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4060 Коммитов

Автор SHA1 Сообщение Дата
Ralph Castain
6e68d758b9 Cleanup some valgrind complaints about jumps with uninitialized values. Fix a few IOF issues reported by Mark Santcroos when submitting jobs from tools. Add the ability to pass directives to the --output-filename option that tell ORTE to (a) not include the jobid in the path to the output files, and (b) not to copy the output to the tool (i.e., just store it in the files).
ck

Remove stale debug

Fix a segfault if no subscribers are present
2016-02-18 16:30:37 -08:00
Nathan Hjelm
371df45bf8 btl/openib: fix locking bugs with XRC ib_addr lock
This bug fixes two issue with the ib_addr lock:

 - The ib_addr lock must always be obtained regardless of
   opal_using_threads() as the CPC is run in a seperate thread.

 - The ib_addr lock is held in mca_btl_openib_endpoint_connected when
   calling back into the CPC start_connect on any pending
   connections. This will attempt to obtain the ib_addr lock
   again. Since this is not a performance-critical part of the code
   the lock has been changed to be recursive.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-02-18 15:55:34 -07:00
Nathan Hjelm
4dc73d7765 btl/openib: XRC fix bug that could cause an invalid SRQ# to be used
This commit fixes a bug that occurs when attempting a get or put
operation on an endpoint that is not already connected. In this case
the remote_srqn may be set to an invalid value as the rem_srqs array
on the endpoint is not populated. This commit moves the usage of the
rem_srqs array to the internal put/get functions where it is
guaranteed this array is populated.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-02-18 15:44:29 -07:00
Ralph Castain
60a7bc2e50 Enable the PMIx notification callback system. This currently is only supported by the pmix120 component, which is not selected by default. All other components will ignore error registration requests, and thus do not support debugger attach when launched via mpirun. Note that direct launched applications will support such attachment, but may not do so in a scalable fashion.
Fixes ##1225
2016-02-18 09:29:12 -08:00
rhc54
2745610eb7 Merge pull request #1377 from rhc54/topic/pmix
Plug a leak in the PMIx subsystem
2016-02-17 20:05:45 -08:00
Ralph Castain
efb0eff43e Plug a leak in the PMIx subsystem 2016-02-17 19:00:36 -08:00
rhc54
dc4d3edc06 Merge pull request #1372 from rhc54/topic/sing
Further enhance the support for Singularity containers.
2016-02-17 16:39:23 -08:00
Nathan Hjelm
92a15cc316 Merge pull request #1374 from hjelmn/tune_fix
Fix parsing of envvars in MCA files
2016-02-17 17:24:33 -07:00
Nathan Hjelm
32236736a4 Fix parsing of envvars in MCA files
This commit fixes a memory corruption bug when parsing lines of the
form:

-x FOO=bar

The code was making changes to the size of the buffer allocated for
key_buffer without making the appropriate changes to
key_buffer_len. This was causing subsequent calls to save_param_name
to write to invalid memory.

This commit makes the following changes:

  - Fix the above bug by modifying trim_name to move the string within
    the buffer instead of re-allocating space for the trimmed string.

  - Cleaned up both trim_name and save_param_name. Both functions took
    a prefix and suffix to trim. Problem was the prefix was not
    treated like a prefix. Instead the "prefix" was located inside the
    string using strstr then the trimmed value started after the
    substring (even in the middle of the string). To allow trimming
    both -x and --x (as well as -mca and --mca) trim_name is now
    called with each prefix.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-02-17 14:58:05 -07:00
Nathan Hjelm
4f4ea96940 btl/openib/udcm: fix local XRC connections
This commit ensures ib_addr->remote_xrc_rcv_qp_num value is set when
creating the loopback queue pair. This is needed when communicating
with any other local peer.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-02-17 14:54:19 -07:00
Ralph Castain
8f9508cace Further enhance the support for Singularity containers. Extend the "personality" command-line option to allow specifying both model (e.g., "ompi") and container (e.g., "singularity"), and add the necessary logic to support multiple options. Add a new pmix "isolated" component to handle singletons where no HNP is available since containers cannot launch the HNP. 2016-02-17 13:33:06 -08:00
Jeff Squyres
d544e0e6e0 Merge pull request #1347 from ggouaillardet/topic/dss_tests
test/dss: update tests to make them usable again, and run them
2016-02-17 09:01:36 -05:00
Nathan Hjelm
bf8360388f btl/openib/udcm: fix XRC support
This commit fixes two bugs in XRC support

 - When dynamic add_procs support was added to master the remote
   process name was added to the non-XRC request structure. The same
   value was not added to the XRC xconnect structure. This error was
   not caught because the send/recv code was incorrectly using the
   wrong structure member. This commmit adds the member and ensure the
   xconnect code uses the correct structure.

 - XRC loopback QP support has been fixed. It was 1) not setting the
   correct fields on the endpoint structure, 2) calling
   udcm_xrc_recv_qp_connect, and 3) was not initializing the endpoint
   data.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-02-16 16:49:04 -07:00
Nathan Hjelm
201c280e6c btl/openib: fix error in param check in mca_btl_openib_put
mca_btl_openib_put incorrectly checks the qp inline max before
allowing an inline put. This check will always fail for an endpoint
that has not been connected. The commit changes the check to use the
btl_put_local_registration_threshold instead.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-02-16 16:46:32 -07:00
Nathan Hjelm
123a39ac3c btl/openib: fix regression in XRC support
Commit open-mpi/ompi@400af6c52d
introduced a regression in XRC support. The commit reversed the
ordering of shared receive queue (SRQ) and completion queue (CQ)
completion. CQ creation must always preceed SRQ creation when using
XRC as the CQs are needed to create the SRQs. This commit fixes the
ordering so that CQs are always created before SRQs.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-02-16 16:46:20 -07:00
George Bosilca
9dc79f4bc1 Initialize these 2 common symbols. 2016-02-15 12:27:24 -05:00
igor-ivanov
d9eefefa74 Merge pull request #1351 from igor-ivanov/pr/issue-1336
opal/memory: Move Memory Allocation Hooks usage from openib
2016-02-15 14:07:36 +04:00
Ralph Castain
06c3dfc052 Refactor the ORTE DVM code so that external codes can submit multiple jobs using only a single connection to the HNP.
* Clean up the DVM so it continues to run even when applications error out and we would ordinarily abort the daemons.
* Create a new errmgr component for the DVM to handle the differences.
* Cleanup the DVM state component.
* Add ORTE bindings directory and brief README
* Pass a local tool index around to match jobs.
* Pass the jobid on job completion.
* Fix initialization logic.
* Add framework for python wrapper.
* Fix terminate-with-non-zero-exit behavior so it properly terminates only the indicated procs, notifies orte-submit, and orte-dvm continues executing.
* Add some missing options to orte-dvm
* Fix a bug in -host processing that caused us to ignore the #slots designator. Add a new attribute to indicate "do not expand the DVM" when submitting job spawn requests.
* It actually makes no sense that we treat the termination of all children differently than terminating the children of a specific job - it only creates confusion over the difference in behavior. So terminate children the same way regardless.

Extend the cmd_line utility to easily allow layering of command line definitions

Catch up with ORTE interface change and make build more generic.

Disable "fixed dvm" logic for now.

Add another cmd_line function to merge a table of cmd line options with another one, reporting as errors any duplicate entries. Use this to allow orterun to reuse the orted_submit code

Fix the "fixed_dvm" logic by ensuring we reset num_new_daemons to zero. Also ensure that the nidmap is sent with the first job so the downstream daemons get the node info. Remove a duplicate cmd line entry in orterun.

Revise the DVM startup procedure to pass the nidmap only once, at the startup of the DVM. This reduces the overhead on each job launch and ensures that the nidmap doesn't get overwritten.

Add new commands to get_orted_comm_cmd_str().

Move ORTE command line options to orte_globals.[ch].

Catch up with extra orte_submit_init parameter.

Add example code.

Add documentation.

Bump version.

The nidmap and routing data must be updated prior to propagating the xcast or else the xcast will fail.

Fix the return code so it is something more expected when an error occurs. Ensure we get an error returned to us when we fail to launch for some reason. In this case, we will always get a launch_cb as we did indeed attempt to spawn it. The error code will be returned in the complete_cb.

Fix the return code from orte_submit_job - it was returning the tracker index instead of "success". Take advantage of ORTE's pretty-print capabilities to provide a nice error output explaining why we failed to launch. Ensure we always get a launch_cb when we fail to launch, but no complete_cb as the job never launched.

Extend the error reporting capability to job completion as well.

Add index parameter to orte_submit_job().

Add orte_job_cancel and implement ORTE_DAEMON_TERMINATE_JOB_CMD.

Factor out dvm termination.

Parse the terminate option at tool level.

Add error string for ORTE_ERR_JOB_CANCELLED.

Add some safeguards.

Cleanup and/of comments.

Enable the return.

Properly ORTE_DECLSPEC orte_submit_halt.

Add orte_submit_halt and orte_submit_cancel to interface.

Use the plm interface to terminate the job
2016-02-13 08:10:44 -08:00
Ralph Castain
aa9e5a1a27 Add support for Singularity containers, including a .m4 file for checking if Singularity is available and an orte/schizo component for setting the proper support if a container was given as the executable
Cleanup the configury so we properly check for Singularity under the various typical use-cases

Bring the Singularity support online. We have to turn "off" the sm BTL as it segfaults from inside the container - root cause remains unclear. Also turned "off" the various OPAL shmem components in case they are involved and someone else tries to use them. Happily, the vader BTL works just fine!
2016-02-13 04:40:22 -08:00
Igor Ivanov
8b05f308f9 opal/memory: Move Memory Allocation Hooks usage from openib
These changes fix issue https://github.com/open-mpi/ompi/issues/1336

- improve abstractions: opal/memory/linux component should be single place that opeartes with
Memory Allocation Hooks.
- avoid collisions in case dynamic component open/close: it is safe because it is linked statically.
- does not change original behaivour.
2016-02-11 14:46:35 +02:00
Gilles Gouaillardet
96310f439b sentinel: fix 32 bits arch
since a sentinel is only made from the current job, only store the
first 31 bits of the vpid into the sentinel.
2016-02-10 15:44:07 +09:00
Gilles Gouaillardet
7c99115a94 opal/dss: fix comparison of OPAL_VALUE types 2016-02-09 16:21:57 +09:00
Jeff Squyres
8558def858 opal.pc.in: fix typo; use the write AC_SUBST'ed variable
As reported by @marksantcroos, this substitution in opal.pc was
incorrect -- it left @{libdir} in the string (vs. ${libdir}).  The fix
is simple: use the proper substitution variable in opal.pc (it was
never updated to reflect the new/correct name that was created just
for the pkg-config files).

Fixes open-mpi/ompi#1343.
2016-02-08 10:55:18 -08:00
Jeff Squyres
8d0a592563 usnic: update a few verbose reachability messages 2016-02-06 03:28:48 -08:00
Jeff Squyres
87dbe6ce01 usnic: add high-verbose reachability messages 2016-02-06 03:28:47 -08:00
Jeff Squyres
dac2fe1589 usnic: ensure to use ntohl() for network-order values 2016-02-06 03:28:47 -08:00
Jeff Squyres
51240394a7 usnic: ensure to init module->av_eq_num 2016-02-06 03:28:47 -08:00
Jeff Squyres
89eea51075 usnic: fix calculation for number of blocks 2016-02-02 16:56:34 -08:00
Jeff Squyres
d812695201 verbs: fix typo 2016-02-02 14:23:45 -08:00
Jeff Squyres
2cf9b26d34 verbs_usnic: previous commit missed a symbol
0715802f52c24c236700ac085090d5441524644c missed that there is a call
to a common/verbs_usnic symbol in the common/verbs component.  This
call needs to be compiled out when the common/verbs_usnic component is
not built.
2016-02-02 14:05:59 -08:00
Nathan Hjelm
a016c17714 Merge pull request #1338 from hjelmn/ugni_threading
UNGI threading fixes
2016-02-02 13:22:57 -07:00
Jeff Squyres
0715802f52 verbs_usnic: do not build by default
This component is a workaround to a bug in libibverbs that prints a
dire warning that usNIC devices are not supported (of course not --
usNIC devices provide functionality through libfabric, not
libibverbs).  This component was written before a better workaround
was created: a "no op" libibverbs plugin for usNIC devices
(https://github.com/cisco/libusnic_verbs, and is also available in
binary form on cisco.com).

Hence, this component no longer builds by default.  It's still
available if a user specifically asks for it (e.g., if they do not
want to install the "no op" libibverbs plugin), but it's not the
default.  This component also has the side-effect of making
libopen-pal.so depend on libibverbs.so, which can be annoying for
packagers (which is another reason it isn't built by default any
more).
2016-02-02 11:22:04 -08:00
Nathan Hjelm
cd11fc3081 btl/ugni: fix race condition that causes completions to be dropped
The send code in the ugni btl has an optimization that enables it to
return 1 (fragment gone) in some cases. This optimization involved
removing the btl ownership and callback flags to ensure the fragment
stuck around long enough for its completion flag to be checked. This
works fine for the single-threaded case but not in the multi-threaded
case. It is possible that a fragment will be completed by another
thread while a thread is in mca_btl_ugni_send. This competition can
lead to a leaked fragment, missed callback, or both. To fix the issue
without removing the optimization a reference count has been added to
the fragment. Callbacks and fragment release will not be made until
the fragment reference count has reach 0. The count is incremented
before sending the frag and decremented after the completion flag has
been checked. The fix has been verified to work using a multi-threaded
RMA benchmark with the osc/pt2pt component.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-02-02 12:14:31 -07:00
Nathan Hjelm
14704201e2 btl/ugni: fix race condition when adding endpoint to wait list
This commit fixes a race condition that can cause an endpoint to be
added to the wait list multiple times. To fix the issue an additional
check has been added to ensure the endpoint is not on the wait list
after the wait list lock is held. The wait list processing code has
also been updated to keep the wait list lock until all wait listed
endpoints have been handled. This reduces the chance that an endpoint
that is being processed by the wait list code is not re-added to the
list by a competing send.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-02-02 12:13:49 -07:00
Jeff Squyres
9f3ed00125 usnic: minor updates from code review
Three minor updates from the code review of
https://github.com/open-mpi/ompi-release/pull/933:

* Remove an extra blank line a show_help message
* We no longer allow -1 for the MCA param btl_usnic_av_eq_num, so
  change the flag to REGINT_GE_ONE
* Change "num_blocks" definition to be in terms of block_len (not
  eq_size)
2016-02-01 11:14:30 -08:00
Jeff Squyres
c2615a4732 usnic: change retrans timeout to 5ms
A bunch of empirical testing has shown that increasing the retranmit
timeout from 1ms to 5ms doesn't adversely affect performance, yet
decreases the number of gratuitious retransmissions.
2016-01-30 10:49:14 -08:00
Jeff Squyres
797d5026c8 usnic: better av_eq_num default value handling 2016-01-30 10:46:14 -08:00
Jeff Squyres
db825abc00 usnic: don't overrun the fi_av_insert() EQ
Add endpoints in a blocked manner so that we don't overrun the
fi_av_insert() event queue.  Also make the AV EQ length an MCA param,
and report it in mca_btl_base_verbose >=5 output.
2016-01-30 08:33:48 -08:00
Jeff Squyres
d624e0d60f usnic: fix wraparound sequence number issue
Sequence numbers will wrap around; it is not sufficient to check for
(seq-1) -- must use the SEQ_DIFF macro to properly handle the
wraparound.

This bug wasn't serious; it just meant we might retransmit one or two
extra times when retransmits were triggerd and the sequence numbers
wrapped around their sliding windows.
2016-01-30 08:32:13 -08:00
Jeff Squyres
4de4a263f5 usnic: ensure all messages are sent on the data channel
Messages should go on the data channel, even if they're short.  Only
ACKs go on the priority channel.
2016-01-30 08:31:21 -08:00
Gilles Gouaillardet
d529951206 hwloc: correctly count cores with at least one allowed PU
when SMT is enabled, a core must be counted as long as one of its hwthread is allowed

Thanks Ben Menadue for the report.

This fixes a regression from open-mpi/ompi@6d149554a7
2016-01-29 11:54:34 +09:00
Edgar Gabriel
3f7fff5780 Merge pull request #1331 from edgargabriel/solaris-statfs-fix
Solaris statfs fix
2016-01-28 20:16:33 -06:00
Gilles Gouaillardet
f5a53b5f1e pmix: fix Makefile.am to correctly exclude autogenerated file from tarball
(back-ported from pmix/master@73daf58ee5)
2016-01-28 11:42:03 +09:00
Edgar Gabriel
722aab92e6 - extend opal_path_nfs to retrieve the file system type
- use opal_path_nfs in the fs_base function to avoid code duplication.
2016-01-26 13:36:21 -06:00
Gilles Gouaillardet
6d149554a7 hwloc: have opal_hwloc_base_get_pu search for HWLOC_OBJ_PU when mpirun is invoked with --use-hwthread-cpus
Fixes open-mpi/ompi#1247
2016-01-26 18:10:33 +09:00
Gilles Gouaillardet
15e26da1e1 pmix configury: add missing PMIX_CHECK_ICC_VARARGS function
Thanks Paul Hargrove for the report

(back-ported from pmix/master@7b16e914bf)
2016-01-26 10:57:16 +09:00
rhc54
b172b8599b Merge pull request #1285 from ggouaillardet/topic/pmix_dist_fix
pmix: do not include automatically generated include/private/autogen/…
2016-01-16 20:49:41 -08:00
Ralph Castain
4dad5de8ff Silence a couple of warnings - strncpy returns a char*, not an int 2016-01-16 09:44:52 -08:00
Jeff Squyres
348ac507c2 usnic: explain why we still have OPAL_HAVE_HWLOC
Put in a comment explaining why btl_usnic_compat.h still defines
OPAL_HAVE_HWLOC, even though master/v2.x no longer does.
2016-01-16 04:11:05 -08:00
Jeff Squyres
0f5fcf9029 usnic: fix common symbol 2016-01-16 03:55:27 -08:00