
9b026c6695 For now, run MTT with the use_common_port option enabled. This would be the desirable scenario for users, especially at scale, so let's see if it creates any issues.
This commit was SVN r26609.
2012-06-15 15:46:38 +00:00
Ralph Castain
96c778656a Improve launch performance on clusters that use dedicated nodes by instructing the orteds to use the same port as the HNP, thus allowing them to "rollup" their initial callback via the routed network. This substantially reduces the HNP bottleneck and the number of ports opened by the HNP.
Restore enable-static-ports option by default - the Cray will have to disable it to get around their library issues, but that's just a warning problem as opposed to blocking the build.

This commit was SVN r26606.
2012-06-15 10:15:07 +00:00
Ralph Castain
9506ac1617 Remove debug
This commit was SVN r26592.
2012-06-11 20:02:53 +00:00
Ralph Castain
269cb2b8d9 Some cleanup to remove calls to opal_progress when running with orte progress threads, and to ensure that all orte-related events are in the orte event base.
This commit was SVN r26591.
2012-06-11 19:59:53 +00:00
Ralph Castain
0442a807c0 Default the OOB to the "ud" component IFF the HNP finds itself on a node with a supported Infiniband device. Ensure that the daemons all pick the matching component by dictating the selection via mca param on the orted cmd line.
This commit was SVN r26582.
2012-06-08 01:23:08 +00:00
Ralph Castain
d6279fc971 Fix the debugger daemon launch support to fit the new state machine. Treat debugger daemons just like any other job, except that we map them only to nodes where an app process currently exists (as opposed to every node in the system). Trigger breakpoint and rank0 release only after the debugger daemons are in position.
This commit was SVN r26556.
2012-06-06 02:01:23 +00:00
Ralph Castain
9883f42caf Add missing commit
This commit was SVN r26501.
2012-05-28 02:20:20 +00:00
Ralph Castain
be6ed9c2df Allow partial use of allocations by specifying the max number of daemons (i.e., max VM size) for the job
This commit was SVN r26499.
2012-05-27 16:48:19 +00:00
Ralph Castain
83d69b6c95 Enable the ORTE progress thread for apps (not needed in the tools as they already continuously loop in the event lib). This appears to be working, at least for MPI apps that only use shared memory (a simple "hello"). More testing is required to identify where problems will occur - this is only intended to allow further development.
In order to use the progress thread, you must configure with:

--enable-orte-progress-threads --enable-event-thread-support

This commit was SVN r26457.
2012-05-20 15:14:43 +00:00
Jeff Squyres
dab7d36a81 Fix location of the default hostfile. Thanks to Götz Waschk for
identifying the problem.

This commit was SVN r26441.
2012-05-15 16:13:39 +00:00
Jeff Squyres
2ba10c37fe Per RFC, bring in the following changes:
* Remove paffinity, maffinity, and carto frameworks -- they've been
   wholly replaced by hwloc.
 * Move ompi_mpi_init() affinity-setting/checking code down to ORTE.
 * Update sm, smcuda, wv, and openib components to no longer use carto.
   Instead, use hwloc data.  There are still optimizations possible in
   the sm/smcuda BTLs (i.e., making multiple mpools).  Also, the old
   carto-based code found out how many NUMA nodes were ''available''
   -- not how many were used ''in this job''.  The new hwloc-using
   code computes the same value -- it was not updated to calculate how
   many NUMA nodes are used ''by this job.''
   * Note that I cannot compile the smcuda and wv BTLs -- I ''think''
     they're right, but they need to be verified by their owners.
 * The openib component now does a bunch of stuff to figure out where
   "near" OpenFabrics devices are.  '''THIS IS A CHANGE IN DEFAULT
   BEHAVIOR!!''' and still needs to be verified by OpenFabrics vendors
   (I do not have a NUMA machine with an OpenFabrics device that is a
   non-uniform distance from multiple different NUMA nodes).
 * Completely rewrite the OMPI_Affinity_str() routine from the
   "affinity" mpiext extension.  This extension now understands
   hyperthreads; the output format of it has changed a bit to reflect
   this new information.
 * Bunches of minor changes around the code base to update names/types
   from maffinity/paffinity-based names to hwloc-based names.
 * Add some helper functions into the hwloc base, mainly having to do
   with the fact that we have the hwloc data reporting ''all''
   topology information, but sometimes you really only want the
   (online | available) data.

This commit was SVN r26391.
2012-05-07 14:52:54 +00:00
Ralph Castain
b2f77bf08f Extend the iof by adding two new components to support map-reduce IO chaining. Add a mapreduce tool for running such applications.
Fix the state machine to support multiple jobs being simultaneously launched as this is not only required for mapreduce, but can happen under comm-spawn applications as well.

This commit was SVN r26380.
2012-05-02 21:00:22 +00:00
Ralph Castain
47a5e30095 Ensure debug output levels if we are debugging
This commit was SVN r26358.
2012-04-29 00:03:28 +00:00
Ralph Castain
f3e3704c9e Per request from Brian, enable mapping of stddiag output (output from opal_output calls) to stderr of the local process. This allows you to obtain that output in a local window (for example, when using xterm for each process) instead of having it automatically forwarded to mpirun. Turn this on automatically whenever someone uses the -xterm option, and to be set manually using the orte_map_stddiag_to_stderr mca param.
This commit was SVN r26352.
2012-04-27 14:39:34 +00:00
Ralph Castain
3b5b185c86 Don't double free timer events
This commit was SVN r26341.
2012-04-25 17:36:12 +00:00
Ralph Castain
ddfbde587f Change the default to "abort" the job when any process exits with a non-zero status. Add the required code to ensure the orted tells the HNP about the problem.
This commit was SVN r26270.
2012-04-13 21:19:46 +00:00
Ralph Castain
4d16790836 Fix collectives for jobs running across partial allocations
This commit was SVN r26267.
2012-04-13 00:38:47 +00:00
Ralph Castain
5d14fa7546 Fix mpi_abort, minimize error output.
This commit was SVN r26266.
2012-04-11 14:37:08 +00:00
Ralph Castain
9cd4c06488 Get things to build and run when --disable-orte is specified
This commit was SVN r26263.
2012-04-10 21:50:01 +00:00
Ralph Castain
14d5525fb1 Some minor cleanups. Get singletons working. Cleanup abort handling so it gets properly identified.
This commit was SVN r26261.
2012-04-10 19:08:54 +00:00
Ralph Castain
48de3a2501 Minor fixes so orte_progress_thread can work
This commit was SVN r26248.
2012-04-06 15:50:49 +00:00
Ralph Castain
bd8b4f7f1e Sorry for mid-day commit, but I had promised on the call to do this upon my return.
Roll in the ORTE state machine. Remove last traces of opal_sos. Remove UTK epoch code.

Please see the various emails about the state machine change for details. I'll send something out later with more info on the new arch.

This commit was SVN r26242.
2012-04-06 14:23:13 +00:00
Ralph Castain
ca3ff58c76 Ensure we get a non-zero exit status when we can't find the specified fork agent. Output a better error message, and ensure we don't multiply report the problem.
This commit was SVN r26191.
2012-03-24 00:49:38 +00:00
Josh Hursey
a595525366 Add the callers name to the 'comm failed' error message, so we know between which two peers the communication failed.
This commit was SVN r26117.
2012-03-08 21:55:19 +00:00
Ralph Castain
3d718863a8 Fix typo - thanks Pascal
This commit was SVN r26064.
2012-02-28 14:33:55 +00:00
Ralph Castain
d7d8a8cdf7 Some cleanup of the tmpdir session directory specifications. Remove the --tmpdir option from orterun as it was confusing. Create an orte_local_tmpdir_base mca param in its place. Clarify the role of the local vs remote vs global tmpdir base params, and ensure that you don't set conflicting options.
Remove the OMPI_PREFIX_ENV environmental variable as that was totally confusing as a way of setting a tmpdir base location.

This commit was SVN r25941.
2012-02-16 16:10:01 +00:00
Ralph Castain
3da1787c06 Allow there to be no default hostfile without generating an error
This commit was SVN r25930.
2012-02-15 04:16:05 +00:00
Ralph Castain
a5e4dc6803 In accordance with prior releases, we are supposed to default to looking at the openmpi-default-hostfile as a default hostfile. Restore that behavior, but ignore the file if it is empty. Allow the user to ignore any MCA param setting pointing to a default hostfile by setting the param to "none" (via cmd line or whatever) - this allows them to override a setting in the system default MCA param file.
This commit was SVN r25851.
2012-02-01 17:40:44 +00:00
Ralph Castain
11a37d3978 Fix the default
This commit was SVN r25733.
2012-01-17 21:09:27 +00:00
Ralph Castain
fd0d9f73c6 Make preload_binaries an MCA param so it can be set in the default MCA parameters for a system
This commit was SVN r25728.
2012-01-17 17:16:05 +00:00
Ralph Castain
ce7ddd0e10 Create the debugger attach fifo unless the user requests that we periodically poll insteaad.
This commit was SVN r25714.
2012-01-11 19:44:22 +00:00
Ralph Castain
bf103de66c My apologies for doing this outside of the usual time restrictions, but we need to get this in so we can make progress.
Move the ORTE-level debugger code back into orterun and out of the ORTE library to resolve symbol conflicts.

This commit was SVN r25713.
2012-01-11 15:53:09 +00:00
Ralph Castain
437c52d2bf Routing must be enabled by default
This commit was SVN r25657.
2011-12-15 17:13:52 +00:00
Ralph Castain
7510339725 Remove stale orte_vm_launch param. Add a param that allows users to specify envars to forward/set so they can do it in the MCA param file instead of only via mpirun cmd line.
This commit was SVN r25580.
2011-12-06 21:31:22 +00:00
Ralph Castain
df2f594aa8 Some cleanup associated with multiple app_contexts. Ensure nodes only get entered once into the map. Correctly handle bookmarks. Cleanup tracking of slots_inuse and correct detection of oversubscription.
Still need to resolve the ranking issue so it starts at the bookmark, but that will come next.

This commit was SVN r25574.
2011-12-05 22:01:08 +00:00
Ralph Castain
641e17f26c A better way of handling fqdn allocations. Prior method was wrong as it equated "node1" with "node10", which definitely caused problems.
Detect the addition of fqdn nodes in the allocation. If not found, then strip all incoming hostnames from daemons of any domain info when matching those names against the names in the node pool.

Leave some protection and "live" diagnostic output in place so we can continue to detect problems across all environments.

This commit was SVN r25557.
2011-12-01 14:24:43 +00:00
Ralph Castain
c56acf60ca Although we never really thought about it, we made an unconscious assumption in the mapper system - we assumed that the daemons would be placed on nodes in the order that the nodes appear in the allocation. In other words, we assumed that the launch environment would map processes in node order.
Turns out, this isn't necessarily true. The Cray, for example, launches processes in a toroidal pattern, thus causing the daemons to wind up somewhere other than what we thought. Other environments (e.g., slurm) are also capable of such behavior, depending upon the default mapping algorithm they are told to use.

Resolve this problem by making the daemon-to-node assignment in the affected environments when the daemon calls back and tells us what node it is on. Order the nodes in the mapping list so they are in daemon-vpid order as opposed to the order in which they show in the allocation. For environments that don't exhibit this mapping behavior (e.g., rsh), this won't have any impact.

Also, clean up the vm launch procedure a little bit so it more closely aligns with the state machine implementation that is coming, and remove some lingering "slave" code.

This commit was SVN r25551.
2011-11-30 19:58:24 +00:00
Ralph Castain
b475421c16 As promised, rationalize the rsh support. Remove rshbase and the base rsh support, centralizing all rsh support into the rsh component. Remove the "slave" launch support as that experiment is complete. Fix tree spawn and make that the default method for rsh launch, turning it "off" for qrsh as that system does not support tree spawn.
This commit was SVN r25507.
2011-11-26 02:33:05 +00:00
Ralph Castain
9b59d8de6f This is actually a much smaller commit than it appears at first glance - it just touches a lot of files. The --without-rte-support configuration option has never really been implemented completely. The option caused various objects not to be defined and conditionally compiled some base functions, but did nothing to prevent build of the component libraries. Unfortunately, since many of those components use objects covered by the option, it caused builds to break if those components were allowed to build.
Brian dealt with this in the past by creating platform files and using "no-build" to block the components. This was clunky, but acceptable when only one organization was using that option. However, that number has now expanded to at least two more locations.

Accordingly, make --without-rte-support actually work by adding appropriate configury to prevent components from building when they shouldn't. While doing so, remove two frameworks (db and rmcast) that are no longer used as ORCM comes to a close (besides, they belonged in ORCM now anyway). Do some minor cleanups along the way.

This commit was SVN r25497.
2011-11-22 21:24:35 +00:00
Ralph Castain
6310361532 At long last, the fabled revision to the affinity system has arrived. A more detailed explanation of how this all works will be presented here:
https://svn.open-mpi.org/trac/ompi/wiki/ProcessPlacement

The wiki page is incomplete at the moment, but I hope to complete it over the next few days. I will provide updates on the devel list. As the wiki page states, the default and most commonly used options remain unchanged (except as noted below). New, esoteric and complex options have been added, but unless you are a true masochist, you are unlikely to use many of them beyond perhaps an initial curiosity-motivated experimentation.

In a nutshell, this commit revamps the map/rank/bind procedure to take into account topology info on the compute nodes. I have, for the most part, preserved the default behaviors, with three notable exceptions:

1. I have at long last bowed my head in submission to the system admin's of managed clusters. For years, they have complained about our default of allowing users to oversubscribe nodes - i.e., to run more processes on a node than allocated slots. Accordingly, I have modified the default behavior: if you are running off of hostfile/dash-host allocated nodes, then the default is to allow oversubscription. If you are running off of RM-allocated nodes, then the default is to NOT allow oversubscription. Flags to override these behaviors are provided, so this only affects the default behavior.

2. both cpus/rank and stride have been removed. The latter was demanded by those who didn't understand the purpose behind it - and I agreed as the users who requested it are no longer using it. The former was removed temporarily pending implementation.

3. vm launch is now the sole method for starting OMPI. It was just too darned hard to maintain multiple launch procedures - maybe someday, provided someone can demonstrate a reason to do so.

As Jeff stated, it is impossible to fully test a change of this size. I have tested it on Linux and Mac, covering all the default and simple options, singletons, and comm_spawn. That said, I'm sure others will find problems, so I'll be watching MTT results until this stabilizes.

This commit was SVN r25476.
2011-11-15 03:40:11 +00:00
Ralph Castain
fcee46b063 Add an option for printing a diffable process map for testing mappers
This commit was SVN r25428.
2011-11-03 14:22:07 +00:00
Ralph Castain
891027c10d Cleanup error reports
This commit was SVN r25420.
2011-11-02 18:34:19 +00:00
Ralph Castain
d28dd55d33 Minimize the amount of topology info returned by the daemons. Most clusters, especially at scale, use the same node topology on every node, so there is no re
ason to return the topology from every daemon. Borrow a page from the --hetero-apps page and let users indicate that the node topology differs by adding a --
hetero-nodes option to mpirun. If the option is set, then every daemon returns topology info. If not set, then only daemon vpid=1 returns it.

We always want one daemon to return the topology as the head node is often different from the compute nodes. Having one daemon return the compute node topolo
gy allows us to detect any such difference. All compute nodes are then set to the same topology.

This commit was SVN r25408.
2011-11-01 18:43:10 +00:00
Ralph Castain
71ed8e3cd3 Bring back the local node's binding capabilities along with its topology. Clean up indentation.
This commit was SVN r25399.
2011-10-30 13:20:16 +00:00
Ralph Castain
648c85b41b Add a simple pattern mapper as an example of how to use the topology info to create desired mappings. Let the user specify a pattern based on resource types, and map that pattern across all available nodes as resources permit.
Don't automatically display the topology for each node when --display-devel-map is set as it can overwhelm the reader. Use a separate flag --display-topo to get it.

This commit was SVN r25396.
2011-10-29 15:12:45 +00:00
Ralph Castain
b44f8d4b28 Complete implementation of the ess.proc_get_locality API. Up to this point, the API was only capable of telling if the specified proc was sharing a node with you. However, the returned value was capable of telling you much more detailed info - e.g., if the proc shares a socket, a cache, or numa node. We just didn't have the data to provide that detail.
Use hwloc to obtain the cpuset for each process during mpi_init, and share that info in the modex. As it arrives, use a new opal_hwloc_base utility function to parse the value against the local proc's cpuset and determine where they overlap. Cache the value in the pmap object as it may be referenced multiple times.

Thus, the return value from orte_ess.proc_get_locality is a 16-bit bitmask that describes the resources being shared with you. This bitmask can be tested using the macros in opal/mca/paffinity/paffinity.h

Locality is available for all procs, whether launched via mpirun or directly with an external launcher such as slurm or aprun.

This commit was SVN r25331.
2011-10-19 20:18:14 +00:00
George Bosilca
749b63c09d Provide a generic fix for the termination issue instead of r25248. The
termination condition is to be checked at the daemon/HNP level not down
in the routing.

This commit was SVN r25313.

The following SVN revision numbers were found above:
  r25248 --> open-mpi/ompi@b42ccc89b8
2011-10-18 03:07:37 +00:00
Ralph Castain
f1a5a26ba0 Minor cleanups
This commit was SVN r25289.
2011-10-14 18:46:03 +00:00
Brian Barrett
98e98ce2c5 * opal_atomic_trylock is documented to return 0 if the lock was acquired,
1 otherwise.  It was doing the opposite, so this patch fixes the
  return values.  All uses (all in ORTE) used the actual return values,
  not the documented values, so fix them as well.

This commit was SVN r25257.
2011-10-11 18:43:45 +00:00
Ralph Castain
b42ccc89b8 Although this didn't solve the earlier termination problem, the code will be required once we get connection terminations properly detected. If a daemon (or HNP) is trying to terminate, then we need to check for termination conditions whenever a route is lost - when all child connections are gone, then we are free to finalize.
This commit was SVN r25248.
2011-10-10 21:41:49 +00:00
Ralph Castain
92c7372e20 Per the RFC from Jeff, move hwloc from opal/mca/common to its own static framework ala libevent. Have ORTE daemons collect the topology info at startup and, if --enable-hwloc-xml is set, send that info back to the HNP for later use. The HNP only retains unique topology "templates" to reduce memory footprint. Have the daemon include the local topology info in the nidmap buffer sent to each app so the apps don't all hammer the local system to discover it for themselves.
Remove the sysinfo framework as hwloc replaces that functionality.

This commit was SVN r25124.
2011-09-11 19:02:24 +00:00
George Bosilca
fc1184c41f Remove a warnings introduced by the epoch commit.
This commit was SVN r25094.
2011-08-26 23:36:52 +00:00
Wesley Bland
4e7ff0bd5e By popular demand the epoch code is now disabled by default.
To enable the epochs and the resilient orte code, use the configure flag:

--enable-resilient-orte

This will define both:

ORTE_ENABLE_EPOCH
ORTE_RESIL_ORTE

This commit was SVN r25093.
2011-08-26 22:16:14 +00:00