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Граф коммитов

4431 Коммитов

Автор SHA1 Сообщение Дата
Artem Polyakov
71da0fcbef plm/rsh: Propagate PMIx prefix to orted's
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
2017-08-02 08:06:13 +03:00
Ralph Castain
f39ce67982 Merge pull request #3951 from rhc54/topic/hwloc2
Update to hwloc 2.0.0a
2017-08-01 15:18:31 -06:00
Ralph Castain
e94786f4b7 Revert "Check for OPAL_PREFIX and set corresponding PMIX_PREFIX if found"
This reverts commit 3744967adb.

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-08-01 08:14:12 -06:00
Ralph Castain
3744967adb Check for OPAL_PREFIX and set corresponding PMIX_PREFIX if found
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-07-31 09:14:01 -06:00
Boris Karasev
e20b581529 pmix: fixed immediate request
This commit fixes a hang when using external PMIx v1 module

Signed-off-by: Boris Karasev <karasev.b@gmail.com>
2017-07-28 15:53:48 +06:00
Ralph Castain
7a83fdb9bb Update to hwloc 2.0.0a with shmem support.
Update to support passing of HWLOC shmem topology to client procs
Update use of distance API per @bgoglin
Have the openib component lookup its object in the distance matrix
Bring usnic up-to-date
Restore binding for hwloc2

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-07-25 20:26:22 -07:00
Ralph Castain
0042c758f1 Update the tools support so it allows tools to access PMIx
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-07-25 17:10:08 -07:00
Ralph Castain
b225366012 Bring the ofi/rml component online by completing the wireup protocol for the daemons. Cleanup the current confusion over how connection info gets created and
passed to make it all flow thru the opal/pmix "put/get" operations. Update the PMIx code to latest master to pickup some required behaviors.

Remove the no-longer-required get_contact_info and set_contact_info from the RML layer.

Add an MCA param to allow the ofi/rml component to route messages if desired. This is mainly for experimentation at this point as we aren't sure if routing wi
ll be beneficial at large scales. Leave it "off" by default.

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-07-20 21:01:57 -07:00
Gilles Gouaillardet
60aa9cfcb6 hwloc: add support for hwloc v2 API
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-07-20 17:39:44 +09:00
Gilles Gouaillardet
9f29f3bff4 hwloc: since WHOLE_SYSTEM is no more used, remove useless
checks related to offline and disallowed elements

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-07-20 17:39:21 +09:00
Gilles Gouaillardet
1a34224948 hwloc: do not set the HWLOC_TOPOLOGY_FLAG_WHOLE_SYSTEM flag
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-07-20 17:39:16 +09:00
Ralph Castain
fca68b070b Merge pull request #3934 from rhc54/topic/singleton
Fix the isolated pmix component. Cleanup the ess/singleton component …
2017-07-19 16:02:37 -05:00
Ralph Castain
543c16b28d Fix the isolated pmix component. Cleanup the ess/singleton component - we shouldn't be automatically discovering the local topology as that is now done on-demand.
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-07-19 12:14:29 -07:00
Geoffrey Paulsen
71333a4b14 Transitioning ownership of rmaps/seq and rmaps/rank_file from Intel to IBM. 2017-07-18 21:31:01 -04:00
Gilles Gouaillardet
da34e2f109 ess/base: silence a warning
by fixing a static initializer

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-07-19 09:30:53 +09:00
Ralph Castain
8a98aab6cc Fix signal forwarding on ORTE daemons so that _all_ daemons do it, regardless of environment. Add missing support for SIGTSTP and a few others.
Thanks to Eugene Dedits for reporting the problem.

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-07-18 09:58:55 -07:00
Jeff Squyres
ccf17808b6 Merge pull request #3258 from markalle/pr/symbol_name_pollution
symbol name pollution
2017-07-12 16:19:25 -05:00
Artem Polyakov
832f1b03a4 Merge pull request #3790 from artpol84/orte/iof_sbatch
orte/iof: Address the case when output is a regular file
2017-07-12 09:38:01 -05:00
Gilles Gouaillardet
626e94b689 oob/tcp: make mca_oob_tcp_msg_type_t an uint8_t
so no conversion is required when heterogeneous mode is enabled

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-07-12 10:27:45 +09:00
Mark Allen
552216f9ba scripted symbol name change (ompi_ prefix)
Passed the below set of symbols into a script that added ompi_ to them all.

Note that if processing a symbol named "foo" the script turns
    foo  into  ompi_foo
but doesn't turn
    foobar  into  ompi_foobar

But beyond that the script is blind to C syntax, so it hits strings and
comments etc as well as vars/functions.

    coll_base_comm_get_reqs
    comm_allgather_pml
    comm_allreduce_pml
    comm_bcast_pml
    fcoll_base_coll_allgather_array
    fcoll_base_coll_allgatherv_array
    fcoll_base_coll_bcast_array
    fcoll_base_coll_gather_array
    fcoll_base_coll_gatherv_array
    fcoll_base_coll_scatterv_array
    fcoll_base_sort_iovec
    mpit_big_lock
    mpit_init_count
    mpit_lock
    mpit_unlock
    netpatterns_base_err
    netpatterns_base_verbose
    netpatterns_cleanup_narray_knomial_tree
    netpatterns_cleanup_recursive_doubling_tree_node
    netpatterns_cleanup_recursive_knomial_allgather_tree_node
    netpatterns_cleanup_recursive_knomial_tree_node
    netpatterns_init
    netpatterns_register_mca_params
    netpatterns_setup_multinomial_tree
    netpatterns_setup_narray_knomial_tree
    netpatterns_setup_narray_tree
    netpatterns_setup_narray_tree_contigous_ranks
    netpatterns_setup_recursive_doubling_n_tree_node
    netpatterns_setup_recursive_doubling_tree_node
    netpatterns_setup_recursive_knomial_allgather_tree_node
    netpatterns_setup_recursive_knomial_tree_node
    pml_v_output_close
    pml_v_output_open
    intercept_extra_state_t
    odls_base_default_wait_local_proc
    _event_debug_mode_on
    _evthread_cond_fns
    _evthread_id_fn
    _evthread_lock_debugging_enabled
    _evthread_lock_fns
    cmd_line_option_t
    cmd_line_param_t
    crs_base_self_checkpoint_fn
    crs_base_self_continue_fn
    crs_base_self_restart_fn
    event_enable_debug_output
    event_global_current_base_
    event_module_include
    eventops
    sync_wait_mt
    trigger_user_inc_callback
    var_type_names
    var_type_sizes

Signed-off-by: Mark Allen <markalle@us.ibm.com>
2017-07-11 02:13:23 -04:00
Mark Allen
efc25168cd symbol name pollution: making some vars static
As part of addressing symbol name pollution, I'm switching a few
vars/functions to static.

Signed-off-by: Mark Allen <markalle@us.ibm.com>
2017-07-11 02:13:22 -04:00
Gilles Gouaillardet
823382f5d7 plm/base: do not abort when configure'd with --enable-heterogeneous
and a mix of BE/LE is detected

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-07-07 10:43:54 +09:00
Ralph Castain
2a580fa71e Merge pull request #3801 from rhc54/topic/hetero
Detect that we have a mix of BE/LE in the system
2017-07-06 15:29:06 -07:00
Ralph Castain
8979bfe71e Silence Coverity warnings
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-07-06 06:07:28 -07:00
anandhi
793ebc272e When opening conduit, checking for the transport preference in below order -
(1) rml_ofi_transports mca parameter.  This parameter should have the list of transports (currently ethernet,fabric are valid)
    fabric is higher priority if provided.
(2) ORTE_RML_TRANSPORT_TYPE key with values "ethernet" or "fabric". "fabric" is higher priority.
If specific provider is required use ORTE_RML_OFI_PROV_NAME key with values "socket" or "OPA" or any other supported in system.

	modified:   ../orte/mca/rml/ofi/rml_ofi.h
	modified:   ../orte/mca/rml/ofi/rml_ofi_component.c
	modified:   ../orte/mca/rml/ofi/rml_ofi_send.c

On send_msg choose the provider on local and peer to follow below rules -
1. if the user specified the transport for this conduit (even giving us a prioritized list of candidates), then the one we selected is the _only_ one we will use. If the remote peer has a matching endpoint, then we use it - otherwise, we error out

2. if the user didn't specify a transport, then we look for matches against _all_ of our available transports, starting with fabric and then going to Ethernet, taking the first one that matches.

3. if we can't find any match, then we error out

	modified:   ../orte/mca/rml/ofi/rml_ofi.h
	modified:   ../orte/mca/rml/ofi/rml_ofi_component.c
	modified:   ../orte/mca/rml/ofi/rml_ofi_send.c

send_msg() -> Fixed case when the local provider chosen at time of opening conduit
is not present in peer (destination) node
	modified:   ../orte/mca/rml/ofi/rml_ofi.h
	modified:   ../orte/mca/rml/ofi/rml_ofi_send.c

When opening conduit, checking for the transport preference in below order -

(1) rml_ofi_transports mca parameter.  This parameter should have the list of transports (currently ethernet,fabric are valid)
    fabric is higher priority if provided.
(2) ORTE_RML_TRANSPORT_TYPE key with values "ethernet" or "fabric". "fabric" is higher priority.
If specific provider is required use ORTE_RML_OFI_PROV_NAME key with values "socket" or "OPA" or any other supported in system.

	modified:   ../orte/mca/rml/ofi/rml_ofi.h
	modified:   ../orte/mca/rml/ofi/rml_ofi_component.c
	modified:   ../orte/mca/rml/ofi/rml_ofi_send.c

On send_msg choose the provider on local and peer to follow below rules -
1. if the user specified the transport for this conduit (even giving us a prioritized list of candidates), then the one we selected is the _only_ one we will use. If the remote peer has a matching endpoint, then we use it - otherwise, we error out

2. if the user didn't specify a transport, then we look for matches against _all_ of our available transports, starting with fabric and then going to Ethernet, taking the first one that matches.

3. if we can't find any match, then we error out

	modified:   ../orte/mca/rml/ofi/rml_ofi.h
	modified:   ../orte/mca/rml/ofi/rml_ofi_component.c
	modified:   ../orte/mca/rml/ofi/rml_ofi_send.c

send_msg() -> Fixed case when the local provider chosen at time of opening conduit
is not present in peer (destination) node
	modified:   ../orte/mca/rml/ofi/rml_ofi.h
	modified:   ../orte/mca/rml/ofi/rml_ofi_send.c

Signed-off-by: Anandhi Jayakumar <anandhi.s.jayakumar@intel.com>
2017-07-05 15:40:14 -07:00
Ralph Castain
2753f53e6d Detect that we have a mix of BE/LE in the system, provide a warning that OMPI doesn't currently support this environment, and error out
Fixes #2817

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-07-03 15:47:05 -07:00
Artem Polyakov
374c824a5c orte/iof: Generalize the fix related to always-ready fds
Reference: https://bugzilla.kernel.org/show_bug.cgi?id=15272.
Work with both stdin/stdout fds that are known to be always
ready using libevent timers.
Such fds can not be effectively used with non-blocking I/O
functions like epoll, poll, select:
- for poll/select the event will be triggered immediately;
- for epoll `epoll_ctl` will reject an attempt to add this
fd to the working set.

Reference: http://www.wangafu.net/~nickm/libevent-book/Ref4_event.html
Libevent suggests to use timers over event_active for the
reasons provided by the link above.

Signed-off-by: Artem Polyakov <artpol84@gmail.com>
2017-07-01 02:24:14 +07:00
Artem Polyakov
d9ad918a14 orte/iof: Address the case when output is a regular file
Regular files are always write-ready, so non-blocking I/O does not
give any benefits for them.
More than that - if libevent is using "epoll" to track fd events,
epoll_ctl will refuse attempt to add an fd pointing to a regular
file descriptor with EPERM.
This fix checks the object referenced by fd and avoids event_add
using event_active instead.

In the original configuration that uncovered this issue "epoll"
was used in libevent, it was triggering the following warning
message:
"[warn] Epoll ADD(1) on fd 0 failed.  Old events were 0; read
change was 1 (add); write change was 0 (none): Operation not
permitted"
And the side effect was accumulation of all output in mpirun
memory and actually writing it only at mpirun exit.

Signed-off-by: Artem Polyakov <artpol84@gmail.com>
2017-07-01 02:24:14 +07:00
Ralph Castain
7cbea77238 Merge pull request #3778 from rhc54/topic/warn
Attempt to detect when we are direct-launched without the necessary P…
2017-06-29 16:53:12 -07:00
Ralph Castain
85f8eb4c6b Stop all progress threads prior to releasing the peer objects to avoid a race condition whereby a lost connection could be reported after a peer object was freed and before the threads were stopped.
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-29 15:48:18 -07:00
Ralph Castain
bd4a6fee22 Attempt to detect when we are direct-launched without the necessary PMI support, and thus are incorrectly identified as being "singleton". Advise the user on the required PMI(x) support and error out.
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-29 15:26:53 -07:00
Ralph Castain
9178219e6b Deregister event handlers only on final call to finalize. Ensure we pass PMIx mca params
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-28 15:00:43 -07:00
Ralph Castain
c6c0258cd8 Need to signal -pgrp to get to all members of a process group.
Thanks to Ted Sussman for the report and patience in tracking it down

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-27 12:10:34 -07:00
Ralph Castain
8a4565874e Enable ORTE to continue running when a node fails - user takes responsibility for zombies. Minor cleanup to orte-clean
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-27 09:05:26 -07:00
Ralph Castain
6e2778ad3b Silence coverity warnings, correctly transfer the endpoint blob bytes
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-26 08:32:06 -07:00
Ralph Castain
9dad3f7cbf Add the modex code to combine all info from local providers into a single modex send, and then retrieve them on recv
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-25 07:24:29 -07:00
Ralph Castain
f4411c4393 Enable use of OFI fabrics for launch and other collective operations. Update the PMIx repo to the latest master to get the required support for the server to "push" modex info, and to retrieve all its own "modex" values for sending back to mpirun. Have mpirun cache them in its local modex hash as OFI goes point-to-point direct and doesn't route - so the remote daemons don't need a copy of this connection info.
Remove the opal_ignore from the RML/OFI component, but disable that component unless the user specifically requests it via the "rml_ofi_desired=1" MCA param. This will let us test compile in various environments without interfering with operations while we continue to debug

Fix an error when computing the number of infos during server init

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-23 19:57:21 -07:00
Ralph Castain
38636f4f0a Ensure we properly cleanup on termination, including when terminating due to ctrl-c
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-21 06:33:37 -07:00
Ralph Castain
501ba8faad Merge pull request #3704 from rhc54/topic/signal
Control distribution of signals to children vs grandchildren
2017-06-20 11:11:43 -07:00
Ralph Castain
952726c121 Update to latest PMIx master - equivalent to 2.0rc2. Update the thread support in the opal/pmix framework to protect the framework-level structures.
This now passes the loop test, and so we believe it resolves the random hangs in finalize.

Changes in PMIx master that are included here:

* Fixed a bug in the PMIx_Get logic
* Fixed self-notification procedure
* Made pmix_output functions thread safe
* Fixed a number of thread safety issues
* Updated configury to use 'uname -n' when hostname is unavailable

Work on cleaning up the event handler thread safety problem
Rarely used functions, but protect them anyway
Fix the last part of the intercomm problem
Ensure we don't cover any PMIx calls with the framework-level lock.
Protect against NULL argv comm_spawn

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-20 09:02:15 -07:00
Ralph Castain
206aec6083 By default, apply signals to all direct children _and_ any children they might have spawned (so long as they remain in the same process group). Provide an MCA param (odls_base_signal_direct_children_only) to indicate that the signal is to go _only_ to our direct children, and not be delivered to any children spawned by those procs.
Refs https://www.mail-archive.com/users@lists.open-mpi.org/msg31221.html

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-15 12:26:11 -07:00
Ralph Castain
8f09929469 Fix rank-file mapper launch by correctly setting up the remote map from the provided data
Put a simple protection for the case where procs fail while we are trying to deregister handlers

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-15 08:33:29 -07:00
Ralph Castain
8afa1433b8 Only set the "bound" flag if we wre actually bound
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-14 13:22:01 -07:00
Ralph Castain
1f0f03b45b Print a better error message when srun isn't found in the path. Ensure we don't segfault if -host specifies a node not included in the allocation
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-09 07:46:47 -07:00
Ralph Castain
7b39f19f60 Fix the backend mapper algorithm for comm_spawn. The front and back ends need to get the nodes into the job map in the same order so that the ranking algorithms will reach the same results
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-08 08:00:52 -07:00
Ralph Castain
81ab79f311 Ensure the orted doesn't go into an infinite loop during force-terminate
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-07 21:44:49 -07:00
Ralph Castain
919d7fcf49 We cannot use OFI to determine when daemons can finalize as we don't see the "sockets" go away. So always use the OOB for the mgmt conduit - this provides the necessary termination signal AND ensures that IOF and other mgmt messages go solely across TCP.
Cleanup the way we look for matching OFI addresses by using the opal_net_samenetwork helper function. This now works for multi-network environments, but only using the socket provider

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-07 13:51:30 -07:00
Ralph Castain
bd1793ad17 Get the pmix/ext2x component to work. Fix a minor problem in the libevent external component.
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-06 20:06:28 -07:00
Ralph Castain
93cf3c7203 Update OPAL and ORTE for thread safety
(I swear, if I look this over one more time, I'll puke)

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-06 12:30:57 -07:00
Ralph Castain
a28eaf914a Silence warnings when terminating
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-05 13:53:07 -07:00
Ralph Castain
8f526968c2 Do not hang if we cannot relay messages. Eliminate extra error log message
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-05 06:35:19 -07:00
Ralph Castain
51b4078b70 Merge pull request #3648 from rhc54/topic/ofi
Clean up the conduit open code so we return detectable errors when co…
2017-06-02 18:08:55 -07:00
Ralph Castain
e884cbf5f5 Even though the ofi component doesn't do any routing itself, the rest of the code base (e.g., grpcomm) needs to know what routing module this component is using. So set it to the "direct" module, and don't allow ofi to be used if that module isn't available.
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-02 15:47:25 -07:00
Ralph Castain
ba9a6078c2 Add ability to select transport, and only compare the first one in the conduit list for a match. This lets you select which conduit to use for OFI - if you set "-mca rml_ofi_transports ethernet" you'll pickup the mgmt conduit. If you set "-mca rml_ofi_transports fabric", you'll get the coll conduit
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-02 14:31:23 -07:00
Jeff Squyres
af9565ec25 ess: add missing <signal.h> header
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2017-06-02 14:11:40 -07:00
Ralph Castain
066d5eedce Shift the signal forwarding code to ess/base so it can be available to more than just the hnp component. Extend the slurm component to use it so that any signals given directly to the daemons by their slurmstepd get forwarded to their local clients
Check for NULL

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-02 10:59:14 -07:00
Ralph Castain
6b3bbd30c5 Clean up the conduit open code so we return detectable errors when conduit not opened.
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-02 10:40:51 -07:00
Ralph Castain
2ab4f93f6a Instead of "forced_terminate" just quietly causing the daemon to disappear, let's at least attempt to let the user know where the problem occurred.
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-02 08:28:16 -07:00
anandhi
6ddb487744 Cleaned up the send_msg(), moved checking for send to self into the send_nb()
and send_buffer_nb()
	modified:   orte/mca/rml/ofi/rml_ofi_send.c

Signed-off-by: Anandhi Jayakumar <anandhi.s.jayakumar@intel.com>
2017-06-01 17:50:54 -07:00
Ralph Castain
9d6b929894 Fix uninitialized variable. Set exit codes for failed launch so we get pretty error messages
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-05-31 07:38:37 -07:00
Ralph Castain
26e7515a5e Don't sweat the "sync" settings on file descriptors as those flags aren't apparently fully portable
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-05-30 20:37:26 -07:00
Ralph Castain
5d990b557c Reorg ordering so that bare executable names also are found
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-05-30 15:58:55 -07:00
Ralph Castain
321abfc8c6 Fix cwd and preload-binary options
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-05-30 14:07:22 -07:00
Ralph Castain
ad108ba44d Fix the DVM
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-05-30 11:42:42 -07:00
Ralph Castain
9a8811a246 Ensure that data from a job that was stored in ompi-server is purged once that job completes. Cleanup a few typos. Silence a Coverity warning
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-05-30 09:43:01 -07:00
Ralph Castain
f3ab326b4a Add some debug code for detecting leaking file descriptors. At the end of each job (and if MCA param is set), have each daemon compute the number of open fds and their characteristics and print a summary
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-05-29 11:25:20 -07:00
Ralph Castain
87201a80ff Silence coverity warnings
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-05-27 11:45:53 -07:00
Ralph Castain
8c2a06477c Fix ompi-server operations
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-05-26 08:57:55 -07:00
Ralph Castain
657e701c65 Add debug verbosity to the orte data server and pmix pub/lookup functions
Start updating the various mappers to the new procedure. Remove the stale lama component as it is now very out-of-date. Bring round_robin and PPR online, and modify the mindist component (but cannot test/debug it).

Remove unneeded test

Fix memory corruption by re-initializing variable to NULL in loop

Resolve the race condition identified by @ggouaillardet by resetting the
mapped flag within the same event where it was set. There is no need to
retain the flag beyond that point as it isn't used again.

Add a new job attribute ORTE_JOB_FULLY_DESCRIBED to indicate that all the job information (including locations and binding) is included in the launch message. Thus, the backend daemons do not need to do any map computation for the job. Use this for the seq, rankfile, and mindist mappers until someone decides to update them.

Note that this will maintain functionality, but means that users of those three mappers will see large launch messages and less performant scaling than those using the other mappers.

Have the mindist module add procs to the job's proc array as it is a fully described module

Protect the hnp-not-in-allocation case

Per path suggested by Gilles - protect the HNP node when it gets added in the absence of any other allocation or hostfile

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-05-25 18:41:27 -07:00
Gilles Gouaillardet
22ab73cb1a Merge pull request #3471 from ggouaillardet/topic/execve_cmd
odls: fix handling of the orte fork agent
2017-05-15 15:07:39 +09:00
Ralph Castain
b527c40dae Remove debug
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-05-12 12:41:36 -07:00
Ralph Castain
23af6c9d02 Merge pull request #3519 from rhc54/topic/nolocal
Fix --nolocal
2017-05-12 09:57:52 -07:00
Ralph Castain
45bbd598c1 Fix --nolocal
Fix the --nolocal option by ensuring we always check/remove the HNP from the list of available nodes if the flag is set
Ensure that the HNP node is included as available when nothing else is given

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-05-12 09:03:26 -07:00
Ralph Castain
29e083bffd Fix total_slots_allocated computation
On unmanaged allocations, we need to update the total_slots_allocated once the daemons have been launched and "discovered" their topology

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-05-12 08:21:52 -07:00
Ralph Castain
9164afbb08 When a daemon force-terminates, we don't get the show_help message it was trying to send because the message is at a lower priority than the termination event. Resolve this by putting the oob in its own progress thread. Also, use only that one thread by default - if someone needs more progress threads in the OOB, they can use the MCA param to get them.
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-05-11 06:52:55 -07:00
Ralph Castain
911961ee21 Sigh - remove debug
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-05-10 11:26:42 -07:00
Ralph Castain
2d93d15aa7 Merge pull request #3502 from rhc54/topic/cisco
Fix nidmap computation to deal with hetero nodes
2017-05-10 11:21:12 -07:00
Ralph Castain
50646b07ce Update the RML OFI by copying the updated files from @anandhis branch
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-05-10 09:17:06 -07:00
Ralph Castain
442e307a6e Fix the nidmap computation to deal with hetero nodes
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-05-10 08:43:28 -07:00
Ralph Castain
ef0e0171c9 Implement the changes required to support cross-library coordination. Update PMIx to support intra-process notifications and ensure that we always notify ourselves for events. Add a new ompi/interlib directory where cross-lib coordination code can go, and put the code to declare ourselves there (called from ompi_mpi_init.c).
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-05-08 10:04:50 -07:00
Gilles Gouaillardet
16fc0996e6 odls: fix handling of the orte fork agent
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-05-08 16:07:13 +09:00
Ralph Castain
180809f2ef Do not pass topologies during tree spawn of daemons as there is no way the HNP can know the backend topologies at that point. Any needed topologies will be sent along with the launch_apps command
Do not pass param file MCA params if the user has requested that no param files be read - required when trying to avoid launch time penalties from large numbers of processes reading default param files. The daemon picks them up and passes them along anyway, so it isn't clear what value we gain from having them all read the defaults

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-05-07 21:14:43 -07:00
Ralph Castain
a143800bce Enable full operations under SLURM on Cray systems by co-locating a daemon with mpirun when mpirun is executing on a compute node in that environment. This allows local application procs to inherit their security credential from the daemon as it will have been launched via SLURM
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-05-06 19:08:50 -07:00
Ralph Castain
3a434d75d6 By default, use the system default snd/recv buffer sizes
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-05-05 09:58:05 -07:00
Gilles Gouaillardet
57b4144e57 orte: use compression for ORTE_DAEMON_REPORT_TOPOLOGY_CMD answer
Refs open-mpi/ompi#3414

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-04-27 17:21:59 +09:00
Gilles Gouaillardet
49cd40b2df compress the topology sent by the first orted
Refs open-mpi/ompi#3414

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-04-27 16:20:11 +09:00
Gilles Gouaillardet
c38ef3d46f oob/tcp: fix short writev handling in send_msg()
Fixes open-mpi/ompi#3414

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-04-27 10:24:38 +09:00
Howard Pritchard
462342d148 Merge pull request #3311 from hppritcha/topic/libfabric_moves_to_ofi
common/libfabric: move libfabric to ofi
2017-04-21 07:50:38 -06:00
Howard Pritchard
841192645b common/libfabric: move libfabric to ofi
This PR renames the common library for OFI libfabric from
libfabric to ofi.  There are a number of reasons this
is good to do:

1) its shorter and replaces 9 characters with three for
   function names for what may eventually be a fairly extensive interface
2) OFI is the term used for MTL and RML components that use
   the OFI libfabric interface
3) A planned OSC component will also use the OFI term.
4) Other HPC libraries that can use OFI libfabric tend to use
   the term "ofi" internally and also in their configure options
   relevant to OFI libfabric (i.e. MPICH/CH4, Intel MPI, Sandia SHMEM)

There seem to be comments in places in the Open MPI source
code that indicate that this common library will be going away.
Far from it as we will want to be able to share things like
AV objects between OMPI and possibly OSHMEM components that
use the OFI libfabric interface.

This PR also adds a synonym to the --with-libfabric(-libdir)
configury options: --with-ofi and with-ofi-libdir.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2017-04-20 13:07:16 -06:00
Nathaniel Graham
34b4aeb17f Merge pull request #3339 from nrgraham23/mpirun_help_improvements
Additional mpirun --help changes
2017-04-19 14:05:07 -06:00
Nathaniel Graham
01312b2f90 Additional mpirun --help changes
This commit recategorizes several mpirun arguments,
and moves the information for mpirun --help arguments
to the bottom of the general help message.  I also
added the OPAL_CMD_LINE_OTYPE field to two commands
that were missed initially because they were not
in the same area as the others.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
2017-04-19 11:43:45 -06:00
Howard Pritchard
3918b7a796 Merge pull request #3213 from hppritcha/topic/remove_loadleveer
orte/ras: remove loadleveler support
2017-04-18 09:18:54 -06:00
Ralph Castain
bb1aaa3286 Use the node index to compare to daemon vpid when identifying procs to bind
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-04-14 02:37:25 -07:00
Ralph Castain
67156556ce On behalf of Josh, ensure we flag that the child is no longer alive since we are killing it with SIGKILL
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-04-13 21:07:26 -07:00
Ralph Castain
1585854335 Minor coverity cleanups
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-04-12 19:31:35 -07:00
Ralph Castain
0500cc1c66 Update the debugger launch code to reflect the new backend mapping method.
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-04-12 13:31:18 -07:00
Ralph Castain
539f71d0cc Merge pull request #3310 from marksantcroos/fix/alps_wdir
Bring ALPS ODLS up to par regarding wdir.
2017-04-11 17:30:04 -07:00
Mark Santcroos
27fa8aabd6 Hardcode basename to "orted" for error reporting.
Signed-off-by: Mark Santcroos <mark.santcroos@rutgers.edu>
2017-04-11 18:59:23 -04:00
Mark Santcroos
af3a6e1a29 Verify that the chdir(2) succeeds.
Signed-off-by: Mark Santcroos <mark.santcroos@rutgers.edu>
2017-04-12 00:37:37 +02:00
Ralph Castain
97e38e6d84 Move a free to a little later in case the verbose output needs it
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-04-11 11:21:12 -07:00
Mark Santcroos
36ac54b5d8 Bring ALPS ODLS up to par regarding wdir.
Signed-off-by: Mark Santcroos <mark.santcroos@rutgers.edu>
2017-04-10 08:15:07 -04:00
Ralph Castain
95ae0d1df3 Cleanup timing macros for portability across compilers. Rename the --enable-timing configure option to be --enable-pmix-timing so it doesn't pickup external timing requests. Remove a stale function reference in PMIx so it can compile with timing enabled.
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-04-10 12:56:38 +06:00
Artem Polyakov
482d7c9322 opal/timing: remove RML timings
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
2017-04-07 21:16:21 +06:00
Artem Polyakov
79100de014 opal/timing: Remove oob tracing
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
2017-04-07 21:16:21 +06:00
Ralph Castain
b33b4607df Correctly identify the source of the event when notifying of abnormal termination by a process
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-04-06 20:50:38 -07:00
Ralph Castain
a29ca2bb0d Enable slurm operations on Cray with constraints
Cleanup some errors in the nidmap code that caused us to send unnecessary topologies

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-04-06 08:58:06 -07:00
Ralph Castain
40ca43e157 Set the PARENT vpid for direct routed module
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-04-04 19:03:28 -07:00
Ralph Castain
9cb18b8348 Merge pull request #3280 from rhc54/topic/dvm
Fix the DVM by ensuring that all nodes, even those that didn't partic…
2017-04-04 18:15:33 -07:00
Ralph Castain
74863a0ea4 Fix the DVM by ensuring that all nodes, even those that didn't participate (i.e., didn't have any local children) in a job, clean up all resources associated with that job upon its completion. With the advent of backend distributed mapping, nodes that weren't part of the job would still allocate resources on other nodes - and then start from that point when mapping the next job. This change ensures that all daemons start from the same point each time.
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-04-04 17:31:38 -07:00
Nathaniel Graham
7063f3021f Merge pull request #3231 from nrgraham23/revamp_mpirun_help
mpirun --help output revamp
2017-04-04 12:32:20 -06:00
Nathaniel Graham
19e5d15491 mpirun --help output revamp
This commit modifies the output from the mpirun --help
command.  The options have been split into groups, to
make the output smaller and more readable.  The groups
are: general, debug, output, input, mapping, ranking,
binding, devel, compatibility, launch, dvm, and
unsupported. There is also a special "full" command
that can be used to get the old behaviour of printing
out all of the options.  Unsupported options may only
be seen with this full output.

This commit also adds a special case for the help
argument.  It makes it possible for the user to
enter 0 or 1 arguments instead of having to always
enter an argument.  This defaults to printing out
the "general" help options so the user can then
see what help arguments there are.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
2017-04-04 10:59:32 -06:00
Ralph Castain
393c4536eb Remove stale code line
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-04-04 08:13:15 -07:00
Ralph Castain
92c996487c Update how we pass the node regex so we pass _all_ nodes, even those without daemons. This allows the backend daemons to form a complete picture of the allocation. Include info on which nodes have daemons on them, and populate that info on the backend as well.
Set the daemons' state to "running" and mark them as "alive" by default when constructing the nidmap

Get the DVM running again

Fix direct modex by eliminating race condition caused by releasing data while sending it

Up the size limit before compressing

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-04-03 19:25:15 -07:00
Ralph Castain
583dbe954c Silence coverity dead-code warning
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-03-26 20:36:43 -07:00
Ralph Castain
ecc8000136 Silence a flood of warnings when compiling with gcc on Cray
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-03-24 13:37:11 -06:00
Ralph Castain
35f817911e Fix coverity issues
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-03-24 08:09:46 -07:00
Ralph Castain
ea84a53faa Merge pull request #3218 from rhc54/topic/pmix2
Update to include the PMIx 2.0 APIs for monitoring and job control.
2017-03-21 20:11:10 -07:00
Ralph Castain
d645557fa0 Update to include the PMIx 2.0 APIs for monitoring and job control. Include required integration, but leave the monitors off for now. Move the sensor framework out of ORTE as it is being absorbed into PMIx
Fix typo and silence warnings

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-03-21 17:47:08 -07:00
Ralph Castain
10d401b6ec Merge pull request #3217 from rhc54/topic/wdirs
Resolve a race condition for setting our working directory when fork/exec'ing application procs.
2017-03-21 17:39:54 -07:00
Ralph Castain
74fd2c30af Cleanup alps odls module
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-03-21 17:41:11 -06:00
Ralph Castain
f8e1e3bed3 Ensure we properly exit with error if we cannot map the job
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-03-21 15:15:32 -07:00
Ralph Castain
75684dc260 Resolve a race condition for setting our working directory when fork/exec'ing application procs. We have to ensure we do it after the fork occurs since we want to use multiple threads in the odls. Otherwise, the different threads are bouncing the entire process around.
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-03-21 13:54:03 -07:00
Howard Pritchard
9350aa5d71 orte/ras: remove loadleveler support
Remove loadleveler as it is obsolescent and is no longer supported.

Fixes #3167

We'll wait for final check of whether or not loadleveler even
compiles/functions before merging this.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2017-03-21 10:32:28 -06:00
Ralph Castain
dc85e7fde7 Provide a little more help on the error messages when an executable isn't found so we have some better idea where we were looking for it. Don't double-report such errors. Ensure the ORTE_ERROR_NAME doesn't get a NULL back for the string name of an error code as that might cause some systems to segfault
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-03-17 09:54:37 -07:00
Howard Pritchard
1709febdea Merge pull request #3166 from hppritcha/topic/swat_state_orted_comp_warning
ORTED: swat another compiler warning
2017-03-15 08:40:59 -06:00
Ralph Castain
96d7d10c1d Merge pull request #3170 from rhc54/topic/reg
Ensure the backend daemons know if we are in a managed allocation and if the HNP was included in the allocation
2017-03-14 12:48:09 -07:00
Ralph Castain
61a71e25ef Ensure the backend daemons know if we are in a managed allocation and if
the HNP was included in the allocation

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-03-14 10:06:43 -07:00
Howard Pritchard
5daaf7f3fd ORTED: swat another compiler warning
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2017-03-14 08:41:51 -06:00
Ralph Castain
52c9e631de Silence Coverity warnings
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-03-14 07:30:42 -07:00
Ralph Castain
b1a01d77ae Update the TM module to support regex passing
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-03-13 21:50:40 -07:00
Ralph Castain
bb574a41df Update launchers to get correct regex
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-03-13 11:21:44 -07:00
Ralph Castain
105fb152e1 Silence Coverity warnings
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-03-13 08:38:51 -07:00
Ralph Castain
b9f5cab710 Add a minor debug statement
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-03-12 18:15:44 -07:00
Gilles Gouaillardet
23d44a5284 sensor/base: initialize orte_sensor_base global variable
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-03-13 09:39:43 +09:00
Ralph Castain
6d6bc9bd07 Update alps module to new APIs
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-03-12 09:43:07 -07:00
Ralph Castain
70591bf4dc Enable parallel fork/exec of local procs by providing the option of multiple odls progress threads
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-03-11 20:48:04 -08:00
Ralph Castain
ab50665222 Restore sensor framework
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-03-11 17:46:32 -08:00
Ralph Castain
c6bc3ccb76 Sync to latest PMIx master and PMIx reference server
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-03-11 12:50:38 -08:00
Howard Pritchard
f8183f71f7 rmaps/base: swat compiler warning
gcc was complaining about variables possibly used uninitialized

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2017-03-09 14:30:06 -06:00
Ralph Castain
48fc339718 Create an alternative mapping method that pushes responsibility
onto the backend daemons. By default, let mpirun only pack the app_context
info and send that to the backend daemons where the mapping will
be done. This significantly reduces the computational time on mpirun as it isn't
running up/down the topology tree computing thousands of binding
locations, and it reduces the launch message to a very small number of
bytes.

When running -novm, fall back to the old way of doing things
where mpirun computes the entire map and binding, and then sends
the full info to the backend daemon.

Add a new cmd line option/mca param --fwd-mpirun-port that allows
mpirun to dynamically select a port, but then passes that back to
all the other daemons so they will use that port as a static port
for their own wireup. In this mode, we no longer "phone home" directly
to mpirun, but instead use the static port to wireup at daemon
start. We then use the routing tree to rollup the initial
launch report, and limit the number of open sockets on mpirun's node.

Update ras simulator to track the new nidmap code

Cleanup some bugs in the nidmap regex code, and enhance the error message for not enough slots to include the host on which the problem is found.

Update gadget platform file

Initialize the range count when starting a new range

Fix the no-np case in managed allocation

Ensure DVM node usage gets cleaned up after each job

Update scaling.pl script to use --fwd-mpirun-port. Pre-connect the daemon to its parent during launch while we are otherwise waiting for the daemon's children to send their "phone home" rollup messages

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-03-07 20:43:12 -08:00
Ralph Castain
83199979ba Remove the stale opal/sec framework
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-03-02 15:41:56 -08:00
Ralph Castain
c757c3d260 Fix double-free in rml/ofi shutdown
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-03-01 11:53:46 -08:00
Jeff Squyres
fec519a793 hwloc: rename opal/mca/hwloc/hwloc.h -> hwloc-internal.h
Per a prior commit, the presence of "hwloc.h" can cause ambiguity when
using --with-hwloc=external (i.e., whether to include
opal/mca/hwloc/hwloc.h or whether to include the system-installed
hwloc.h).

This commit:

1. Renames opal/mca/hwloc/hwloc.h to hwloc-internal.h.
2. Adds opal/mca/hwloc/autogen.options to tell autogen.pl to expect to
   find hwloc-internal.h (instead of hwloc.h) in opal/mca/hwloc.
3. s@opal/mca/hwloc/hwloc.h@opal/mca/hwloc/hwloc-internal.h@g in the
   rest of the code base.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2017-02-28 07:48:42 -08:00
Ralph Castain
f054261590 Merge pull request #3027 from naughtont3/tjn-envvar-dvmuri
dvm: Add envvar 'ORTE_HNP_DVM_URI' to schizo:ompi
2017-02-27 06:56:44 -08:00
Ralph Castain
efc3a98ea6 Merge pull request #3031 from rhc54/topic/ofi
Add CPPFLAGS to build of rml/ofi component.
2017-02-25 11:23:03 -08:00
Ralph Castain
9f8f7f3189 Add CPPFLAGS to build of rml/ofi component.
Fix finalize to ensure we only destruct the msg queue list once.
Update platform file

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-02-25 09:17:41 -08:00
Thomas Naughton
006be92df5 dvm: Add envvar 'ORTE_HNP_DVM_URI' to schizo:ompi
Add ability to pass DVM URI purely via environment
to simplify invocation from command-line (e.g., start dvm,
export URI, mpirun w/o needing to add `--hnp` arg).
If user passes both envvar *and* cmdline, the cmdline wins.

Signed-off-by: Thomas Naughton <naughtont@ornl.gov>
2017-02-24 16:55:32 -05:00
Thomas Naughton
beb5b250bf orte dvm: debug fix for DVM early quit
Ensure that job errors do not cause the DVM to fail unless the failed job is the DVM itself.

Refs #2987, with improvements from Ralph

Signed-off-by: Thomas Naughton <naughtont@ornl.gov>
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-02-23 10:17:53 -05:00
Ralph Castain
22c88f5ab5 Fix launch_id matching of -hosts
Need to check the entire value instead of just the last N digits. Otherwise, "-host 15" will match nid0015, nid0115, and any other launch id ending in 15

It appears strtol can return either a NULL or a zero-length string, so check for both cases

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-02-20 07:03:53 -08:00
Ralph Castain
af7e2cc33b Merge pull request #3004 from jjhursey/topic/oob-tcp-timeout
oob/tcp: Adjust TCP keepalive default values
2017-02-19 14:28:01 -08:00
Ralph Castain
95bfc7b7c6 Merge pull request #2991 from jjhursey/fix/ibm/errmgr-help-msg
orte/errmgr: Improve help message on connection lost
2017-02-17 11:34:18 -08:00
Joshua Hursey
df0f8e95cd oob/tcp: Adjust TCP keepalive default values
Signed-off-by: Joshua Hursey <jhursey@us.ibm.com>
2017-02-17 11:02:25 -06:00
Howard Pritchard
b272f87926 Merge pull request #2968 from hjelmn/pmix_cray
pmix/cray: performance improvements and cleanup
2017-02-16 11:41:59 -07:00
Ralph Castain
0ae873de5c Fix a bug where we failed to compute #procs for nperXXX directives, thus resulting in an incorrect default binding
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-02-15 16:32:24 -08:00
Ralph Castain
223495325d Fix binding policy bug and support pe=1 modifier
Allow someone to specify the "pe=N" modifier to a mapping policy when N=1. This equates to just "bind-to core", but helps people who use a script to set the PE policy. Fix a bug where setting the binding policy left a lingering "if-supported" flag that shouldn't be there.

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-02-15 14:55:17 -08:00
Joshua Hursey
c452f68495 orte/errmgr: Improve help message on connection lost
Signed-off-by: Joshua Hursey <jhursey@us.ibm.com>
2017-02-15 16:36:00 -05:00
Ralph Castain
68b53e2179 Fix comm_spawn by registering nspace info only when needed - either when we have local procs, or when job-level info is required by connecting jobs
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-02-14 19:47:56 -08:00
Josh Hursey
a17b547430 Merge pull request #2957 from jjhursey/topic/ibm/rsh-sigint-fix
plm/rsh: Fix signal handling for rsh launcher
2017-02-14 15:29:00 -06:00
Nathan Hjelm
1df6bdd30e schizo/alps: set orte_bound_at_launch when launched with aprun
Set the orte_bound_at_launch MCA variable. This resolves a launch
performance bug when using aprun to launch Open MPI processes. If
this variable is not set it can take minutes longer to launch with
high ppn.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2017-02-14 11:13:48 -07:00
Joshua Hursey
843fcca03c plm/rsh: Fix signal handling for rsh launcher
* Similar to the other launchers (i.e., slurm, alps) we need to put the
   children in a separate process group to prevent SIGINT (from a CTRL-C)
   from being delivered to the whole process group and prematurely
   killing the rsh/ssh connections to the remote daemons.

Signed-off-by: Joshua Hursey <jhursey@us.ibm.com>
2017-02-14 08:54:17 -06:00
Ralph Castain
dee2d8646d Fix plm/rsh runtime check
Fix the check for rsh/ssh so we allow the check for SGE and LoadLeveler to occur if user doesn't specify their own launch agent. Fix a Coverity warning

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-02-13 16:54:03 -08:00
Nathan Hjelm
2c1980ae39 Merge pull request #2923 from hjelmn/oob_fix
oob/tcp: cleanup peers before event bases
2017-02-06 09:34:10 -07:00
Nathan Hjelm
b928a6b9ea ras/slurm: fix compile error due to missing header
On some systems this component fails to build due to the missing
netdb.h header.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2017-02-03 15:22:34 -07:00
Nathan Hjelm
1c4b735f5f oob/tcp: cleanup peers before event bases
This commit fixes an error in teardown where the event bases are town
down before the peer structures are released. This causes us to call
event_del on an invalid event base. At best this makes valgrind
complain and at worst this causes aborts or segvs.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2017-02-03 15:18:41 -07:00
Ralph Castain
b661275dba For performance, try to send the oob/tcp message a few times before dropping back into the event library
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-02-02 06:44:15 -08:00
Ralph Castain
50ca9fb66b Merge pull request #2893 from rhc54/topic/sim
Cleanup the ras simulator capability, and the relay route thru grpcomm
2017-02-01 16:17:40 -08:00
Ralph Castain
230d15f0d9 Cleanup the ras simulator capability, and the relay route thru grpcomm
direct. Don't resend wireup info if nothing has changed

Fix release of buffer

Correct the unpacking order

Fix the DVM - now minimized data transfer to it

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-02-01 15:01:58 -08:00
Ralph Castain
8bf3ac828c Correct the path to the ORTE data dir - allows master to be built with --no-ompi
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-02-01 07:30:18 -07:00
Howard Pritchard
db4039f565 ess/alps: fix problem in makefile
./autogen.pl --no-ompi doesn't work without this
fix when alps can be configured.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2017-01-31 21:56:16 -06:00
Ralph Castain
b59ae14a2a Fix static port and partial allocation operations
Fix static port wireup by recording the TCP port mpirun is using and correctly passing the regex of hosts to the daemons. Do a better job of closing sockets on failed connection attempts. Correctly identify the remote host in the associated error message.

Fix partial allocation operations by not attempting to set #slots on nodes that were not used, and thus don't have a daemon or topology assigned to them

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-01-28 10:09:44 -08:00
Ralph Castain
c803af5d3d Minor change to allow qrsh to tree spawn, if supported
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-01-27 16:34:08 -08:00
Ralph Castain
7c795f4416 If the HNP is going to request topology info, it cannot do so via a routed OOB message as the intervening daemons may not be ready. So disable routing until the VM is ready, and have daemons start routing as they receive the xcast launch msg (which includes the data they need to talk to their peers).
Do a little optimization and minimize recomputation of the routing plan.

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-01-27 15:37:16 -08:00
Ralph Castain
d672fad849 Repair rsh/ssh tree spawn
Repair rsh/ssh tree spawn by unpacking and updating the nidmap in remote_spawn.

Add more specific error messages so the cause of a messaging problem is a little clearer. Remove some stale code. Ensure we stop trying to send a message after a few times.

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-01-27 11:35:00 -08:00
Josh Hursey
2e64bf42fb Merge pull request #2810 from jjhursey/fix/ibm/stdiag-to-stdout
Extend options for stddiag routing
2017-01-26 14:29:16 -06:00
Nathan Hjelm
fe1c6bd881 Merge pull request #2840 from hjelmn/event_fix
verbs: remove extra event user increment/decrement operation
2017-01-26 07:30:24 -08:00
Ralph Castain
399de0738e Cleanup launch
Given that we only set OOB contact info from inside of events, or before we begin threaded operations (e.g., in the ess), allow set_contact_info to directly update the oob/base framework globals.

Correct the nidmap regex decompression routine.

Ensure that rank=1 daemon always sends back its topology as this is the most common use-case.

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-01-25 22:06:09 -08:00
Nathan Hjelm
9f28c0af39 verbs: remove extra event user increment/decrement operation
Since the oob and connections systems do not work the same way they
did in older versions of Open MPI these operations are no longer
necessary. At best they do nothing and at worst they hurt performance
by making us enter the event library more often in opal_progress().

Fixes #2839

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2017-01-25 18:37:06 -07:00
Ralph Castain
2f4e87eae9 Have rank=1 daemon always send its topology back as this is the most common use-case
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-01-25 09:33:11 -08:00
Jeff Squyres
230bbc597d plm base: make sure to assign "node" early enough
Make sure to assign "node" before using it in ORTE_FLAG_SET.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2017-01-25 08:02:59 -08:00
Ralph Castain
184ccc8e91 Cleanup some code so it is clear that it is executing in an event. Ensure that peer event base is properly set on incoming connections
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-01-25 06:55:11 -08:00
Gilles Gouaillardet
ef10d3fd7b orte: add missing include file
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-01-25 16:15:20 +09:00
Joshua Hursey
0e9a06d2c3 orte/iof: Add app stderr to stdout redirection at source
* Add an MCA parameter to combine stdout and stderr at the source
   - `iof_base_redirect_app_stderr_to_stdout`
 * Aids in user debugging when using libraries that mix stderr with stdout

Signed-off-by: Joshua Hursey <jhursey@us.ibm.com>
2017-01-24 16:23:48 -06:00
Joshua Hursey
dcd9801f7c orte/iof: Add orte_map_stddiag_to_stdout option
* Similar to `orte_map_stddiag_to_stderr` except it redirects `stddiag`
   to `stdout` instead of `stderr`.
 * Add protection so that the user canot supply both:
   - `orte_map_stddiag_to_stderr`
   - `orte_map_stddiag_to_stdout`

Signed-off-by: Joshua Hursey <jhursey@us.ibm.com>
2017-01-24 16:22:59 -06:00
Ralph Castain
ef86707fbe Deprecate the --slot-list paramaeter in favor of --cpu-list. Remove the --cpu-set param (mark it as deprecated) and use --cpu-list instead as it was confusing having the two params. The --cpu-list param defines the cpus to be used by procs of this job, and the binding policy will be overlayed on top of it.
Note: since the discovered cpus are filtered against this list, #slots will be set to the #cpus in the list if no slot values are given in a -host or -hostname specification.

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-01-24 13:33:22 -08:00
Ralph Castain
4e9364b9a4 Merge pull request #2794 from rhc54/topic/regs
Next step in reducing launch time
2017-01-24 03:19:57 -08:00
Ralph Castain
86ab751c5e Next step in reducing launch time: begin reducing the size of the launch message itself. Start by expressing the daemon map as a set of three regular expression strings. On an 8k cluster, this reduces the nidmap contribution from over 200kBytes to 21 bytes in size.
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-01-23 19:54:47 -08:00
Gilles Gouaillardet
0bdc594b2e rml/base: plug a memory leak in orte_rml_API_recv_cancel()
simply return when the orte event thread has gone

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-01-24 09:12:47 +09:00
Ralph Castain
a61f7bdb26 Merge pull request #2780 from rhc54/topic/conn
Ensure we properly set the "shutting down" flag so connection drops by downstream peers are properly handled.
2017-01-23 06:40:28 -08:00
Ralph Castain
e7b12913b4 Ensure we properly set the "shutting down" flag so connection drops by downstream peers are properly handled.
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-01-23 04:00:24 -08:00
Nathan Hjelm
954a4b7be3 oob/base: fix num_threads registration type
This commit fixes a bug in the registration of the num_threads MCA
variable. The variable is of type int and was being registered as
a boolean.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2017-01-22 14:02:34 -07:00
Ralph Castain
ac4fcd3f97 Ensure that oob/base level data is always accessed in the oob/base event thread. Make debruijn the default routed component
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-01-22 10:33:32 -08:00
Ralph Castain
6560617c04 Fix comm_spawn and orte-dvm by resetting all used "node mapped" flags after building the child list
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-01-22 05:55:53 -08:00
Ralph Castain
639cdd4f9d Add missing flag set to ensure nodes do not get double-added to job map.
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-01-21 20:06:50 -08:00
Ralph Castain
be3ef77739 Improve packing efficiency by raising the initial buffer size and modifying the extension code. Flag if a job map has had its nodes added so we don't have to loop repeatedly to check it.
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-01-21 14:03:19 -08:00
Ralph Castain
466cbd4d29 Rework the threading in oob/tcp so that daemons (including mpirun) use multiple progress threads to get messages out to their children, and so that the oob/base uses a separate one to setup sends. This allows the daemon cmd processor to execute in parallel with relay of messages, which significantly reduces launch times at scale
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-01-21 13:26:19 -08:00
Ralph Castain
668421b6ec Compress the xcast message if bigger than a defined size to further improve launch performance at scale
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-01-19 22:08:02 -08:00
Ralph Castain
1f46e48b94 Have mpirun and orteds activate the oob/tcp progress thread by default, leaving a way to turn it off via MCA param. Provide a method by which the add_procs command can be processed in parallel with relaying the cmd message to the next daemons down the tree.
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-01-19 18:52:58 -08:00
Ralph Castain
bb132f6d03 Merge pull request #2764 from rhc54/topic/dvm
If a tool sees the HNP it is attached to die (thereby losing connecti…
2017-01-19 15:39:30 -08:00
Ralph Castain
ca50b31de1 Merge pull request #2762 from rhc54/topic/oobfast
Speed-up the OOB/TCP communications by using writev instead of writing the header, and then separately write the body
2017-01-19 15:39:06 -08:00
Ralph Castain
19bb64cfb8 If a tool sees the HNP it is attached to die (thereby losing connection), then stop the event loop instead of going through the abort code path. This will allow the tool to cleanup before exiting
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-01-19 14:04:06 -08:00
Ralph Castain
e5f687f896 Speed-up the OOB/TCP communications by using writev instead of writing the header, and then separately write the body
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-01-19 13:03:44 -08:00
Ralph Castain
368684bd63 Revert e9bc293 and try a different approach for scalably dealing with hetero clusters. Have each orted send back its topo "signature". If mpirun detects that this signature has not been seen before, then ask for that daemon to send back its full topology description. This allows the system to only get the topology once for each unique topo in the cluster.
Cleanup a typo, and remove no longer needed MCA params for hetero nodes and hetero apps. Hetero nodes will always be automatically detected. We don't support a mix of 32 and 64 bit apps

Modify the orte_node_t to use orte_topology_t instead of hwloc_topology_t, updating all the places that use it. Ensure that we properly update topology when we see a different one on a compute node.

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-01-18 10:22:15 -08:00
Ralph Castain
e9bc2934be Add an MCA param "hnp_on_smgmt_node" that mpirun can use to tell the orteds to ignore its topology signature as mpirun is executing on a system mgmt node, and hence a different topology than the compute nodes
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-01-16 19:32:01 -08:00
Ralph Castain
74a285be83 Cancel the waitpid callback once the waitpid on a process has fired to avoid multiple notifications
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-01-16 14:32:02 -08:00
Ralph Castain
9e8c7d6295 Silence Coverity warning
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-01-15 07:51:37 -08:00
Ralph Castain
6b34cc67d6 Correct typo
Fixes #2691

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-01-15 07:48:31 -08:00
Ralph Castain
3a157f0496 One more time - we "push" IOF for stdout, stderr, and stddiag with separate calls. However, we were creating the sinks for all three of them each time, which caused them to leak. Create the sinks only once for each channel.
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-01-14 17:40:36 -08:00
Ralph Castain
b55c03255a Strange - I had created a new IOF API "complete" for cleaning up at the end of jobs, but somehow the implementation is missing. It also appears that the orted's never actually cleaned up their job-related information. These things are fine for normal mpirun-based operations, but cause significant resource leaks for the DVM.
Complete the implementation and seal the leaks

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-01-12 19:54:18 -08:00
Ralph Castain
0e2df3be3e Missed one spot - plug fd leaks in orteds
Fixes #2691

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-01-12 13:45:46 -08:00
Ralph Castain
9ad02b5d13 Merge pull request #2718 from rhc54/topic/leaks
Don't remove the IOF framework's tracking info for a proc until the state machine tells it to do so.
2017-01-12 09:57:17 -08:00
Nathan Hjelm
110840fc87 ess/hnp: add support for forwarding additional signals (#2712)
* ess/hnp: add support for forwarding additional signals

This commit adds support to the hnp ess module to forward additional
signals beyond the default SIGUSR1, SIGUSR2, SIGSTP, and SIGCONT.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>

* Generalize this a bit to allow a broader range of signals to be forwarded. Turns out that SIGURG is now a "standard" signal, though the value differs across systems. So setup to forward it (and some friends) if they are defined. Allow users to provide the signal name (instead of the integer value) as the value of even the more common signals does vary across systems. Don't limit the number that can be supported.

Signed-off-by: Ralph Castain <rhc@open-mpi.org>

* ess/hnp: fix some bugs in the signal forwarding code

This commit fixes two bugs:

 - signals_set needs to be set even if no signals are being
   forwarded. If it is not set we will SEGV in libevent if
   ess_hnp_forward_signals == none.

 - SIGTERM and SIGHUP are handled with a different type of handler. Do
   not allow the user to specify these to be forwarded.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>

* We are sure to get "dinged" if error messages aren't nicely output via show_help, so do so here

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-01-12 10:09:41 -07:00
Ralph Castain
fa419d3c0d Don't remove the IOF framework's tracking info for a proc until the
state machine tells it to do so. This plugs leaked file descriptors as
we were losing track prior to destructing the resources.

Fixes #2691

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-01-12 08:34:29 -08:00
Ralph Castain
aff3a00059 Protect default mapping/binding options for cases where no NUMA or
SOCKET objects exist - like VMs

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-01-11 09:44:44 -08:00
Ralph Castain
93e4935902 Be a tad more cautious before releasing objects when running in DVM mode
Fixes #2700

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-01-10 14:04:27 -08:00
Gilles Gouaillardet
44c1ff60f1 Merge pull request #2672 from ggouaillardet/topic/misc_memory_leaks
Plug misc memory leaks
2017-01-10 13:16:04 +09:00
Joshua Ladd
3e23380bba Merge pull request #2675 from artpol84/orte/state/exit_1_fix
orte/odls: Fix ORTE state machine for the non-zero exit case
2017-01-09 12:32:37 -05:00
Joshua Ladd
7fc9f9bbac Merge pull request #2620 from karasevb/fix_rmaps_mindist
rmaps/mindist: fix pmix errors
2017-01-06 17:26:48 -05:00
Ralph Castain
684e69695f Minor cleanups to eliminate warnings
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-01-06 08:44:10 -08:00
Artem Polyakov
3eb6c98542 orte/odls: Fix ORTE state machine for the non-zero exit case
This commit fixes rare race condition that occurs when the process
that is calling `exit(-1)` has delay between fd cleanup and actual
OS-level exit. This may happen if the process has some work to do
`on_exit()`.

**Problem description**:
Consider an application process that has called `exit(nonzero)`, it's
fd's was closed
but it's actual termination at OS level is delayed by some cleanups (eg.
in callbacks registered via `on_exit()`).
Observed sequence of events was the following:

* orted gets stdio disconnection and activating `IOF COMPLETE` state.
* parallel OOB disconnection causes `COMMUNICATION FAILURE` state to be
activated.
* during `COMMUNICATION FAILURE` processing `odls_base_default_wait_local_proc`
is called even though real waitpid wasn't yet called (code mentions that
waitpid might not be called for unspecified reason). Because of that real exit
code is unknown and set to 0. `odls_base_default_wait_local_proc` callback sees
`IOF COMPLETE` flag and in conjunction with 0-exit-code it activates
`WAITPID FIRED` state.
* processing of `WAITPID FIRED` leads to `NORMALLY TERMINATED` to be
activated.
* `NORMALLY TERMINATED` state in particular leads `ORTE_PROC_FLAG_ALIVE` flag
for this proc to be dropped.
* when application process finally exits and `wait_signal_callback` is
launched. It sets real exit code and calls `odls_base_default_wait_local_proc`
again but at this time since the process has `ORTE_PROC_FLAG_ALIVE` flag
dropped `WAITPID FIRED` state is activated (instead of `EXITED WITH NON-ZERO`)
leading to a hang that was observed.

Signed-off-by: Artem Polyakov <artpol84@gmail.com>
2017-01-06 11:12:55 +02:00
Gilles Gouaillardet
6b9343a966 plm/rsh: plug a memory leak
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-01-06 15:38:45 +09:00
Gilles Gouaillardet
8ba92d7516 iof/base: plug a memory leak in orte_iof_base_close()
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-01-06 15:38:45 +09:00
Gilles Gouaillardet
7fe6840232 state/hnp: plug a memory leak
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-01-06 15:38:45 +09:00
Gilles Gouaillardet
4d58b8dcae ess/pmi: plug a memory leak
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-01-06 15:38:45 +09:00
Gilles Gouaillardet
c0c5dd8ccc orte: plug a memory leak in orte_rml.recv_cancel
do not invoke orte_rml.recv_cancel after the orte progress thread has gone

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-01-06 15:38:44 +09:00
Gilles Gouaillardet
17fac4bfd1 grpcomm/base: get rid of the seq_num field of the orte_grpcomm_signature_t struct
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-01-06 15:38:44 +09:00
Gilles Gouaillardet
fe25f50871 grpcomm/base: plug a memory leak on finalize
manually allocate sequence numbers to be stored into the
orte_grpcomm_base.sig_table hash table, and manually release
them on orte_grpcomm_base_close()

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-01-06 15:38:44 +09:00
Gilles Gouaillardet
0ee5d56ab1 grpcomm/direct: plug a memory leak in barrier_release()
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-01-06 13:46:35 +09:00
Gilles Gouaillardet
f2d6584189 grpcomm/base: plug misc memory leaks
- add a destructor to orte_grpcomm_caddy_t in order to plug a memory leak

- plug a memory leak in barrier_release()

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-01-06 13:46:21 +09:00
Gilles Gouaillardet
58f2a764f9 ess/hnp: plug memory leaks
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-01-06 11:35:59 +09:00
Gilles Gouaillardet
24c61b0625 oob/tcp: plug a memory leak in mca_oob_tcp_component_lost_connection()
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-01-06 11:35:59 +09:00
Gilles Gouaillardet
c7d9e62d47 rml/base: plug a memory leak
add a destructor to orte_rml_send_request_t in order
to plug a memory leak

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-01-06 11:35:59 +09:00
Ralph Castain
6509f60929 Complete the memprobe support. This provides a new scaling tool called "mpi_memprobe" that samples the memory footprint of the local daemon and the client procs, and then reports the results. The output contains the footprint of the daemon on each node, plus the average footprint of the client procs on that node.
Samples are taken after MPI_Init, and then again after MPI_Barrier. This allows the user to see memory consumption caused by add_procs, as well as any modex contribution from forming connections if pmix_base_async_modex is given.

Using the probe simply involves executing it via mpirun, with however many copies you want per node. Example:

$ mpirun -npernode 2 ./mpi_memprobe
Sampling memory usage after MPI_Init
Data for node rhc001
	Daemon: 12.483398
	Client: 6.514648

Data for node rhc002
	Daemon: 11.865234
	Client: 4.643555

Sampling memory usage after MPI_Barrier
Data for node rhc001
	Daemon: 12.520508
	Client: 6.576660

Data for node rhc002
	Daemon: 11.879883
	Client: 4.703125

Note that the client value on node rhc001 is larger - this is where rank=0 is housed, and apparently it gets a larger footprint for some reason.

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-01-05 10:32:17 -08:00
Ralph Castain
9eab9a1ed3 Remove stale global variables
Revamp the event notification integration to rely on the PMIx event chaining and remove the duplicate chaining in OPAL. This ensures we get system-level events that target non-default handlers.

Restore the hostname entries for MPI-level error messages, but provide an MCA param (orte_hostname_cutoff) to remove them for large clusters where the memory footprint is problematic. Set the default at 1000 nodes in the job (not the allocation).

Begin first cut at memory profiler

Some minor cleanups of memprobe

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-01-02 14:04:24 -08:00
Ralph Castain
fe68f23099 Only instantiate the HWLOC topology in an MPI process if it actually will be used.
There are only five places in the non-daemon code paths where opal_hwloc_topology is currently referenced:

* shared memory BTLs (sm, smcuda). I have added a code path to those components that uses the location string
  instead of the topology itself, if available, thus avoiding instantiating the topology

* openib BTL. This uses the distance matrix. At present, I haven't developed a method
  for replacing that reference. Thus, this component will instantiate the topology

* usnic BTL. Uses the distance matrix.

* treematch TOPO component. Does some complex tree-based algorithm, so it will instantiate
  the topology

* ess base functions. If a process is direct launched and not bound at launch, this
  code attempts to bind it. Thus, procs in this scenario will instantiate the
  topology

Note that instantiating the topology on complex chips such as KNL can consume
megabytes of memory.

Fix pernode binding policy

Properly handle the unbound case

Correct pointer usage

Do not free static error messages!

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2016-12-29 10:33:29 -08:00
Ralph Castain
3a2d6a5ab6 Begin to reduce reliance of application procs on the topology tree itself by having the daemon provide more detailed info. In this case, provide the topology description string so that procs can readily determine the number of types of objects on the node, and a "locality" string that describes which objects this process is executing upon. The latter allows a process to compute the objects of overlap between itself and another proc without consulting the topology tree.
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2016-12-28 09:14:26 -08:00
Ralph Castain
7866bb1119 Add debug, cleanup cpus/rank
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2016-12-27 21:25:52 -08:00
Ralph Castain
1e4bffd937 Fix mapping directive checks
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2016-12-27 20:42:47 -08:00
Ralph Castain
791f4f1ce3 Adjust debug output for clarity
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2016-12-26 14:04:20 -08:00
Ralph Castain
ef3f748d0d Transfer some minor cleanups back from the PMIx reference server
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2016-12-23 08:46:04 -08:00
Boris Karasev
5fb3e0a9b6 rmaps/mindist: fix pmix errors
Fixed the case were only part of the nodes in the allocation
are used by the applicaton proccesses.

Force PMIx nodemap key to only contain nodes that are actually
used by the application proccesses.

Signed-off-by: Boris Karasev <karasev.b@gmail.com>
2016-12-21 06:42:04 +02:00
Ralph Castain
ea133206ec Sync the internal OMPI component to PMIx master
Update external PMIx v2.x component
Add missing Makefile

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2016-12-19 19:14:16 -08:00
Ralph Castain
256b5adac5 Transfer across final fixes from debugger attach work
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2016-12-19 00:34:27 -08:00
Ralph Castain
c6f6f40529 Transfer debugger support changes
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2016-12-17 18:14:46 -08:00
Ralph Castain
269753f5c1 Transfer back changes from debugger attach work
Silence warning

Remove debug

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2016-12-17 10:00:52 -08:00
Ralph Castain
215d6290e0 Add a flux component for LLNL
Fine tuning of flux component
Fix a few minor issues with the initial cut:
* Job id could be obtained from the PMI kvsname like SLURM,
  but simpler to getenv (FLUX_JOB_ID)
* Flux pmi-1 doesn't define PMI_BOOL, PMI_TRUE, PMI_FALSE
* Flux pmi-1 maps the deprecated PMI_Get_kvs_domain_id() to
  PMI_KVS_Get_my_name() internally, so just call that instead.
* Drop residual slurm references.

Add wrappers for PMI functions so that if HAVE_FLUX_PMI_LIBRARY
is not defined, the component can dlopen libpmi.so at location
specified by the FLUX_PMI_LIBRARY_PATH env variable, which adds
flexibility.  If HAVE_FLUX_PMI_LIBRARY is defined, link with
libpmi.so at build time in the usual way.

Update configury for flux component

Update m4 so the configure options work as follows:

 --with-flux-pmi
      Build Flux PMI support (default: yes)

 --with-flux-pmi-library
      Link Flux PMI support with PMI library at build
      time. Otherwise the library is opened at runtime at
      location specified by FLUX_PMI_LIBRARY_PATH environment
      variable. Use this option to enable Flux support when
      building statically or without dlopen support (default: no)

If the latter option is provided, the library/header is located at
build time using the pkg-config module 'flux-pmi'.  Otherwise there
is no library/header dependency.

Handle the case where ompi is configured with --disable-dlopen
or --enable-statkc.  In those cases, don't build the component
unless --with-flux-pmi-library is provided.

It is fatal if the user explicitly requests --with-flux-pmi but
it cannot be built (e.g. due to --disable-dlopen).

Add a schizo/flux component

Update schizo/flux component

Eliminate slurm-specific usage cases.

Since the module is only loaded if FLUX_JOB_ID is set, there are
only two cases to handle:

1) App was launched indirectly through mpirun.  This is not yet
supported with Flux, but hook remains in case this mode is supported
in the future.

2) App was launched directly by Flux, with Flux providing
CPU binding, if any.

Fix up white space in pmix/flux component

Drop non-blocking fence from pmix:flux component

The flux PMI-1 library is not thread safe, therefore
register a regular blocking fence callback instead of the
thread-shifting fencenb().

pmix/flux component avoids extra PMI_KVS_Gets

Keys stored into the base cache under the wildcard
rank are not intended to be part of the global key namespace.
These keys therefore should not trigger a PMI_KVS_Get() if they
are not found in the cache.

Minor pmix/flux component cleanup

pmix/flux: drop code for fetching unused pmix_id

pmix/flux: err_exit must return error

Problem: in flux_init(), although 'ret' (variable holding
err_exit return code) is initialized to OPAL_ERROR, the
variable is reused as a temporary result code, so if there are
some successes followed by a failure that doesn't set 'ret',
flux_init() could return success with PMI not initialized.

Ensure that a "goto err_exit" returns OPAL_ERROR if 'ret'
is not set to some other error code.

pmix/flux: don't mix OPAL_ and PMI_ return codes

Problem: flux_init() can return both PMI_ and OPAL_ return
codes.  Although OPAL_SUCCESS and PMI_SUCCESS are both defined
as 0, other codes are not compatible.

Ensure that flux_init() consistently uses 'rc' for PMI_
return codes and 'ret' for OPAL_ return codes.

pmix/flux: factor out repeated code for cache put

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2016-12-16 18:26:38 -08:00
Ralph Castain
2af677b1cf Ensure that we don't bind-by-default in an oversubscribed condition
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2016-12-15 07:58:52 -08:00
Ralph Castain
884fb7fcf2 Update the PMIx2 support to include the latest shared memory optimizations
Update ORTE support for dynamic PMIx operations e.g., PMIx_Spawn
Update to track master
Ensure that --disable-pmix-dstore actually disables the dstore. Sync to a few debugger updates

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2016-12-14 15:00:10 -08:00
Ralph Castain
9f69b0183f Ensure jobs that fail always return a non-zero exit code.
Thanks to Ashley Pittman for the report.

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2016-12-14 09:41:06 -08:00
rhc54
341ab683de Merge pull request #2532 from rhc54/topic/pmixptl
Update to latest PMIx master + PTL branch
2016-12-07 17:28:22 -08:00
Ralph Castain
e1aa7939ef Correctly cleanup the local children and node map info on remote orteds upon job completion. Ensure that register_nspace only includes procs from that job in the proc map
Thanks to Ashley Pittman for the report

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2016-12-07 13:53:00 -08:00