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103 Коммитов

Автор SHA1 Сообщение Дата
Howard Pritchard
e49a37c034 ownership: update ownership files
per discussions at OMPI devel workshop

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2015-06-25 10:04:42 -06:00
Ralph Castain
869041f770 Purge whitespace from the repo 2015-06-23 20:59:57 -07:00
Gilles Gouaillardet
9d56b85b55 initialize common symbols from ompi 2015-05-08 10:11:58 +09:00
Nathan Hjelm
df75d0382f ompi: use C99 subobject naming for component initialization
This commit helps future-proof ompi components by initializing each
component member by name.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-04-18 10:29:58 -06:00
Nathan Hjelm
b68d66bb9b MCA: Add the project/project version to the MCA base component
This commit adds support for project_framework_component_* parameter
matching. This is the first step in allowing the same framework name
in multiple projects. This change also bumps the MCA component version
to 2.1.0.

All master frameworks have been updated to use the new component
versioning macro. An mca.h has been added to each project to add a
project specific versioning macro of the form
PROJECT_MCA_VERSION_2_1_0.

Signed-off-by: Nathan Hjelm <hjelmn@me.com>
2015-03-27 10:59:04 -06:00
Gilles Gouaillardet
1896d4fba7 bcol/basesmuma: fix misc memory leak
as reported by Coverity with CID 715762
2015-03-09 17:22:25 +09:00
Gilles Gouaillardet
d1b2f043ff fix misc memory leaks
as already reported by Coverity with CIDs
71818, 71819, 72250, 715767, 1196749 and 1274002
2015-03-05 13:58:05 +09:00
Gilles Gouaillardet
464dbccb7b ompi/bcol: fix misc memory leaks
as reported by Coverity with CIDs 715758-715762,715765 and 715767
2015-03-02 12:48:02 +09:00
Jeff Squyres
8d04215741 coll: trivial spelling fix
s/Algoritm/Algorithm/g
2015-02-27 18:20:17 -08:00
Jeff Squyres
a85a392896 Merge pull request #422 from jsquyres/topic/coverity-fixes
Some Coverity fixes
2015-02-24 17:00:10 -05:00
Jeff Squyres
fd815bba22 bcol basesmuma allreduce: remove redundant assignment
This was CID 1196655 and 1196656
2015-02-24 15:24:10 -05:00
Nathan Hjelm
5f1254d710 Update code base to use the new opal_free_list_t
Use of the old ompi_free_list_t and ompi_free_list_item_t is
deprecated. These classes will be removed in a future commit.

This commit updates the entire code base to use opal_free_list_t and
opal_free_list_item_t.

Notes:

OMPI_FREE_LIST_*_MT -> opal_free_list_* (uses opal_using_threads ())

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-02-24 10:05:45 -07:00
Howard Pritchard
bf89131f9e add owner files to opa/ompi/orte mca directories
This commit adds an owner file in each of the component directories
for each framework.  This allows for a simple script to parse
the contents of the files and generate, among other things, tables
to be used on the project's wiki page.  Currently there are two
"fields" in the file, an owner and a status.  A tool to parse
the files and generate tables for the wiki page will be added
in a subsequent commit.
2015-02-22 15:10:23 -07:00
Jeff Squyres
30f05bc966 Makefiles: remove unused macros 2015-01-31 04:51:25 -08:00
Gilles Gouaillardet
cf9e144f05 silence warnings
gcc 3.4.3 on solaris 10 issues some warnings

cmr=v1.8.2:reviewer=hjelmn

This commit was SVN r32500.
2014-08-11 07:36:46 +00:00
Gilles Gouaillardet
b565e69b86 check-help-strings cleanup
This commit was SVN r32491.
2014-08-11 03:19:57 +00:00
Ralph Castain
daeb9b6c4f Some more cleanups. Remove direct references to ORTE by changing OMPI_CAST_ORTE_NAME -> OMPI_CAST_RTE_NAME. Ensure that ORTE tools (mpirun, orted, tools) set the OPAL proc structure fields so OPAL knows what is going on and uses the correct print functions (still need to fix the problem for non-MPI apps). Properly return uint32_t from the opal utilities instead of int32_t as that is what the ORTE process name fields contain.
Thanks to Gilles for pointing out some of the discrepancies.

This commit was SVN r32398.
2014-08-01 14:44:11 +00:00
Ralph Castain
309d75dadc Add missing ampersand - function call required a pointer, not the name itself
This commit was SVN r32357.
2014-07-30 14:48:20 +00:00
Gilles Gouaillardet
b95537376f bcol/basesmuma: fix parameter order
Ref: #4815

This commit was SVN r32353.
2014-07-30 05:38:53 +00:00
Ralph Castain
552c9ca5a0 George did the work and deserves all the credit for it. Ralph did the merge, and deserves whatever blame results from errors in it :-)
WHAT:    Open our low-level communication infrastructure by moving all necessary components (btl/rcache/allocator/mpool) down in OPAL

All the components required for inter-process communications are currently deeply integrated in the OMPI layer. Several groups/institutions have express interest in having a more generic communication infrastructure, without all the OMPI layer dependencies.  This communication layer should be made available at a different software level, available to all layers in the Open MPI software stack. As an example, our ORTE layer could replace the current OOB and instead use the BTL directly, gaining access to more reactive network interfaces than TCP.  Similarly, external software libraries could take advantage of our highly optimized AM (active message) communication layer for their own purpose.  UTK with support from Sandia, developped a version of Open MPI where the entire communication infrastucture has been moved down to OPAL (btl/rcache/allocator/mpool). Most of the moved components have been updated to match the new schema, with few exceptions (mainly BTLs where I have no way of compiling/testing them). Thus, the completion of this RFC is tied to being able to completing this move for all BTLs. For this we need help from the rest of the Open MPI community, especially those supporting some of the BTLs.  A non-exhaustive list of BTLs that qualify here is: mx, portals4, scif, udapl, ugni, usnic.

This commit was SVN r32317.
2014-07-26 00:47:28 +00:00
George Bosilca
843ef1fcb0 ompi_mpi_abort had one extra argument that was never used. Clean it up.
This commit was SVN r32124.
2014-07-03 00:34:44 +00:00
Ralph Castain
f3cb124e50 Revert r32082 and r32070 - the developer's conference has decided to go a different direction on the threaded progress effort. This will involve some degree of prototyping to understand the tradeoffs prior to making a final design decision, and so we'll hold off on the final change until that is completed.
This commit was SVN r32089.

The following SVN revision numbers were found above:
  r32070 --> open-mpi/ompi@12d92d0c22
  r32082 --> open-mpi/ompi@aa6438ef7a
2014-06-25 20:43:28 +00:00
Ralph Castain
12d92d0c22 Per the OMPI developer conference, remove the last vestiges of OMPI_USE_PROGRESS_THREADS
This commit was SVN r32070.
2014-06-24 17:05:11 +00:00
Nathan Hjelm
2614dfc4bf bcol/basesmuma: fix remaining memory leaks in basesmuma
We were still leaking 1) file descriptors for data files, and 2) some
control files. I fixed both of these leaks and everything is looking
good. This should fix the bug where we are running out of file
descriptors when running the loop_spawn test. I also too the
opportunity to refactor the code a bit to make the mapping/unmapping
simpler. This should help avoid these sorts of issues in the future.

Depends on #4678

cmr=v1.8.2:reviewer=manjugv

This commit was SVN r31893.
2014-05-27 18:40:41 +00:00
Gilles Gouaillardet
d04db1e213 Fix mmap flags in bcol_basesmuma_smcm_reg_mmap
if in_ptr is NULL, the MAP_FIXED flag cannot be passed to mmap

this caused a hang in topology/cart and topology/sub from ibm
test suite on trunk.

cmr=v1.8.2:reviewer=hjelmn

This commit was SVN r31890.
2014-05-26 07:18:31 +00:00
Nathan Hjelm
22e59b056a bcol/basesmuma: fix leak in basesmuma code
Basesmuma was vallocing space for control data then mmapping over that
data. Nothing in the code suggests any need for mmapping a specific
address so I did the following to remove the leak:

 - Removed the valloc of the buffer space

 - ftruncate the mmaped file to ensure there is sufficient memory to
   allocate space for the control data.

Ideally this code should be using opal/shmem but that is a larger
change. Keeping it simple for now.

cmr=v1.8.2:reviewer=manjugv

This commit was SVN r31822.
2014-05-19 15:21:58 +00:00
Nathan Hjelm
55f0dcb81a Add netpatterns_cleanup_narray_knomial_tree function to cleanup after
netpatterns_setup_narray_knomial_tree.

Fix a bug in ptpcoll that caused memory allocated by
netpatterns_setup_narray_knomial_tree to leak.

cmr=v1.8.2:reviewer=manjugv

This commit was SVN r31781.
2014-05-15 17:36:26 +00:00
Nathan Hjelm
ddd501c0d9 bcol/base: cleanup code and fix memory leak
The items in the available bcol list were getting leaked. This commit
fixes this leak. I also cleaned up the code a bit. This includes
making use of the opal_argv_free function.

cmr=v1.8.2:reviewer=manjugv

This commit was SVN r31744.
2014-05-13 21:22:18 +00:00
Nathan Hjelm
c13c21d476 basesmuma: clean up the setup code and ensure mapped files are unmapped
We were leaking file descriptors when coll/ml was in use. It turn out
this was because basesmuma was failing to unmap files it had previously
mapped. This commit cleans up the setup code to ensure that we only
attempt to map the control files once per module and then ensures the
files are unmapped when the module is released.

cmr=v1.8.2:reviewer=manjugv

This commit was SVN r31737.
2014-05-13 17:00:31 +00:00
Nathan Hjelm
9e3a0d7b7a basesmuma: modify the minimum size for the large fan-in fan-out allreduce
algorithm

Per suggestion from Manju make sure there isn't a gap in the size ranges
for the available algorithms.

cmr=v1.8.2:ticket=trac:4437:reviewer=ompi-rm1.8

This commit was SVN r31728.

The following Trac tickets were found above:
  Ticket 4437 --> https://svn.open-mpi.org/trac/ompi/ticket/4437
2014-05-13 14:56:21 +00:00
Ralph Castain
a8e2d6c3a6 The bulk of the remaining renaming changes, in one final glorious "blob". Thanks to Jeff for some help chasing down a few spots. Per chat with Jeff, we decided to cleanup a few things that were historical in nature:
top_ompi_srcdir  ->  OMPI_TOP_SRCDIR
top_ompi_builddir -> OMPI_TOP_BUILDDIR

We also split the srcdir/builddir flags according to their local tree (e.g., OPAL_TOP_SRCDIR), and tied them all together in configure.ac. Renamed ompi_ignore and ompi_unignore to be opal_<foo> as these are agnostic markers.

Only thing left is ompilibdir being treated similar to what we dif for srcdir/builddir. Coming soon.

This commit was SVN r31678.
2014-05-07 21:48:53 +00:00
Nathan Hjelm
e963869fdf bcol/basesmuma: close mmapped file descriptor
Not closing this file descriptor will cause us to leak file
descriptors. It is safe to close the file after it has been mmapped.

cmr=v1.8.2:reviewer=manjugv

This commit was SVN r31579.
2014-04-30 22:28:08 +00:00
Nathan Hjelm
a03b11c20e bcol/basesmuma: fix broken allgather algorithm
The algorithm was failing ibm/collective/allgather and iallgather. I
cleaned up the code to eliminate duplicate code paths and tracked the
issue down to an error in the way extra nodes in the knomial exchange
are handled. The new code is more compact and has been tested with up
to 64 ranks with the ibm test suite.

cmr=v1.8.1:reviewer=manjugv

This commit was SVN r31419.
2014-04-16 22:43:52 +00:00
Nathan Hjelm
bd3b550c6d coll/ml: fix leaks
Thanks to ggouaillardet for finding and fixing these issues.

Closes trac:4460

cmr=v1.8.1:reviewer=manjugv

This commit was SVN r31264.

The following Trac tickets were found above:
  Ticket 4460 --> https://svn.open-mpi.org/trac/ompi/ticket/4460
2014-03-27 23:25:31 +00:00
Nathan Hjelm
b3bb90cf2d Do not include inttypes.h directly in Open MPI. Use opal_stdint.h instead.
This commit should finish the work started for #869. Closing that ticket
with this commit.

Closes trac:869

cmr=v1.8.1:reviewer=jsquyres

This commit was SVN r31257.

The following Trac tickets were found above:
  Ticket 869 --> https://svn.open-mpi.org/trac/ompi/ticket/869
2014-03-27 17:56:00 +00:00
Nathan Hjelm
128cfe0a39 coll/ml: cleanup tabs, indentation, and trailing whitespace in
bcol_basesmuma_bcast.c

This commit was SVN r31192.
2014-03-21 21:54:48 +00:00
Nathan Hjelm
d241f95af1 squash into previous. fix coll ml bcast
This commit was SVN r31191.
2014-03-21 21:54:41 +00:00
Nathan Hjelm
6740813c27 bcol/basesmuma: fix selection of coll/ml when only using local procs
When we are only using local ranks basesmuma needs to provide an allreduce
function for both large and small message or else the coll/ml selection
logic will fail. In the future this logic should probably be updated to
just disable allreduce in coll/ml instead of disabling coll/ml. For now
it should be correct to say the basesmuma allgather works for larger
messages.

cmr=v1.8:reviewer=manjugv

This commit was SVN r31190.
2014-03-21 21:54:35 +00:00
Nathan Hjelm
22f64bb62b Addendum to r31096. Up basesmuma algorithm limits to 1M.
After discussion with Manju we decided to update these the process count
limits of the shared memory collectives to an arbitrarily large number.

cmr=v1.7.5:ticket=trac:4405

This commit was SVN r31126.

The following SVN revision numbers were found above:
  r31096 --> open-mpi/ompi@3f469d08e7

The following Trac tickets were found above:
  Ticket 4405 --> https://svn.open-mpi.org/trac/ompi/ticket/4405
2014-03-18 21:25:49 +00:00
Nathan Hjelm
3f469d08e7 coll/ml: increase the number of allowed processes in a local reduce and
add checks to see if the bcol module can support allreduce.

cmr=v1.7.5:reviewer=manjugv

This commit was SVN r31096.
2014-03-17 23:10:19 +00:00
Pavel Shamis
fba1edbf14 Removing ml include from bcol_ptpcoll.h.
It is not really required.

This commit was SVN r31095.
2014-03-17 22:58:40 +00:00
Ralph Castain
cd72aa9b66 Per Dave's comment, bzero has portability issues and little advantage over a simple memset. So let's use the safer solution.
cmr=v1.7.5:reviewer=dgoodell:subject=replace bzero with memset

This commit was SVN r31055.
2014-03-12 22:55:47 +00:00
Ralph Castain
ebd8e545c0 Silence warning
cmr=v1.8:reviewer=hjelmn

This commit was SVN r31005.
2014-03-11 21:59:17 +00:00
Nathan Hjelm
51c5daf1b4 bcol/basesmuma: initialize module with all 0's to fix segmentation faults
in module destructor.

cmr=v1.7.5:reviewer=manjugv

This commit was SVN r30978.
2014-03-10 20:42:47 +00:00
Nathan Hjelm
579a2d10cc bcol/ptpcoll: initialize all pointers in the module to NULL to avoid possible
problems when the module is being destructed.

References #4331

cmr=v1.7.5:reviewer=manjugv

This commit was SVN r30964.
2014-03-07 21:16:20 +00:00
Nathan Hjelm
cb6670b340 bcol/basesmuma: use framework output for error message and fix a rounding error.
cmr=v1.7.5:reviewer=pasha

This commit was SVN r30929.
2014-03-04 16:55:57 +00:00
Manjunath Gorentla Venkata
38e5a753dd basemuma bcol : fixing warnings
This commit was SVN r30784.
2014-02-20 18:30:53 +00:00
Nathan Hjelm
6dd29a05f1 basesmuma: Fix typos in r30627
cmr=v1.7.5:ticket=trac:4158

This commit was SVN r30651.

The following SVN revision numbers were found above:
  r30627 --> open-mpi/ompi@98ad6b3d1e

The following Trac tickets were found above:
  Ticket 4158 --> https://svn.open-mpi.org/trac/ompi/ticket/4158
2014-02-10 16:15:37 +00:00
Nathan Hjelm
98ad6b3d1e bcol/basesmuma: fix initialization on 32-bit platforms
The initialization code did several allgathers on void *'s using
MPI_LONG_LONG_INT. This will produce the wrong result on 32-bit
platforms. Instead use MPI_BYTE with count = sizeof (void *).

cmr=v1.7.5:ticket=trac:4158

This commit was SVN r30627.

The following Trac tickets were found above:
  Ticket 4158 --> https://svn.open-mpi.org/trac/ompi/ticket/4158
2014-02-08 00:00:30 +00:00
Nathan Hjelm
77869c3232 bcol/basesmuma: fix several bugs in the basesmuma code
Found two bugs in basesmuma:

 - Release all resources when tearing down the bcol module.

 - Allways call the allreduce in the smcm code. We do not know
   beforehand whether all procs have all the files mapped.

cmr=v1.7.5:ticket=trac:4158

This commit was SVN r30623.

The following Trac tickets were found above:
  Ticket 4158 --> https://svn.open-mpi.org/trac/ompi/ticket/4158
2014-02-07 21:39:24 +00:00