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28636 Коммитов

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Mark Allen
93fefc4d70 fix info-subscribe to use snprintf() and warn on long key
This checkin mainly concerns our internal info keys that are registering
for callbacks via opal_infosubscribe_subscribe(). Those keys need to have
an extra __IN_<key>/val stored to preserve their pre-callback value. So
that means our internal keys are limited to 5 chars shorter than the usual
key length limit.

The code previously would have been silently inactive if a large key happened
to come in, now it warns and also uses snprintf() to avoid compiler warnings.

I'm also making the top-level MPI_Info_set warn if the user uses our reserved
"__IN_" prefix. I had wanted the feature to be more invisible than that, but
it would require a more sophisticated approach to change that.

Signed-off-by: Mark Allen <markalle@us.ibm.com>
2018-06-01 18:31:32 -04:00
Thananon Patinyasakdikul
6efb8069ec new btl/ofi: RDMA only btl using libfabric.
This commit added new transport layer to be used with osc rdma module.
This BTL provides put, get, atomic and fetch atomic operations. It can
be used with multiple hardware vendors as long as they have their
provider under Libfabric and have the right capabilities.

Signed-off-by: Thananon Patinyasakdikul <thananon.patinyasakdikul@intel.com>
2018-06-01 15:22:04 -07:00
Jeff Squyres
38ed70de6f ompi_mpi_finalize: remove some dead code
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-06-01 13:37:20 -07:00
Jeff Squyres
35438ae9b5 mpi/finalized: revamp INITIALIZED/FINALIZED
Per MPI-3.1:8.7.1 p361:11-13, it's valid for MPI_FINALIZED to be
invoked during an attribute destruction callback (e.g., during the
destruction of keyvals on MPI_COMM_SELF during the very beginning of
MPI_FINALIZE).  In such cases, MPI_FINALIZED must return "false".

Prior to this commit, we hung in FINALIZED if it were invoked during
a COMM_SELF attribute destruction callback in FINALIZE.  See
https://github.com/open-mpi/ompi/issues/5084.

This commit converts the MPI_INITIALIZED / MPI_FINALIZED
infrastructure to use a single enum (ompi_mpi_state, set atomically)
to represent the state of MPI:

- not initialized
- init started
- init completed
- finalize started
- finalize past COMM_SELF destruction
- finalize completed

The "finalize past COMM_SELF destruction" state is what allows us to
return "false" from MPI_FINALIZED before COMM_SELF has been fully
destroyed / all attribute callbacks have been invoked.

Since this state is checked at nearly every MPI API call (to see if
we're outside of the INIT/FINALIZE epoch), care was taken to use
atomics to *set* the ompi_mpi_state value in ompi_mpi_init() and
ompi_mpi_finalize(), but performance-critical code paths can simply
read the variable without needing to use a slow call to an
opal_atomic_*() function.

Thanks to @AndrewGaspar for reporting the issue.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-06-01 13:36:29 -07:00
Edgar Gabriel
0d66e02179
Merge pull request #5211 from edgargabriel/pr/dynamic_gen2_large_offset_Fix
fcoll/dynamic_gen2: ensure some variables can hold an intermediate value
2018-06-01 08:39:36 -05:00
Edgar Gabriel
52bd606294 fcoll/dynamic_gen2: make sure that intermediate variables can hold the offset
for very large offsets, ome ariables used in the fcoll/dynamic_gen2
code base were under certain circumstances not large enough to hold
intermediate values. This issue was more detected in the vulcan component
but could happen in the dynamic_gen2 component as well.

Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
2018-06-01 06:53:38 -05:00
Nathan Hjelm
7ac3797a98 README: remove note about ARM/power hangs
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-05-31 19:45:19 -06:00
Nathan Hjelm
f8dbf62879 opal/asm: change ll/sc atomics to macros
This commit fixes a hang that occurs with debug builds of Open MPI on
aarch64 and power/powerpc systems. When the ll/sc atomics are inline
functions the compiler emits load/store instructions for the function
arguments with -O0. These extra load/store arguments can cause the ll
reservation to be cancelled causing live-lock.

Note that we did attempt to fix this with always_inline but the extra
instructions are stil emitted by the compiler (gcc). There may be
another fix but this has been tested and is working well.

References #3697. Close when applied to v3.0.x and v3.1.x.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-05-31 19:45:19 -06:00
Nathan Hjelm
50a9508e0f
Merge pull request #5210 from ggouaillardet/topic/mpifh_compat
fortran/mpif-h: fix MPI1 compatibility Makefile
2018-05-31 19:44:14 -06:00
Gilles Gouaillardet
9f7586465d fortran/mpif-h: fix MPI1 compatibility Makefile
appends MPI1 compatible source files instead of redefining all the source files
fix a typo from open-mpi/ompi@89da9651bb

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-06-01 09:52:22 +09:00
Nathan Hjelm
b323655809 mpi: make C++ bindings compile when MPI-1 compat is disabled
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-05-31 09:44:19 -06:00
Nathan Hjelm
74563d22a0 test/ddt_lib: remove UB/LB tests
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-05-31 09:44:19 -06:00
Nathan Hjelm
89da9651bb ompi: disable functions removed from MPI-3.0 by default
This commit adds a new configure option: --enable-mpi1-compat. Without
this option we will no longer provide APIs, typedefs, and defines that
were removed from the standard in MPI-3.0. This option will exist for
one major release (Open MPI v4.x.x) and then the option and associated
code will be removed in Open MPI v5.x.x. Open MPI has already
internally prepared for this change. Please prepare your codes
accordingly.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-05-31 09:44:19 -06:00
Yossi Itigin
f5631e546d
Merge pull request #5187 from hoopoepg/topic/amo-non-blocking-ucp
MCA/UCX: atomic add/swap are moved to new UCX atomic API
2018-05-31 13:48:05 +03:00
KAWASHIMA Takahiro
04b509b2d2
Merge pull request #5207 from t-kurita/pr/java-doc-descriptions
java: Improve descriptions of `javadoc`
2018-05-31 16:12:21 +09:00
Kurita, Takehiro
11ae771b82 java: Improve descriptions of javadoc
- Improve descriptions
- Fix some typos
- Remove MPI-1 functions and replace them with MPI-2 functions

Signed-off-by: Kurita, Takehiro <fj6370fp@aa.jp.fujitsu.com>
2018-05-31 15:02:35 +09:00
Jeff Squyres
01e26459d2
Merge pull request #5203 from jsquyres/pr/warnings-stomps
Minor compiler warning stomps
2018-05-30 15:57:05 -04:00
Jeff Squyres
fb0473acb5 pmix3x: compiler warning stomp
This fix was already included in pmix upstream (https://github.com/pmix/pmix/commit/fb7af8af2).

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-05-30 10:14:37 -07:00
Jeff Squyres
dec247d96e opal/datatype: minor compiler warning stomp
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-05-30 10:08:19 -07:00
Jeff Squyres
25f2d02c61 fcoll/dynamic_gen2: minor compiler warning stomp
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-05-30 10:08:19 -07:00
Jeff Squyres
2dce549df2 ompi/debuggers: stomp a compiler warning in dlopen_test.c
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-05-30 10:08:14 -07:00
Sergey Oblomov
319bb376f9 MCA/UCX: branch optimization in cswap call
Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2018-05-30 07:14:43 +03:00
Nathan Hjelm
e9de42544e osc/sm: add support for controlling location of backing store
This commit adds a new MCA variable to set the location of the backing
store: osc_sm_backing_directory. The default on Linux has been
changed to use /dev/shm to improve performance in cases where /tmp is
not a tmpfs.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-05-29 21:44:01 -06:00
Nathan Hjelm
d0d59b1d7d osc/rdma: add support for controlling location of backing store
This commit adds a new MCA variable to set the location of the backing
store: osc_rdma_backing_directory. The default on Linux has been
changed to use /dev/shm to improve performance in cases where /tmp is
not a tmpfs.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-05-29 21:43:33 -06:00
Sergey Oblomov
daad71f036 MCA/UCX: switch/case optimization
Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2018-05-29 22:33:33 +03:00
Jeff Squyres
2e8ab41ba5
Merge pull request #5200 from jsquyres/pr/disable-osc-pt2pt-for-thread-multiple
osc/pt2pt: disable when THREAD_MULITPLE
2018-05-29 15:33:15 -04:00
Sergey Oblomov
6be4066e23 MCA/UCX: cswap call if updated to non-blocking API
- minor fixes

Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2018-05-29 20:07:51 +03:00
Sergey Oblomov
b668e19cd1 Merge remote-tracking branch 'wg/master' into topic/amo-non-blocking-ucp
Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2018-05-29 19:08:48 +03:00
Howard Pritchard
5b7c866f59 osc/pt2pt: disable when THREAD_MULTIPLE.
Per discussion at
https://github.com/open-mpi/ompi/issues/2614#issuecomment-392815654,
do not allow for selection of the OSC PT2PT when creating an MPI RMA
window when THREAD_MULTIPLE is active.  Print a helpful message and
return a not-supported error.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>

(cherry picked from commit d0ffd660841623c02d1dfa3151e7f7afd3327698)
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-05-29 08:59:53 -07:00
bosilca
4ebed21b6d
Merge pull request #4670 from ggouaillardet/topic/opal_bitmap
opal/bitmap: fix opal_bitmap_set_bit()
2018-05-29 10:50:21 -04:00
Yossi Itigin
976cd5e307
Merge pull request #5186 from hoopoepg/topic/ucx-amo-error-msg
MCA/UCX: fixed error messages for incorrect msg size
2018-05-29 15:54:02 +03:00
Sergey Oblomov
0c3ed93ef0 MCA/UCX: added opal progress call to wait request routine
- added opal_progress call to wait function to avoid
  possible [dead]lock issues
- wait call is declared as inline
- minor fixes

Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2018-05-29 11:34:40 +03:00
bosilca
9adc38c963
Merge pull request #5197 from mkurnosov/reduce-scatter-block-butterfly
coll: reduce_scatter_block: add butterfly algorithm
2018-05-27 18:12:27 -04:00
Yossi Itigin
705c8a7b9b
Merge pull request #5198 from brminich/shmem_fence
OSHMEM/SMPL/UCX: Add real fence support
2018-05-27 11:25:42 +03:00
Mikhail Kurnosov
28d5837dd9 coll: reduce_scatter_block: add butterfly algorithm
Implements butterfly algorithm for MPI_Reduce_scatter_block.
The algorithm can be used both by commutative and non-commutative
operations, for power-of-two and non-power-of-two number of processes.

Signed-off-by: Mikhail Kurnosov <mkurnosov@gmail.com>
2018-05-27 14:17:41 +07:00
Artem Polyakov
66e774d959
Merge pull request #4638 from karasevb/oshmem/spec_1.3/c11
oshmem: remove `shmem_put/get` when not the C11 case in accordance with the spec v1.3
2018-05-26 17:29:51 -07:00
Jeff Squyres
731fcc86cb
Merge pull request #5188 from sjeaugey/libcuda_warning
cuda: add option to remove warning about missing libcuda.
2018-05-26 15:53:01 -04:00
Mikhail Brinskii
8e9d401938 OSHMEM/SMPL/UCX: Add real fence support
+ Add quiet method to SPML, so it can have different implementation with
fence.
+ Use ucp_worker_fence for spml_fence method of UCX SPML

Signed-off-by: Mikhail Brinskii <mikhailb@mellanox.com>
2018-05-25 22:43:06 +03:00
Brian Barrett
9fff40647d oshmem: disable if no spmls build
This patch disables the oshmem layer if there are no SPMLs that
will build.  With the limited set of SPMLs available to support
oshmem, many builds end up installing an oshmem library that we
know will not work.  There has been a bit of customer confusion
over oshmem, hopefully this will lead customers in the right
direction.

Signed-off-by: Brian Barrett <bbarrett@amazon.com>
2018-05-25 08:48:50 -07:00
Brian Barrett
22bdf85299 dist: Add infrastructre for prjects to not build
Two related changes to allow projects to not build based on
configure test results, as opposed to only reacting to
user configure options today.  Use case is disabling a project
like oshmem because no communication channels can be built.

First, Move PROJECT_* AM_CONDITIONALs from the top of configure to
the bottom, so that we can change the results during configure.
Second, add a DIST_SUBDIRS to Makefile.am (and populate it in
opal_mca) so that "make dist" will work even when a project is
disabled.

Signed-off-by: Brian Barrett <bbarrett@amazon.com>
2018-05-25 08:48:50 -07:00
Brian Barrett
70b154f7ff oshmem: Update config code to match OMPI usage
enable_oshmem holds the result of a customer decision and, like
most user options, can have the values "yes" (user wants us to
build feature), "no" (user wants us not to build feature),
"" (user wants us to figure it out), and "<something>" (user
wants us to build feature, with <something> turned on).

This change updates oshmem to not lose this data by not overwriting
enable_oshmem with a yes/no and leaving the original customer
intent in place.  Aside from fixing one bug (below) there are no
customer visible changes in this patch, but it makes it possible
to do the right thing in the upcoming work to allow oshmem to be
disabled based on test results.

There was a cosmetic bug in the existing code where specifying
a feature argument (like --enable-oshmem=awesome) would result
in the "checking if want oshmem" test reporting no, but oshmem
being built anyway.  With this cleanup, the "checking if want
oshmem" test, the final output summary, and what actually happens
will all match.

Signed-off-by: Brian Barrett <bbarrett@amazon.com>
2018-05-25 08:48:50 -07:00
Edgar Gabriel
09f73f1cd5
Merge pull request #5194 from edgargabriel/pr/condition-fix
io/ompio: fix an erroneous condition when selecting aggregator selection algorithm
2018-05-24 19:18:37 -05:00
Sylvain Jeaugey
4eb75623ef cuda: add option to remove warning about missing libcuda.
Signed-off-by: Sylvain Jeaugey <sjeaugey@nvidia.com>
2018-05-24 14:56:46 -07:00
Edgar Gabriel
6b03cee7f1 io/ompio: erroneous condition in selecting aggregator selection logic
fix the logic in the decision which aggregator selection algorithm
to use.

Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
2018-05-24 15:52:19 -05:00
Brice Goglin
847f2e9933 opal/hwloc: remove now unused available field from opal_hwloc_obj_data_t
Signed-off-by: Brice Goglin <Brice.Goglin@inria.fr>
2018-05-24 11:53:07 +02:00
Brice Goglin
b260600450 opal/hwloc: simplify df_search() and make it work with hwloc 2.x NUMA nodes
Don't do a recursive search (hence no need for *idx anymore).
Find the level depth, to hide cache-issues first.
Then iterate over that level to find the objects we want.

Signed-off-by: Brice Goglin <Brice.Goglin@inria.fr>
2018-05-24 11:53:07 +02:00
Brice Goglin
a06fc74664 opal/hwloc: remove an obsolete comment about offlines CPUs etc
Only online/available objects are enabled in OMPI now.

Signed-off-by: Brice Goglin <Brice.Goglin@inria.fr>
2018-05-24 11:53:07 +02:00
Brice Goglin
369a7ea279 opal/hwloc: remove df_search_cores and fix things for hwloc 2.x NUMA nodes
Just iterate over cores inside the given object cpuset.

Signed-off-by: Brice Goglin <Brice.Goglin@inria.fr>
2018-05-24 11:53:07 +02:00
Brice Goglin
0cd0c12111 opal/hwloc: remove min_bound() functions
df_search_min_bound() would need to be fixed for hwloc 2.0,
but it's only used in opal_hwloc_base_find_min_bound_target_under_obj()
which isn't used anymore. So just remove all of them.

Signed-off-by: Brice Goglin <Brice.Goglin@inria.fr>
2018-05-24 11:53:07 +02:00
Brice Goglin
c4dffa1d0f rmaps: simplify the lookup for the binding object and fix for hwloc 2.0
Don't bother doing a lookup upwards or downwards for the target object type.
Just use the target depth, iterate over the level until we find the min_bound
object that intersects the locale cpuset.

Signed-off-by: Brice Goglin <Brice.Goglin@inria.fr>
2018-05-24 11:53:07 +02:00