ports/openmpi
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Автор SHA1 Сообщение Дата
Jeff Squyres
8d38ac3cee java MPI bindings: use strdup() 2015-02-25 14:21:42 -08:00
Howard Pritchard
309dfd6d3d Merge pull request #427 from roblatham00/romio-extended-greq-fix 
fix build error if greq extensions not available
 2015-02-25 10:49:00 -07:00
Mike Dubman
a0afb7d96e Merge pull request #424 from miked-mellanox/topic/master_fix_yalla 
fixes issue #414
 2015-02-25 19:01:47 +02:00
Rob Latham
24a6f14257 fix build error if greq extensions not available 
Fall back to immediately completing the non-blocking request if we are
unable to use the extended generalized request routines.
 2015-02-25 10:52:22 -06:00
Jeff Squyres
c3381150de ob1: fix another PERUSE compile error 2015-02-25 05:53:12 -08:00
yosefe
0332ab4d8b Initialize pml_yalla bsend request status. 2015-02-25 15:33:26 +02:00
Nysal Jan K.A
ded408f485 Fix a crash while closing libnbc 
If the free list initialization fails in libnbc_open()
mca_coll_libnbc_component.active_requests remain uninitialized,
resulting in a crash while closing the component
 2015-02-25 17:26:28 +05:30
Nathan Hjelm
0ac2f08460 pml/ob1: fix peruse compile error 
Fixes #416
 2015-02-24 15:39:46 -07:00
Jeff Squyres
a85a392896 Merge pull request #422 from jsquyres/topic/coverity-fixes 
Some Coverity fixes
 2015-02-24 17:00:10 -05:00
Jeff Squyres
bd99b741d2 java: update to new mpool API 2015-02-24 13:31:23 -08:00
Jeff Squyres
1c3cf068a4 nbc ireduce_scatter: ensure to check the correct return code 
This was CID 1196644 and 1196621
 2015-02-24 15:24:11 -05:00
Jeff Squyres
e9980654a8 nbc ireduce_scatter_block: ensure to check the correct return code 
This was CID 1196643 and 1196615
 2015-02-24 15:24:11 -05:00
Jeff Squyres
657d2cf77b io_ompi: check the correct returned value 
This was CID 731273
 2015-02-24 15:24:11 -05:00
Jeff Squyres
b35eb6fe10 nbc ireduce_scatter_block: ensure to check the correct return code 
This was CID 709594 and 709592
 2015-02-24 15:24:10 -05:00
Jeff Squyres
b0acef6f2d nbc_ireduce_scatter: ensure to check the proper return code 
This was CID 709229 and 709224.
 2015-02-24 15:24:10 -05:00
Jeff Squyres
fd815bba22 bcol basesmuma allreduce: remove redundant assignment 
This was CID 1196655 and 1196656
 2015-02-24 15:24:10 -05:00
Jeff Squyres
10b93e3f6f cart_rank: protect against (cart==NULL) possibilities 
This was CID 1041230
 2015-02-24 15:24:09 -05:00
Jeff Squyres
3758e3a242 topo base: ensure topo is != NULL before acting on it 
This was CID 1041229
 2015-02-24 15:24:09 -05:00
Jeff Squyres
1cf197d771 coll_basic_barrier: guard against opal_hibit() returning -1 
This was CID 1196606 and 1196607
 2015-02-24 15:24:08 -05:00
Nathan Hjelm
6dcdb3daf7 mtl/mxm: fix typo from opal_free_list_t update 2015-02-24 11:43:15 -07:00
igor-ivanov
0f44cdd779 Merge pull request #421 from igor-ivanov/pr/fix-oshmem-coverity 
oshmem: Fix set of coverity issues
 2015-02-24 21:40:06 +04:00
Nathan Hjelm
5ef24000c7 pml/yalla: fix typo in PML_YALLA_FREELIST_INIT 2015-02-24 10:08:54 -07:00
Nathan Hjelm
4443a79af8 mtl/mxm: fix opal_free_list_wait usage error 2015-02-24 10:05:45 -07:00
Nathan Hjelm
5f1254d710 Update code base to use the new opal_free_list_t 
Use of the old ompi_free_list_t and ompi_free_list_item_t is
deprecated. These classes will be removed in a future commit.

This commit updates the entire code base to use opal_free_list_t and
opal_free_list_item_t.

Notes:

OMPI_FREE_LIST_*_MT -> opal_free_list_* (uses opal_using_threads ())

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2015-02-24 10:05:45 -07:00
Nathan Hjelm
ed78553512 Update opal_free_list_t usage to reflect new class interface. 
Please verify your components have been updated correctly. Keep in
mind that in terms of threading:

OPAL_FREE_LIST_GET -> opal_free_list_get_st
OPAL_FREE_LIST_RETURN -> opal_free_list_return_st

I used the opal_using_threads() variant anytime it appeared multiple
threads could be operating on the free list. If this is not the case
update to _st. If multiple threads are always in use change to _mt.
 2015-02-24 10:05:44 -07:00
Igor Ivanov
3e2dd782ea oshmem: Fix set of coverity issues 
Signed-off-by: Igor Ivanov <Igor.Ivanov@itseez.com>
 2015-02-24 19:03:10 +02:00
Jeff Squyres
b70fa3e2cb osc_sm: Fix valgrind warning 
Many thanks to Lisandro Dalcin for contributing this patch.

Fixes open-mpi/ompi#202.
 2015-02-24 03:36:17 -08:00
Jeff Squyres
c7d8563d8d fcoll_two_phase: fix trivial compiler warning 2015-02-23 08:58:43 -08:00
Howard Pritchard
c9e81b54fb Merge pull request #412 from hppritcha/topic/owner_files 
add owner files to opa/ompi/orte mca directories
 2015-02-23 09:48:20 -07:00
Howard Pritchard
61fb62499a hcoll belongs to MLNX and is active 2015-02-23 09:14:03 -07:00
Mike Dubman
e02121af6f Merge pull request #411 from miked-mellanox/topic/fix_cov 
coverity fixes for yalla
 2015-02-23 12:01:05 +02:00
Mike Dubman
5b3b04b26e mxm: revert coverity fixes 
mxm fails on this commit: 780c93ee57c6e8c788032138a2031b043a8d4858
 2015-02-23 07:52:28 +02:00
Gilles Gouaillardet
004160f8da coll/tuned: silence CID 1269934 2015-02-23 13:45:23 +09:00
Howard Pritchard
bf89131f9e add owner files to opa/ompi/orte mca directories 
This commit adds an owner file in each of the component directories
for each framework.  This allows for a simple script to parse
the contents of the files and generate, among other things, tables
to be used on the project's wiki page.  Currently there are two
"fields" in the file, an owner and a status.  A tool to parse
the files and generate tables for the wiki page will be added
in a subsequent commit.
 2015-02-22 15:10:23 -07:00
Mike Dubman
00d416ba9d yalla: fix coverity errors 
dead code fix
 2015-02-22 13:57:45 +02:00
Jeff Squyres
4c91bdfb0c MPI_Barrier.3in: fix prototypes 
Also fix MPI_Ibarrier.3in to .so to the right MPI_Barrier.3 page.

Thanks to Maximilian for bringing the issue to our attention.
 2015-02-21 06:47:12 -08:00
Jeff Squyres
9b716d946e wrappers: fix errant @{libdir} reference in pkg-config files 
The RPATH support added a @{libdir} token into
<package>_WRAPPER_EXTRA_LDFLAGS.  However, these flags are also
substituted into the pkg-config data files, and they don't understand
the @{foo} notation.  So convert @{libdir} into ${libdir}, which
pkg-config *does* understand.

Thanks to Christoph Junghans (@junghans) for notifying us of the issue.

Fixes #406.
 2015-02-20 08:43:19 -08:00
Jeff Squyres
ae5424c18b MPI_Intercomm_merge: fix typo in man page 
Thanks to Harald Servat for noticing and sending a patch.
 2015-02-20 07:13:55 -08:00
Igor Ivanov
010dce307a Fix set of coverity issues 
List of CIDs (scan.coverity.com):
oshmem:
1269787, 1269907, 1270161, 1270162, 1270977, 1270978
ompi:
1270170, 1270172, 1270173

Signed-off-by: Igor Ivanov <Igor.Ivanov@itseez.com>
 2015-02-20 17:45:46 +04:00
Ralph Castain
8b625c2756 Ensure the provider name isn't NULL before trying to strdup it 2015-02-19 08:38:23 -08:00
Jeff Squyres
6098b84294 libfabric: pass the appropriate LDFLAGS to libfabric components 
When compiling against an external libfabric, ensure to also pass the
appropriate -L flags so that the compiler/linker can find it.
 2015-02-19 05:35:38 -08:00
Rolf vandeVaart
dbd0064713 Fix bug in CUDA-aware and GDR introduced by refactoring 2015-02-18 17:44:28 -05:00
Gilles Gouaillardet
5db3065d63 fortran: fix misc memory leak in lookup_name 
as reported by Coverity with CID 1269897
 2015-02-18 16:41:56 +09:00
Gilles Gouaillardet
bda8058f39 coll/tuned: fix memory leaks and misc issues 
as reported by Coverity with CIDs
70132, 70265, 70267, 70268, 70322, 70400, 70580, 70615,
1269934, 1269944, 1269968, 1269982, 1269983
 2015-02-18 16:29:42 +09:00
Nathan Hjelm
030e9bc714 mtl/ofi: fix mca variable usage error 
The fi_fabric function appears to free the provider string passed in
in the fabric_attr. This causes MCA to free an invalid pointer when
the parameter is freed.

References #374
 2015-02-17 12:15:31 -07:00
Gilles Gouaillardet
7dabc7b3ab bml/r2: fix a typo 
reported by Coverity as CID 1270228
 2015-02-17 14:28:17 +09:00
Jeff Squyres
0bb1dfeca9 osc_base_obj_convert: remove unnecessary MEMCHECKER line 
Commit open-mpi/ompi@1a3597aam changed the type of the `convertor`
variable from `ompi_osc_base_convertor_t` (which contained an
`opal_convertor_t`) to an `opal_convertor_t`.  Hence, using memchecker
to ensure that the inner convertor of the `ompi_osc_base_convertor_t`
is considered initialized is now unnecessary.
 2015-02-16 07:27:44 -08:00
Gilles Gouaillardet
02da8bfa93 ompi/java: fix misc bugs 
as reported by Coverity with CIDs 1270187, 1270189 and 1270190
 2015-02-16 15:19:53 +09:00
Gilles Gouaillardet
0d560ddf77 osc: fix typo 
this typo caused build failure when configure'd with --enable-memchecker
see http://mtt.open-mpi.org/index.php?do_redir=2234
 2015-02-16 10:09:08 +09:00
George Bosilca
a7a4d6335e Various cleanups. 2015-02-15 11:39:09 -05:00