http://www.open-mpi.org/community/lists/devel/2010/07/8240.php
Documentation:
http://osl.iu.edu/research/ft/
Major Changes:
--------------
* Added C/R-enabled Debugging support.
Enabled with the --enable-crdebug flag. See the following website for more information:
http://osl.iu.edu/research/ft/crdebug/
* Added Stable Storage (SStore) framework for checkpoint storage
* 'central' component does a direct to central storage save
* 'stage' component stages checkpoints to central storage while the application continues execution.
* 'stage' supports offline compression of checkpoints before moving (sstore_stage_compress)
* 'stage' supports local caching of checkpoints to improve automatic recovery (sstore_stage_caching)
* Added Compression (compress) framework to support
* Add two new ErrMgr recovery policies
* {{{crmig}}} C/R Process Migration
* {{{autor}}} C/R Automatic Recovery
* Added the {{{ompi-migrate}}} command line tool to support the {{{crmig}}} ErrMgr component
* Added CR MPI Ext functions (enable them with {{{--enable-mpi-ext=cr}}} configure option)
* {{{OMPI_CR_Checkpoint}}} (Fixes trac:2342)
* {{{OMPI_CR_Restart}}}
* {{{OMPI_CR_Migrate}}} (may need some more work for mapping rules)
* {{{OMPI_CR_INC_register_callback}}} (Fixes trac:2192)
* {{{OMPI_CR_Quiesce_start}}}
* {{{OMPI_CR_Quiesce_checkpoint}}}
* {{{OMPI_CR_Quiesce_end}}}
* {{{OMPI_CR_self_register_checkpoint_callback}}}
* {{{OMPI_CR_self_register_restart_callback}}}
* {{{OMPI_CR_self_register_continue_callback}}}
* The ErrMgr predicted_fault() interface has been changed to take an opal_list_t of ErrMgr defined types. This will allow us to better support a wider range of fault prediction services in the future.
* Add a progress meter to:
* FileM rsh (filem_rsh_process_meter)
* SnapC full (snapc_full_progress_meter)
* SStore stage (sstore_stage_progress_meter)
* Added 2 new command line options to ompi-restart
* --showme : Display the full command line that would have been exec'ed.
* --mpirun_opts : Command line options to pass directly to mpirun. (Fixes trac:2413)
* Deprecated some MCA params:
* crs_base_snapshot_dir deprecated, use sstore_stage_local_snapshot_dir
* snapc_base_global_snapshot_dir deprecated, use sstore_base_global_snapshot_dir
* snapc_base_global_shared deprecated, use sstore_stage_global_is_shared
* snapc_base_store_in_place deprecated, replaced with different components of SStore
* snapc_base_global_snapshot_ref deprecated, use sstore_base_global_snapshot_ref
* snapc_base_establish_global_snapshot_dir deprecated, never well supported
* snapc_full_skip_filem deprecated, use sstore_stage_skip_filem
Minor Changes:
--------------
* Fixes trac:1924 : {{{ompi-restart}}} now recognizes path prefixed checkpoint handles and does the right thing.
* Fixes trac:2097 : {{{ompi-info}}} should now report all available CRS components
* Fixes trac:2161 : Manual checkpoint movement. A user can 'mv' a checkpoint directory from the original location to another and still restart from it.
* Fixes trac:2208 : Honor various TMPDIR varaibles instead of forcing {{{/tmp}}}
* Move {{{ompi_cr_continue_like_restart}}} to {{{orte_cr_continue_like_restart}}} to be more flexible in where this should be set.
* opal_crs_base_metadata_write* functions have been moved to SStore to support a wider range of metadata handling functionality.
* Cleanup the CRS framework and components to work with the SStore framework.
* Cleanup the SnapC framework and components to work with the SStore framework (cleans up these code paths considerably).
* Add 'quiesce' hook to CRCP for a future enhancement.
* We now require a BLCR version that supports {{{cr_request_file()}}} or {{{cr_request_checkpoint()}}} in order to make the code more maintainable. Note that {{{cr_request_file}}} has been deprecated since 0.7.0, so we prefer to use {{{cr_request_checkpoint()}}}.
* Add optional application level INC callbacks (registered through the CR MPI Ext interface).
* Increase the {{{opal_cr_thread_sleep_wait}}} parameter to 1000 microseconds to make the C/R thread less aggressive.
* {{{opal-restart}}} now looks for cache directories before falling back on stable storage when asked.
* {{{opal-restart}}} also support local decompression before restarting
* {{{orte-checkpoint}}} now uses the SStore framework to work with the metadata
* {{{orte-restart}}} now uses the SStore framework to work with the metadata
* Remove the {{{orte-restart}}} preload option. This was removed since the user only needs to select the 'stage' component in order to support this functionality.
* Since the '-am' parameter is saved in the metadata, {{{ompi-restart}}} no longer hard codes {{{-am ft-enable-cr}}}.
* Fix {{{hnp}}} ErrMgr so that if a previous component in the stack has 'fixed' the problem, then it should be skipped.
* Make sure to decrement the number of 'num_local_procs' in the orted when one goes away.
* odls now checks the SStore framework to see if it needs to load any checkpoint files before launching (to support 'stage'). This separates the SStore logic from the --preload-[binary|files] options.
* Add unique IDs to the named pipes established between the orted and the app in SnapC. This is to better support migration and automatic recovery activities.
* Improve the checks for 'already checkpointing' error path.
* A a recovery output timer, to show how long it takes to restart a job
* Do a better job of cleaning up the old session directory on restart.
* Add a local module to the autor and crmig ErrMgr components. These small modules prevent the 'orted' component from attempting a local recovery (Which does not work for MPI apps at the moment)
* Add a fix for bounding the checkpointable region between MPI_Init and MPI_Finalize.
This commit was SVN r23587.
The following Trac tickets were found above:
Ticket 1924 --> https://svn.open-mpi.org/trac/ompi/ticket/1924
Ticket 2097 --> https://svn.open-mpi.org/trac/ompi/ticket/2097
Ticket 2161 --> https://svn.open-mpi.org/trac/ompi/ticket/2161
Ticket 2192 --> https://svn.open-mpi.org/trac/ompi/ticket/2192
Ticket 2208 --> https://svn.open-mpi.org/trac/ompi/ticket/2208
Ticket 2342 --> https://svn.open-mpi.org/trac/ompi/ticket/2342
Ticket 2413 --> https://svn.open-mpi.org/trac/ompi/ticket/2413
This commit looks larger than it really is since it includes a fair amount of code cleanup.
The SIGSTOP/SIGCONT+checkpointing work uses some of the functionality in r20391. Basic use case below (note that the checkpoint generated is useable as usual if the stopped application is terminated).
{{{
shell 1) mpirun -np 2 -am ft-enable-cr my-app
... running ...
shell 2) ompi-checkpoint --stop -v MPIRUN_PID
[localhost:001300] [ 0.00 / 0.20] Requested - ...
[localhost:001300] [ 0.00 / 0.20] Pending - ...
[localhost:001300] [ 0.01 / 0.21] Running - ...
[localhost:001300] [ 1.01 / 1.22] Stopped - ompi_global_snapshot_1234.ckpt
Snapshot Ref.: 0 ompi_global_snapshot_1234.ckpt
shell 2) killall -CONT mpirun
... Application Continues execution in shell 1 ...
}}}
Other items in this commit are mostly cleanup that has been sitting off-trunk for too long:
* Add a new {{{opal_crs_base_ckpt_options_t}}} type that encapsulates the various options that could be passed to the CRS. Currently only TERM and STOP, but this makes adding others ''much'' easier.
* Eliminate ORTE_SNAPC_CKPT_STATE_PENDING_TERM, since it served a redundant purpose with the new options type.
* Lay some basic ground work for some future features.
This commit was SVN r21995.
The following SVN revision numbers were found above:
r20391 --> open-mpi/ompi@0704b98668
#if defined (c_plusplus)
defined (__cplusplus)
followed by
extern "C" {
and the closing counterpart by BEGIN_C_DECLS and END_C_DECLS.
Notable exceptions are:
- opal/include/opal_config_bottom.h:
This is our generated code, that itself defines BEGIN_C_DECL and
END_C_DECL
- ompi/mpi/cxx/mpicxx.h:
Here we do not include opal_config_bottom.h:
- Belongs to external code:
opal/mca/backtrace/darwin/MoreBacktrace/MoreDebugging/MoreBacktrace.c
opal/mca/backtrace/darwin/MoreBacktrace/MoreDebugging/MoreBacktrace.h
- opal/include/opal/prefetch.h:
Has C++ specific macros that are protected:
- Had #if ... } #endif _and_ END_C_DECLS (aka end up with 2x
END_C_DECLS)
ompi/mca/btl/openib/btl_openib.h
- opal/event/event.h has #ifdef __cplusplus as BEGIN_C_DECLS...
- opal/win32/ompi_process.h: had extern "C"\n {...
opal/win32/ompi_process.h: dito
- ompi/mca/btl/pcie/btl_pcie_lex.l: needed to add *_C_DECLS
ompi/mpi/f90/test/align_c.c: dito
- ompi/debuggers/msgq_interface.h: used #ifdef __cplusplus
- ompi/mpi/f90/xml/common-C.xsl: Amend
Tested on linux using --with-openib and --with-mx
The following do not contain either opal_config.h, orte_config.h or
ompi_config.h
(but possibly other header files, that include one of the above):
ompi/mca/bml/r2/bml_r2_ft.h
ompi/mca/btl/gm/btl_gm_endpoint.h
ompi/mca/btl/gm/btl_gm_proc.h
ompi/mca/btl/mx/btl_mx_endpoint.h
ompi/mca/btl/ofud/btl_ofud_endpoint.h
ompi/mca/btl/ofud/btl_ofud_frag.h
ompi/mca/btl/ofud/btl_ofud_proc.h
ompi/mca/btl/openib/btl_openib_mca.h
ompi/mca/btl/portals/btl_portals_endpoint.h
ompi/mca/btl/portals/btl_portals_frag.h
ompi/mca/btl/sctp/btl_sctp_endpoint.h
ompi/mca/btl/sctp/btl_sctp_proc.h
ompi/mca/btl/tcp/btl_tcp_endpoint.h
ompi/mca/btl/tcp/btl_tcp_ft.h
ompi/mca/btl/tcp/btl_tcp_proc.h
ompi/mca/btl/template/btl_template_endpoint.h
ompi/mca/btl/template/btl_template_proc.h
ompi/mca/btl/udapl/btl_udapl_eager_rdma.h
ompi/mca/btl/udapl/btl_udapl_endpoint.h
ompi/mca/btl/udapl/btl_udapl_mca.h
ompi/mca/btl/udapl/btl_udapl_proc.h
ompi/mca/mtl/mx/mtl_mx_endpoint.h
ompi/mca/mtl/mx/mtl_mx.h
ompi/mca/mtl/psm/mtl_psm_endpoint.h
ompi/mca/mtl/psm/mtl_psm.h
ompi/mca/pml/cm/pml_cm_component.h
ompi/mca/pml/csum/pml_csum_comm.h
ompi/mca/pml/dr/pml_dr_comm.h
ompi/mca/pml/dr/pml_dr_component.h
ompi/mca/pml/dr/pml_dr_endpoint.h
ompi/mca/pml/dr/pml_dr_recvfrag.h
ompi/mca/pml/example/pml_example.h
ompi/mca/pml/ob1/pml_ob1_comm.h
ompi/mca/pml/ob1/pml_ob1_component.h
ompi/mca/pml/ob1/pml_ob1_endpoint.h
ompi/mca/pml/ob1/pml_ob1_rdmafrag.h
ompi/mca/pml/ob1/pml_ob1_recvfrag.h
ompi/mca/pml/v/pml_v_output.h
opal/include/opal/prefetch.h
opal/mca/timer/aix/timer_aix.h
opal/util/qsort.h
test/support/components.h
This commit was SVN r21855.
The following SVN revision numbers were found above:
r2 --> open-mpi/ompi@58fdc18855
I promoted the ''none'' component to a full component, and updated the other components to reflect this code movement. The ''none'' component is the default component unless the user requests '''-am ft-enable-cr''' to auto-select a component. There is an MCA parameter to show a warning if the application requested an FT enabled job, but the ''none'' component was selected ({{{crs_none_select_warning}}}).
This temporarily fixes the problem mentioned in r18739. The full fix will entail working on ticket #1291.
Thanks to Ethan from Sun for finding this bug.
This commit was SVN r18840.
The following SVN revision numbers were found above:
r18739 --> open-mpi/ompi@a003fa7a50
* Remove the opal_only option. This was suffering from bit rot, and no one uses it. It can be added back fairly easily if wanted.
* Cleanup metadata interactions at the local level.
* Touch up some of the INC funcitonality (fix typos and a minor ordering issue)
This commit was SVN r18416.
http://www.open-mpi.org/community/lists/devel/2008/04/3779.php
{{{
svn merge -r 18276:18380 https://svn.open-mpi.org/svn/ompi/tmp-public/jjh-mca-play .
}}}
Any components not in the trunk, but in one of the effected frameworks *must* be
updated. Contact the list, look at the RFC, or look at the diff for how to do this.
Sorry for the early commit of this, but I wanted to get it in today (per RFC) and
didn't know if I would have a chance later today.
This commit was SVN r18381.
* Extension to the ESS framework to support C/R
* Fixed support for {{{snapc_base_establish_global_snapshot_dir}}}
* Fixed FileM support
* Misc. minor code modifications
There are some outstanding visability issues that I want to fix next.
This commit was SVN r17725.
Some MPI C interface files saw some spacing changes to conform to the coding standards of Open MPI.
Changed MPI C interface files to use {{{OPAL_CR_ENTER_LIBRARY()}}} and {{{OPAL_CR_EXIT_LIBRARY()}}} instead of just {{{OPAL_CR_TEST_CHECKPOINT_READY()}}}. This will allow the checkpoint/restart system more flexibility in how it is to behave.
Fixed the configure check for {{{--enable-ft-thread}}} so it has a know dependance on {{{--enable-mpi-thread}}} (and/or {{{--enable-progress-thread}}}).
Added a line for Checkpoint/Restart support to {{{ompi_info}}}.
Added some options to choose at runtime whether or not to use the checkpoint polling thread. By default, if the user asked for it to be compiled in, then it is used. But some users will want the ability to toggle its use at runtime.
There are still some places for improvement, but the feature works correctly. As always with Checkpoint/Restart, it is compiled out unless explicitly asked for at configure time. Further, if it was configured in, then it is not used unless explicitly asked for by the user at runtime.
This commit was SVN r17516.
This merge adds Checkpoint/Restart support to Open MPI. The initial
frameworks and components support a LAM/MPI-like implementation.
This commit follows the risk assessment presented to the Open MPI core
development group on Feb. 22, 2007.
This commit closes trac:158
More details to follow.
This commit was SVN r14051.
The following SVN revisions from the original message are invalid or
inconsistent and therefore were not cross-referenced:
r13912
The following Trac tickets were found above:
Ticket 158 --> https://svn.open-mpi.org/trac/ompi/ticket/158
