ports/openmpi
ports/openmpi
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4633 Коммитов

Автор SHA1 Сообщение Дата
Ralph Castain
a3275aa867 Once again, fix the blasted singleton comm_spawn 2015-02-05 17:34:25 -08:00
Ralph Castain
f28238af59 Fix a race condition seen by Absoft during finalize. Stop the orte progress thread without cleaning it up, thus allowing the frameworks to still cancel their posted recv's. Then cleanup the memory footprint afterwards. 2015-02-05 11:41:37 -08:00
Jeff Squyres
938b8e1dad schitzo: fix free of uninitialized value 
The "param" value is not assigned before this free() statement.  So
remove it.

(yay clang compiler warnings)
 2015-02-04 15:50:24 -05:00
Ralph Castain
251084a2da When a tool requests the spawn of a new job, then exclusively forward output to that tool - the DVM should not output its own copy as well. 2015-02-04 07:59:47 -08:00
Ralph Castain
2b0b012460 Continue refinement of the DVM operations. Send the spawn request to the right place (it helps) as it isn't a comm_spawn request and has to be treated a little differently. Ensure IO gets forwarded back to the tool. Ensure the tool outputs show_help locally as there is no place to send it. 2015-02-04 06:21:54 -08:00
Ralph Castain
7299cc3ab9 Cleanup the communications handshake so that orte-submit properly terminates upon job completion, and properly sends the terminate command to orte-dvm 2015-02-03 07:25:43 -08:00
Elena
5919b636e1 changed output format in pmix unit test 2015-02-02 14:22:51 +02:00
Ralph Castain
4dba298e6e Update orte-submit manpage, add the ompi-* versions of orte-dvm and orte-submit manpages 2015-02-01 15:46:40 -08:00
Ralph Castain
e303a9b1d6 Provide an orte-dvm man page. Provide an option to orte-submit for terminating the DVM 2015-02-01 12:14:44 -08:00
Ralph Castain
ec5ccb76cf Enable persistent ORTE DVM so users can execute multiple OMPI jobs within an allocation without restarting the DVM every time. 2015-01-30 11:00:43 -08:00
rhc54
e7fa600d85 Merge pull request #360 from elenash/master 
added unit test for pmix functionality
 2015-01-28 06:18:57 -06:00
Elena
472baa1284 added unit test for pmix functionality 2015-01-28 13:18:26 +02:00
Ralph Castain
b838df9eb8 Get slurm to stay out of the way on singletons 2015-01-27 09:29:43 -06:00
Ralph Castain
294ebc907a Fix singleton operations so they can work inside a slurm environment 2015-01-27 09:29:42 -06:00
Ralph Castain
3eca55caec Continue fixing singletons in slurm environments 2015-01-27 09:29:42 -06:00
Ralph Castain
fcec24b2a4 Minor cleanups to handle comm_spawn and singletons 2015-01-27 09:29:42 -06:00
Ralph Castain
74385302c0 Add the personality to the orte_job_t datatype support 2015-01-27 09:29:42 -06:00
Ralph Castain
88c38f87d2 Get the orteds to use schizo as well 2015-01-27 09:29:42 -06:00
Ralph Castain
028b00154d Complete implementation of the schizo framework to support OMPI component 2015-01-27 09:29:42 -06:00
Ralph Castain
11c92eefe6 ckpt 2015-01-27 09:29:42 -06:00
rhc54
a1707326bf Merge pull request #359 from hppritcha/topic/better_help 
orte/util: minor improvement to show_help
 2015-01-25 08:13:49 -08:00
Howard Pritchard
1e94d84ae6 orte/util: minor improvement to show_help 
Make sure the show help gives it a good try to
print an error message locally if the
send_buffer_nb method returns an error.
 2015-01-23 13:54:03 -08:00
Howard Pritchard
2809c21e0f rml/oob: check peer param in send methods 
The rml/oob was not doing sanity checks on the input peer
parameter for the orte_rml_oob_send_nb and orte_rml_oob_send_buffer_nd.
Owing to the fact that there are places in the ompi/orte stack
where things like orte_show_help_norender are called way before
ORTE_PROC_MY_HNP, are setup properly, all kinds of weird
startup failures can occur as the rml/oob tries to process send
requests where the peer is junk.

Rather than try to expand this kind of thing:

    /* if we are the HNP, or the RML has not yet been setup,
     * or ROUTED has not been setup,
     * or we weren't given an HNP, or we are running in standalone
     * mode, then all we can do is process this locally
     */
    if (ORTE_PROC_IS_HNP || orte_standalone_operation ||
        NULL == orte_rml.send_buffer_nb ||
        NULL == orte_routed.get_route ||
        NULL == orte_process_info.my_hnp_uri) {
        rc = show_help(filename, topic, output, ORTE_PROC_MY_NAME);
    }

do the right thing in the rml level and return an error rather than
eventually failing in the send owing to peer not being valid.
 2015-01-22 06:12:39 -08:00
Howard Pritchard
06d3b57c07 Merge pull request #351 from hppritcha/topic/alps_odls_spawn_bug 
odls/alps: check if PMI gni rdma creds already set
 2015-01-19 11:48:24 -07:00
Howard Pritchard
fd807aee69 odls/alps: check if PMI gni rdma creds already set 
Need to check if the alps odls component has already
read the rdma creds from alps.  Its okay to ask apshepherd
multiple times for rdma creds, but opal_setenv gets
a bit picky about this.  Rather than check for the OPAL_EXISTS
return value from opal_setenv, for now just check with
a static variable whether or not orte_odls_alps_get_rdma_creds
has already been successfully called before.

Would be nice to have an opal_getenv function for checking
if an env. variable had already been set by opal_putenv.
 2015-01-19 10:12:38 -08:00
Gilles Gouaillardet
661c35ca67 cleanup dead code caused by the removal of the --with-threads configure option 2015-01-16 19:13:59 +09:00
Ralph Castain
e7ff21b3aa The opal_stop_progress_thread function releases the event base, so don't do it again 2015-01-15 10:48:40 -08:00
Ralph Castain
9ac39b63cc Use the opal_progress_threads support for the ORTE progress thread in applications 2015-01-15 07:55:19 -08:00
Ralph Castain
d2938a144f Use the proper interface index. Thanks to Mark Kettenis for spotting the problem and providing a patch 2015-01-12 05:31:02 -08:00
Howard Pritchard
f34dd5f5fd plm/alps: update copyright 2015-01-07 12:33:38 -07:00
Howard Pritchard
c454d11b01 plm/alps: fix orted abort hang problem 
Turns out the alps plm component wasn't changing the state
of the job upon terminating the orted's in the case of
an abnormal termination.  This caused mpirun to hang
with a zommbie'd aprun process if an orted on a node
in the job was killed via signal.
 2015-01-07 12:31:41 -07:00
Howard Pritchard
f0f98f13b6 odls/base: fix an edge case with signals 
In the course of doing some testing with how orted's
handle signaled child processes, found out that very
often doing a kill -9 on a process on a node just
results in the job hanging. The problem was that the
orted odls/errmgr was not properly handling the exit_code
being returned from waitpid.  Now mark the proc state
as ORTE_PROC_STATE_ABORTED_BY_SIG if the exit_code
from waitpid indicates the process exited owing to
a signal.
 2015-01-06 15:42:38 -07:00
Nadezhda Kogteva
05af80b302 Fix commit bffb2b7a4b which broke pmix server functionality 2014-12-24 13:25:23 +02:00
Ralph Castain
43a40f8aac LSF expresses its affinity file in hwthreads and expects those to be used as cpus, so set things accordingly 2014-12-19 12:06:05 -08:00
Ralph Castain
b314bfb5e9 If someone specifies the bitmap for hwthreads and wants hwthread cpus, then don't parse the slot list as it expects cores - just copy the provided bitmap across as it already has the required info 2014-12-19 10:56:14 -08:00
Jeff Squyres
7b43bdc984 plm base: move flag inside the #if in which it is used 
Avoid a compiler warning by declaring the tflag only inside the #if in
which it is used (i.e., if hwloc support is built).
 2014-12-18 10:56:23 -08:00
Ralph Castain
2581b41d08 Continue refactoring code by splitting the msg processing from the sendrecv code 2014-12-17 19:57:14 -08:00
Ralph Castain
f489e871c2 Take first step towards refactoring the PMIx server code by splitting out the proc_map function into its own file. Update ignore to include .DS_Store from the Mac 2014-12-17 19:08:52 -08:00
Artem Polyakov
01601f3284 Merge pull request #305 from artpol84/timing 
Timing framework improvement
 2014-12-16 15:13:48 +06:00
Ralph Castain
573a574a3c Remove an unused dstore type that was redundant with another one. Define a corresponding PMIX_NODE_ID type (contains the vpid of the daemon hosting the proc) and ensure that the PMIx server includes that info in its process map 2014-12-15 12:11:13 -08:00
Ralph Castain
a22cc45769 Close the pmix server sockets on exec 2014-12-13 20:30:21 -08:00
Ralph Castain
f4ff791335 Close oob/usock connections upon exec 2014-12-13 20:24:09 -08:00
Ralph Castain
6c4d5a51c4 Close tcp sockets upon exec 2014-12-13 20:23:53 -08:00
Ralph Castain
9658256a98 Restore the passing of the complete job map to the local proc on first get_attr so the info can be used by the MPI layer without continual calls back to the server. We'll find a more memory efficient method later. 2014-12-13 18:44:09 -08:00
Ralph Castain
bffb2b7a4b Correct some issues with variables used before being set 2014-12-12 17:23:32 -08:00
Ralph Castain
0630680f36 Two cleanups required for transfer to 1.8.4: 
* Use %d format for the topo signature as some systems apparently have problems with %u
* Use correct variable in show_help message
 2014-12-12 17:23:32 -08:00
Rolf vandeVaart
f4aecdbfd2 Change logging function name from log to logfn. Fixes issue with PGI compile 2014-12-12 09:46:44 -05:00
Artem Polyakov
8ffad75a0a Introduce timing interval measurement facility in timing framework 2014-12-10 16:47:49 +06:00
Ralph Castain
9d5135e6cd Function definition should use the correct type 2014-12-09 01:04:31 -08:00
Ralph Castain
bb529ebd8e Revise the way we handle hetero nodes as users are finding this (a) a significant surprise, and (b) confusing as to when it is required. So try to automate it a bit by creating a topology "signature" that mpirun can share on the cmd line with the remote daemons, thus allowing them to check to see if they match. This isn't comprehensive of course - for now, it only checks the number of each type of hwloc object on the node. This is good enough to pickup major differences (e.g., where we have different numbers of sockets or assigned core bindings). 
Retain the hetero-nodes flag for those cases where the user *knows* that there are differences and our automated system isn't good enough to see it.

Will obviously require further refinement as we find out which variances it can detect, and which it cannot.
 2014-12-08 15:38:14 -08:00