ports/openmpi
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rhc54
309c967946 Merge pull request #2536 from ggouaillardet/topic/ess_base_update_routing_plan 
ess/base: invoke orte_routed.update_routing_plan() earlier
 2016-12-07 07:20:20 -08:00
Gilles Gouaillardet
123036dbf8 ess/base: invoke orte_routed.update_routing_plan() earlier 
fix an issue that can be evidenced with two nodes
n0$ mpirun --host n1:1 --mca oob_tcp_static_ipv4_ports 1234 -np 1 --mca routed radix --mca oob tcp true

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-12-07 17:19:25 +09:00
Ralph Castain
fbed2d794a Update to latest PMIx master + PTL branch 
Update the usock component to disable it

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2016-12-06 20:47:44 -08:00
rhc54
f95f11d285 Merge pull request #2534 from rhc54/topic/pmixconfig 
Update pmix check headers to support Open BSD
 2016-12-06 20:46:34 -08:00
Gilles Gouaillardet
1635c293e6 Merge pull request #2522 from ggouaillardet/topic/misc_asm_fixes 
Topic/misc asm fixes
 2016-12-07 13:31:49 +09:00
Ralph Castain
d51821cbc7 Update pmix check headers to support Open BSD 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2016-12-06 19:37:06 -08:00
rhc54
c2f57581df Merge pull request #2527 from rhc54/topic/sig2 
Update signal handling to introduce a pause between SIGCONT and SIGT…
 2016-12-06 14:02:25 -08:00
Ralph Castain
85a634926b Update signal handling to introduce a pause between SIGCONT and SIGTERM, followed by another pause before SIGKILL. Do this within the odls/kill_local_procs function while we know we are blocked in an event, and before the daemon shuts down the event progress loop 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2016-12-06 12:34:42 -08:00
alex-mikheev
a3e4c33f0e Merge pull request #2524 from jladd-mlnx/topic/shmemx_h-master 
Remove shmemx.h from shmem.h. Add shmem.h to shmemx.h
 2016-12-06 09:49:34 +02:00
Gilles Gouaillardet
299a6f8d7c configury: auto-detect armhf and armel architectures on Debian 
Thanks Alastair McKinstry for the patch

Fixes open-mpi/ompi#2514

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-12-06 14:49:54 +09:00
Gilles Gouaillardet
596613c0aa configury: add support for x32 architecture 
Thanks Alastair McKinstry for the patch

Fixes open-mpi/ompi#2515

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-12-06 14:49:37 +09:00
Gilles Gouaillardet
c8b51a2d3b configury: remove some dead code 
perl is now mandatory to build Open MPI,
so there is no need to check for it

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-12-06 14:49:37 +09:00
Joshua Ladd
dc6f4a0feb Remove shmemx.h from shmem.h. Add shmem.h to shmemx.h 
Fixes #2483
Signed-off-by: Joshua Ladd <joshual@mellanox.com>
 2016-12-06 06:42:26 +02:00
Joshua Ladd
59f40e7cc5 Merge pull request #2500 from vspetrov/hcoll_ctx_free_detection 
Detect hcoll_context_free at config
 2016-12-05 22:39:40 -05:00
rhc54
7af49eb735 Merge pull request #2521 from rhc54/topic/rml 
Resolve a duplicate symbol issue when the rml/ofi component is enabled
 2016-12-05 15:33:31 -08:00
Ralph Castain
d8f262e39b Resolve a duplicate symbol issue when the rml/ofi component is enabled 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2016-12-05 13:41:38 -08:00
Jeff Squyres
40d94fdc5a Merge pull request #2422 from edgargabriel/pr/cycle-buf-default-val 
io/ompio: change the default value of mca parameter
 2016-12-05 15:33:52 -05:00
Ralph Castain
144a9d267b Update the purge-tab-indents.pl script to avoid resetting permissions 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2016-12-05 09:49:58 -08:00
Gilles Gouaillardet
5bb3efdc74 configury: check the existence of perl 
perl is required by ompi/mpi/man/make_manpage.pl, that is even used in opal.
so simply aborts at configure time if perl is not available

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-12-05 10:31:51 +09:00
Ralph Castain
f91f8ce494 Protect against NULL param 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2016-12-03 21:19:32 -08:00
Ralph Castain
f633d5c1b1 Initialize var 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2016-12-03 21:08:45 -08:00
rhc54
2a01cc853a Merge pull request #2512 from rhc54/topic/dyn 
Allow a PMIx tool to spawn a job
 2016-12-03 18:15:19 -08:00
Ralph Castain
79cde184ad Allow a PMIx tool to spawn a job 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2016-12-03 16:00:47 -08:00
rhc54
003f7d308f Merge pull request #2504 from hppritcha/topic/fix_pmix_base_help_file 
pmix: Fix pmix base help file.
 2016-12-03 11:57:07 -08:00
rhc54
cda9bd3dd9 Merge pull request #2511 from rhc54/topic/nohang 
Avoid hanging in show_help if PMIx was unable to initialize
 2016-12-03 11:27:55 -08:00
rhc54
fa04ba9ef1 Merge pull request #2510 from rhc54/topic/cleanup 
Fix the session directory cleanup - only remove the jobfam session di…
 2016-12-03 10:53:35 -08:00
Ralph Castain
a43fae74a5 Avoid hanging in show_help if PMIx was unable to initialize 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2016-12-03 10:12:58 -08:00
Ralph Castain
af9a55ccf1 Fix the session directory cleanup - only remove the jobfam session dir level if we are the local daemon and are cleaning up our own session directory. 
Update the scaling test to run more trials and report the options being tested each time

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2016-12-03 09:59:18 -08:00
rhc54
b030f9acc0 Merge pull request #2506 from rhc54/topic/pmixext 
Now that PMIx has settled on its release strategy and numbering, update the OPAL pmix framework to track
 2016-12-03 07:58:42 -08:00
Jeff Squyres
6319332258 Merge pull request #2491 from OMGtechy/master 
Swapped use of fprintf for opal_output_verbose
 2016-12-03 07:32:03 -05:00
Ralph Castain
a4e3f615e3 Fix executable modes of pmix config scripts 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2016-12-02 20:50:59 -08:00
Ralph Castain
342dbfcf4e Update 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2016-12-02 20:33:03 -08:00
Ralph Castain
8e64382edf Update to correct tarball 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2016-12-02 19:16:07 -08:00
Ralph Castain
1a0bccb536 Now that PMIx has settled on its release strategy and numbering, update the OPAL pmix framework to track 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2016-12-02 15:44:43 -08:00
Howard Pritchard
3049848731 Fix pmix base help file. 
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2016-12-02 15:03:22 -06:00
Valentin Petrov
e13e264185 Detect hcoll_context_free at config 
Needed for better flexibility with versioning

Signed-off-by: Valentin Petrov <valentinp@mellanox.com>
 2016-12-02 22:09:20 +02:00
rhc54
0366f3aedc Merge pull request #2497 from rhc54/topic/signal 
Per discussion on email thread, restore placement of child procs in t…
 2016-12-02 08:18:45 -08:00
Jeff Squyres
1504ffb18d ompi_file_delete: output a better error message 
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2016-12-02 11:08:04 -05:00
Ralph Castain
88313debc2 Per discussion on email thread, restore placement of child procs in their own process group so that any signal sent to one of our children is automatically propagated to any child process they might have spawned. 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2016-12-02 03:36:22 -08:00
rhc54
b2e36f0824 Merge pull request #2493 from rhc54/topic/pmix 
Update to latest PMIx master
 2016-12-01 16:02:25 -08:00
rhc54
88fbdf82c9 Merge pull request #2492 from rhc54/topic/connect 
Fix IOF when outputing to files - the remote orteds were failing to o…
 2016-12-01 16:00:13 -08:00
Ralph Castain
6041467df0 Update to latest PMIx master 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2016-12-01 14:47:44 -08:00
Ralph Castain
dd491db21f Fix IOF when outputing to files - the remote orteds were failing to output stdout/err from their procs. 
Silence a warning in orted_submit

Protect against a free'd value in an error path when forming oob tcp connections

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2016-12-01 14:12:47 -08:00
Joshua Gerrard
d5a45bc12e Swapped use of fprintf for opal_output_verbose 
Signed-off-by: Joshua Gerrard <enquiries@joshuagerrard.com>
 2016-12-01 19:56:06 +00:00
Gilles Gouaillardet
3a76a78bff btl/openib: plug a memory leak in btl_openib_register_mca_params() 
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-12-01 14:24:30 +09:00
Gilles Gouaillardet
c9aeccb84e opal/if: open the if framework once in opal_init_util 
the if framework is no more open in opal_if*, which plugs
several memory leaks

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-12-01 14:24:30 +09:00
Gilles Gouaillardet
188b9668e4 ompi/attribute: plug a memory leak in set_value() 
OBJ_RELEASE() the previous attribute value if any

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-12-01 14:24:30 +09:00
Gilles Gouaillardet
d94e8c97a0 ompi/runtime: release F90 types in ompi_mpi_finalize() 
F90 types cannot be freed by the enduser as specified by the standard.
but since they are ompi_datatype_dup'ed from predefined datatypes,
they have to be explicitly free'd at finalize time in order
to avoid a memory leak.

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-12-01 14:24:30 +09:00
Gilles Gouaillardet
45732fd764 hwloc/base: fix a memory leak in buffer_cleanup() 
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-12-01 14:24:29 +09:00
Gilles Gouaillardet
2739346a18 opal: invoke mca_base_close() in opal_finalize_util() 
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-12-01 14:24:29 +09:00