In many cases, this was a simple string replace. In a few places, it
entailed:
1. Updating some comments and removing now-redundant foo[size-1]='\0'
statements.
2. Updating passing (size-1) to (size) (because opal_string_copy()
wants the entire destination buffer length).
This commit actually fixes a bunch of potential (yet quite unlikely)
bugs where we could have ended up with non-null-terminated strings.
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
This commit updates the entire codebase to use specific opal types for
all atomic variables. This is a change from the prior atomic support
which required the use of the volatile keyword. This is the first step
towards implementing support for C11 atomics as that interface
requires the use of types declared with the _Atomic keyword.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
This commit replaces the current VMA tree implementation with one that
uses the new opal_interval_tree_t class. Since the VMA tree lock is no
longer used this commit also updates rcache/grdma and btl/vader to
take better care when searching for existing registrations.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
This commit fixes an issue when a registration is created for a large
region and then invalidated while part of it is in use.
References #4509
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
It is possible to have parts of an in-use registered region be passed
to munmap or madvise. This does not necessarily mean the user has made
an error but does mean the entire region should be invalidated. This
commit checks that the munmap or madvise base matches the beginning of
the cached region. If it does and the region is in-use then we print
an error. There will certainly be false-negatives where a user
unmaps something that really is in-use but that is preferrable to a
false-positive.
References #4509
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
This commit renames the arithmetic atomic operations in opal to
indicate that they return the new value not the old value. This naming
differentiates these routines from new functions that return the old
value.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
* Resolves#3705
* Components should link against the project level library to better
support `dlopen` with `RTLD_LOCAL`.
* Extend the `mca_FRAMEWORK_COMPONENT_la_LIBADD` in the `Makefile.am`
with the appropriate project level library:
```
MCA components in ompi/
$(top_builddir)/ompi/lib@OMPI_LIBMPI_NAME@.la
MCA components in orte/
$(top_builddir)/orte/lib@ORTE_LIB_PREFIX@open-rte.la
MCA components in opal/
$(top_builddir)/opal/lib@OPAL_LIB_PREFIX@open-pal.la
MCA components in oshmem/
$(top_builddir)/oshmem/liboshmem.la"
```
Note: The changes in this commit were automated by the script in
the commit that proceeds it with the `libadd_mca_comp_update.py`
script. Some components were not included in this change because
they are statically built only.
Signed-off-by: Joshua Hursey <jhursey@us.ibm.com>
The current VMA cache implementation backing rcache/grdma can run into
a deadlock situation in multi-threaded code when madvise is hooked and
the c library uses locks. In this case we may run into the following
situation:
Thread 1:
...
free () <- Holding libc lock
madvice_hook ()
vma_iteration () <- Blocked waiting for vma lock
Thread 2:
...
vma_insert () <- Holding vma lock
vma_item_new ()
malloc () <- Blocked waiting for libc lock
To fix this problem we chose to remove the madvise () hook but that
fix is causing issue #3685. This commit aims to greatly reduce the
chance that the deadlock will be hit by putting vma items into a free
list. This moves the allocation outside the vma lock. In general there
are a relatively small number of vma items so the default is to
allocate 2048 vma items. This default is configurable but it is likely
the number is too large not too small.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
Hostname and PID are output as a message prefix in many places in
our code. Their printf-formats were either `[%s:%d]` or `[%s:%05d]`.
This commit changes `[%s:%d]` to `[%s:%05d]`. The latter was more
widely used in our code (including OPAL output system and the signal
handler).
Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
This commit makes the vma tree garbage collection list a lifo. This
way we can avoid having to hold any lock when releasing vmas. In
theory this should finally fix the hold-and-wait deadlock detailed
in #1654.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
This commit fixes a deadlock that can occur when the libc version
holds a lock when calling munmap. In this case we could end up calling
free() from vma_tree_delete which would in turn try to obtain the lock
in libc. To avoid the issue put any deleted vma's in a new list on the
vma module and release them on the next call to vma_tree_insert. This
should be safe as this function is not called from the memory hooks.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
This commit fixes several bugs in the registration cache code:
- Fix a programming error in the grdma invalidation function that can
cause an infinite loop if more than 100 registrations are
associated with a munmapped region. This happens because the
mca_rcache_base_vma_find_all function returns the same 100
registrations on each call. This has been fixed by adding an
iterate function to the vma tree interface.
- Always obtain the vma lock when needed. This is required because
there may be other threads in the system even if
opal_using_threads() is false. Additionally, since it is safe to do
so (the vma lock is recursive) the vma interface has been made
thread safe.
- Avoid calling free() while holding a lock. This avoids race
conditions with locks held outside the Open MPI code.
Fixesopen-mpi/ompi#1654.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
This commit fixes an error in the failure path of leave_pinned. When
the rcache tries to enable leave_pinned but leave_pinned was not
specifically requested (opal_leave_pinned == -1) the code was
erroneously printing an error and returning NULL.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
Because of the removal of the linux memory component it is no longer
necessary to initialize the memory component in opal_init(). This
commit moves the initialization to the creation of the first rcache
component.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
This commit rewrites both the mpool and rcache frameworks. Summary of
changes:
- Before this change a significant portion of the rcache
functionality lived in mpool components. This meant that it was
impossible to add a new memory pool to use with rdma networks
(ugni, openib, etc) without duplicating the functionality of an
existing mpool component. All the registration functionality has
been removed from the mpool and placed in the rcache framework.
- All registration cache mpools components (udreg, grdma, gpusm,
rgpusm) have been changed to rcache components. rcaches are
allocated and released in the same way mpool components were.
- It is now valid to pass NULL as the resources argument when
creating an rcache. At this time the gpusm and rgpusm components
support this. All other rcache components require non-NULL
resources.
- A new mpool component has been added: hugepage. This component
supports huge page allocations on linux.
- Memory pools are now allocated using "hints". Each mpool component
is queried with the hints and returns a priority. The current hints
supported are NULL (uses posix_memalign/malloc), page_size=x (huge
page mpool), and mpool=x.
- The sm mpool has been moved to common/sm. This reflects that the sm
mpool is specialized and not meant for any general
allocations. This mpool may be moved back into the mpool framework
if there is any objection.
- The opal_free_list_init arguments have been updated. The unused0
argument is not used to pass in the registration cache module. The
mpool registration flags are now rcache registration flags.
- All components have been updated to make use of the new framework
interfaces.
As this commit makes significant changes to both the mpool and rcache
frameworks both versions have been bumped to 3.0.0.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
There is currently a path through the grdma mpool and vma rcache that
leads to deadlock. It happens during the rcache insert. Before the
insert the rcache mutex is locked. During the call a new vma item is
allocated and then inserted into the rcache tree. The allocation
currently goes through the malloc hooks which may (and does) call back
into the mpool if the ptmalloc heap needs to be reallocated. This
callback tries to lock the rcache mutex which leads to the
deadlock. This has been observed with multi-threaded tests and the
openib btl.
This change may lead to some minor slowdown in the rcache vma when
threading is enabled. This will only affect larger message paths in
some of the btls.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
A few uninitialized common symbols are remaining:
common symbols generated by flex :
* opal/util/keyval/keyval_lex.l: opal_util_keyval_yyleng
* opal/util/keyval/keyval_lex.o: opal_util_keyval_yytext
* opal/util/show_help_lex.l: opal_show_help_yyleng
* opal/util/show_help_lex.l: opal_show_help_yytext
common symbol generated by "external" hwloc library:
* opal/mca/hwloc/hwloc191/hwloc/src/components.o: component_map
This commit adds support for project_framework_component_* parameter
matching. This is the first step in allowing the same framework name
in multiple projects. This change also bumps the MCA component version
to 2.1.0.
All master frameworks have been updated to use the new component
versioning macro. An mca.h has been added to each project to add a
project specific versioning macro of the form
PROJECT_MCA_VERSION_2_1_0.
Signed-off-by: Nathan Hjelm <hjelmn@me.com>
This commit adds an owner file in each of the component directories
for each framework. This allows for a simple script to parse
the contents of the files and generate, among other things, tables
to be used on the project's wiki page. Currently there are two
"fields" in the file, an owner and a status. A tool to parse
the files and generate tables for the wiki page will be added
in a subsequent commit.
There was a mismatch between the structure for mca_rcache_vma_t and
the OBJ_CLASS_INSTANCE. One was opal_list_item_t and the other was
ompi_free_list_item_t. The super class in the structure looks like it
is the correct one. Changed the superclass in OBJ_CLASS_INSTANCE to
match.
WHAT: Open our low-level communication infrastructure by moving all necessary components (btl/rcache/allocator/mpool) down in OPAL
All the components required for inter-process communications are currently deeply integrated in the OMPI layer. Several groups/institutions have express interest in having a more generic communication infrastructure, without all the OMPI layer dependencies. This communication layer should be made available at a different software level, available to all layers in the Open MPI software stack. As an example, our ORTE layer could replace the current OOB and instead use the BTL directly, gaining access to more reactive network interfaces than TCP. Similarly, external software libraries could take advantage of our highly optimized AM (active message) communication layer for their own purpose. UTK with support from Sandia, developped a version of Open MPI where the entire communication infrastucture has been moved down to OPAL (btl/rcache/allocator/mpool). Most of the moved components have been updated to match the new schema, with few exceptions (mainly BTLs where I have no way of compiling/testing them). Thus, the completion of this RFC is tied to being able to completing this move for all BTLs. For this we need help from the rest of the Open MPI community, especially those supporting some of the BTLs. A non-exhaustive list of BTLs that qualify here is: mx, portals4, scif, udapl, ugni, usnic.
This commit was SVN r32317.
