1
1

23 Коммитов

Автор SHA1 Сообщение Дата
Nathan Hjelm
deae9e52bf Merge pull request #1259 from kawashima-fj/pr/osc-sm-align
osc/sm: Fix a bus error on MPI_WIN_{POST,START}.
2016-03-15 09:13:38 -06:00
Gilles Gouaillardet
6eac6a8b00 osc/sm: create datafile into the per proc directory in order to make it unique per communicator
Thanks Peter Wind for the report
2016-02-03 10:12:37 +09:00
KAWASHIMA Takahiro
ad26899110 osc/sm: Fix a bus error on MPI_WIN_{POST,START}.
A bus error occurs in sm OSC under the following conditions.

- sparc64 or any other architectures which need strict alignment.
- `MPI_WIN_POST` or `MPI_WIN_START` is called for a window created
  by sm OSC.
- The communicator size is odd and greater than 3.

The lines 283-285 in current `ompi/mca/osc/sm/osc_sm_component.c` has
the following code.

```c
module->global_state = (ompi_osc_sm_global_state_t *) (module->segment_base);
module->node_states = (ompi_osc_sm_node_state_t *) (module->global_state + 1);
module->posts[0] = (uint64_t *) (module->node_states + comm_size);
```

The size of `ompi_osc_sm_node_state_t` is multiples of 4 but not
multiples of 8. So if `comm_size` is odd, `module->posts[0]` does
not aligned to 8. This causes a bus error when accessing
`module->posts[i][j]`.

This patch fixes the alignment of `module->posts[0]` by setting
`module->posts[0]` first.
2016-01-05 19:04:53 +09:00
Nathan Hjelm
248212276d osc/sm: fix remaining coverity issues
Fixes CID 1324870: Memory - illegal accesses (USE_AFTER_FREE)

Free osc module after calling destruct on the lock.

Fixes CID 1324868: Integer handling issues (OVERFLOW_BEFORE_WIDEN)
Fixes CID 1324867: Integer handling issues (OVERFLOW_BEFORE_WIDEN)

Explicitly cast to uint64_t to ensure the widen happens before an overflow
can occur.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-09-24 15:55:01 -06:00
Nathan Hjelm
903762e194 osc/sm: fix pscw synchronization
The osc/sm component was using a simple counter to determine if all
expected posts had arrived to start a PSCW access epoch. This is
incorrect as a post may arrive from a peer that isn't part of the
current start group. There are many ways this could have been fixed.
This commit adds an n^2 bitmap. When a process posts it sets a bit in
the bitmap associated with the access rank to indicate the post is
complete. The access rank checks for and clears the bits associated
with all the processes in the start group.

The bitmap requires comm_size ^ 2 bits of space. This should be
managable as most nodes have relatively small numbers of processes. If
this changes another algorigthm can be implemented.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-09-22 16:00:27 -06:00
Nathan Hjelm
ad3a2ef6cc silence warnings introduced by add_procs merge
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-09-10 16:33:52 -06:00
Nathan Hjelm
d8b0a6efda Remove use of ompi_comm_peer_lookup in osc/sm
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-09-10 08:55:54 -06:00
Gilles Gouaillardet
21b1e7f8c5 mpi conformance: fix prototypes
- MPI_Compare_and_swap
- MPI_Fetch_and_op
- MPI_Raccumulate
- MPI_Win_detach

Thanks to Michael Knobloch and Takahiro Kawashima for bringing this
to our attention
2015-08-31 10:34:05 +09:00
Ralph Castain
869041f770 Purge whitespace from the repo 2015-06-23 20:59:57 -07:00
Nathan Hjelm
df75d0382f ompi: use C99 subobject naming for component initialization
This commit helps future-proof ompi components by initializing each
component member by name.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-04-18 10:29:58 -06:00
Nathan Hjelm
5f1254d710 Update code base to use the new opal_free_list_t
Use of the old ompi_free_list_t and ompi_free_list_item_t is
deprecated. These classes will be removed in a future commit.

This commit updates the entire code base to use opal_free_list_t and
opal_free_list_item_t.

Notes:

OMPI_FREE_LIST_*_MT -> opal_free_list_* (uses opal_using_threads ())

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-02-24 10:05:45 -07:00
Jeff Squyres
b70fa3e2cb osc_sm: Fix valgrind warning
Many thanks to Lisandro Dalcin for contributing this patch.

Fixes open-mpi/ompi#202.
2015-02-24 03:36:17 -08:00
Ralph Castain
eb95d6f892 ompi_info_get_bool returns "success" if the value isn't found, setting "flag" to false, but doesn't set the value of the param itself. So if you don't specify "blocking_fence" in MPI_Info, then the "blocking_fence" flag wasn't being set.
Initialize the blocking_fence flag to false as the code logic indicates that it should only be set if someone provides that flag.

Thanks to Lisandro Dalcin for reporting it

cmr=v1.8.4:reviewer=hjelmn

This commit was SVN r32812.
2014-09-29 17:21:28 +00:00
Ralph Castain
61bf7af9d2 Per Paul Hargrove's suggestion, create an opal_pagesize function to abstract the various ways of obtaining that value. Rather than creating a separate file for only that one function, put it in a convenient place that is at least somewhat related.
Refs trac:4826

This commit was SVN r32407.

The following Trac tickets were found above:
  Ticket 4826 --> https://svn.open-mpi.org/trac/ompi/ticket/4826
2014-08-02 18:38:16 +00:00
Ralph Castain
552c9ca5a0 George did the work and deserves all the credit for it. Ralph did the merge, and deserves whatever blame results from errors in it :-)
WHAT:    Open our low-level communication infrastructure by moving all necessary components (btl/rcache/allocator/mpool) down in OPAL

All the components required for inter-process communications are currently deeply integrated in the OMPI layer. Several groups/institutions have express interest in having a more generic communication infrastructure, without all the OMPI layer dependencies.  This communication layer should be made available at a different software level, available to all layers in the Open MPI software stack. As an example, our ORTE layer could replace the current OOB and instead use the BTL directly, gaining access to more reactive network interfaces than TCP.  Similarly, external software libraries could take advantage of our highly optimized AM (active message) communication layer for their own purpose.  UTK with support from Sandia, developped a version of Open MPI where the entire communication infrastucture has been moved down to OPAL (btl/rcache/allocator/mpool). Most of the moved components have been updated to match the new schema, with few exceptions (mainly BTLs where I have no way of compiling/testing them). Thus, the completion of this RFC is tied to being able to completing this move for all BTLs. For this we need help from the rest of the Open MPI community, especially those supporting some of the BTLs.  A non-exhaustive list of BTLs that qualify here is: mx, portals4, scif, udapl, ugni, usnic.

This commit was SVN r32317.
2014-07-26 00:47:28 +00:00
Nathan Hjelm
41f0059f1e osc/sm: use an unsigned long when calculating the total segment size
Brad correctly pointed out that the total window size should not be an
int. Changed it to an unsigned long.

cmr=v1.8.2:reviewer=bbenton

This commit was SVN r32010.
2014-06-17 04:33:43 +00:00
Nathan Hjelm
6ec9c6c422 osc/sm: return ompi_request_empty for all request ops
Only one field is valid for RMA requests: MPI_ERROR. This field is set
to the correct value in ompi_request_empty so there is no reason to
allocate and keep track of osc/sm requests because they are always
complete on return. Since we are no longer using the osc/sm request
structure or free list they are now removed.

Closes trac:4723

Tracking this issue with the CMR. Brad, can you verify the issue is indeed fixed.

cmr=v1.8.2:reviewer=bbenton

This commit was SVN r32009.

The following Trac tickets were found above:
  Ticket 4723 --> https://svn.open-mpi.org/trac/ompi/ticket/4723
2014-06-17 04:27:02 +00:00
Nathan Hjelm
545d5daced osc: add missing MPI_ERR_RMA_SHARED error code and internal equivalent
cmr=v1.8:reviewer=jsquyres

This commit was SVN r31259.
2014-03-27 20:06:43 +00:00
Nathan Hjelm
925af4706c osc/sm: fix bugs in window initialization and finalization
Fixed two bugs:

 - Use module->comm NOT comm to get the CID for the shared memory backing
   file. This fixes the case where there are multiple shared memory windows
   at the same time.

 - Remember to unlink the shared memory backing file.

Refs trac:4438

cmr=v1.8:reviewer=jsquyres

This commit was SVN r31227.

The following Trac tickets were found above:
  Ticket 4438 --> https://svn.open-mpi.org/trac/ompi/ticket/4438
2014-03-26 15:52:51 +00:00
Nathan Hjelm
9e92c5be53 osc/sm: check for pthread_condattr_setpshared and pthread_mutexattr_setpshared. fall
back on barrier if either function doesn't exist.

cmr=v1.7.5:reviewer=jsquyres

This commit was SVN r30911.
2014-03-03 17:09:09 +00:00
Tom Naughton
8793560bde + fix abstraction violation (ORTE_process_info => OMPI_process_info)
This commit was SVN r30883.
2014-02-27 23:59:46 +00:00
Nathan Hjelm
30b61a3333 Fix a number of issues in the new one sided code.
- Fix several typos is osc/rdma.

 - Fix a locking issue in osc/sm that was caused by an incorrect
   assumption about the semantics of opal_atomic_add_32.

 - Always unlock the accumulation lock in osc/sm.

 - The base of a processes shared memory window should be NULL if
   the size is zero. Fixed.

cmr=v1.7.5:ticket=trac:4304

This commit was SVN r30853.

The following Trac tickets were found above:
  Ticket 4304 --> https://svn.open-mpi.org/trac/ompi/ticket/4304
2014-02-26 15:33:18 +00:00
Ralph Castain
49d938de29 Merge one-sided updates to the trunk - written by Brian Barrett and Nathan Hjelmn
cmr=v1.7.5:reviewer=hjelmn:subject=Update one-sided to MPI-3

This commit was SVN r30816.
2014-02-25 17:36:43 +00:00