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Граф коммитов

29630 Коммитов

Автор SHA1 Сообщение Дата
Ralph Castain
f0f25b60a8
Fix typos
Provide a missing header and paren

Thanks to @zerothi for the assistance

Signed-off-by: Ralph Castain <rhc@pmix.org>
(cherry picked from commit bd5a1765ee)
2019-08-07 05:51:29 -07:00
Ralph Castain
9898332ae0
Allow individual jobs to set their map/rank/bind policies
Override the defaults when provided. Ignore LSF binding file if user
overrides by specifying a policy.

Fixes #6631

Signed-off-by: Ralph Castain <rhc@pmix.org>
(cherry picked from commit ea0dfc3218)
2019-08-07 05:51:06 -07:00
George Bosilca
f78d3d52cd
Optimize the pack/unpack.
Start optimizing the code.

This commit divides the operations in 2 parts, the first, outside the
critical part, deals with partial blocks of predefined elements, and the
second, inside the critical path, only deals with full blocks of
elements. This reduces the number of expensive operations in the
critical path and results in a decent performance increase.

Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
2019-08-05 09:39:53 -04:00
George Bosilca
87299e0b1c
Get rid of the division in the critical path.
Amazing how a bad instruction scheduling can have such a drastic impact
on the code performance. With this change, the get a boost of at least
50% on the performance of data with a small blocklen and/or count.

Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
2019-08-05 09:39:44 -04:00
George Bosilca
fad707d3b0
Rework the datatype commit.
Optimize contiguous loops by collapsing them into a single element.
During datatype optimization collapse similar elements into larger
blocks.

Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
2019-08-05 09:39:36 -04:00
George Bosilca
d5cdfe70ef
Optimize the position placement.
Upon detecting a datatype loop representation skip the entire loop
according the the remaining space.

Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
2019-08-05 09:39:27 -04:00
George Bosilca
78cc0ff891
Disable checksum.
Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
2019-08-05 09:39:19 -04:00
George Bosilca
012a004806
Clean and sync the pack and unpack functions.
- optimize handling of contiguous with gaps datatypes.
- fixes a performance issue for all datatypes with a count of 1.
- optimize the pack/unpack of contiguous with gaps datatype.
- optimize the case of blocklen == 1

Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
2019-08-05 09:39:11 -04:00
George Bosilca
0a00b02e48
Small improvements on the test.
Rework the to_self test to be able to be used as a benchmark.

Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
2019-08-05 09:39:02 -04:00
George Bosilca
4cdc2155e5
Optimize the raw representation.
Merge contiguous iov in order to minimize the number of returned iovec.

Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
2019-08-05 09:38:52 -04:00
George Bosilca
8b794235b8
Update the datatype dump to match the actual types.
Update the comments to better reflect what is going on.
Minor indentations.

Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
2019-08-05 09:37:47 -04:00
George Bosilca
4f754d0156
Optimized datatype description.
Move toward a base type of vector (count, type, blocklen, extent, disp)
with disp and extent applying toward the count repertition and blocklen
being a contiguous memory of type type.
Implement 2 optimizations on this description used during type_commit:
- collapse: successive similar datatype descriptions are collapsed
together with an increased count.
- fusion: fuse successive datatype descriptions in order to minimize the
number of resulting memcpy during pack/unpack.

Fixes at the OMPI datatype level including:
 - Fix the create_hindexed and vector creation.
 - Fix the handling of [get|set]_elements and _count.
 - Correctly compute the dispacement for block indexed types.
 - Support the MPI_LB and MPI_UB deprecation, aka. OMPI_ENABLE_MPI1_COMPAT.

Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
2019-08-05 09:35:07 -04:00
George Bosilca
f68b06e9ee
Fix incorrect behavior with length == 0
Fixes #6575.

Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
2019-08-05 09:33:28 -04:00
Howard Pritchard
e547a2b94d
Merge pull request #6838 from ggouaillardet/topic/v4.0.x/misc_fortran_bindings
v4.0.x: misc Fortran related backports
2019-08-02 13:00:31 -06:00
Howard Pritchard
31aa52f11a
Merge pull request #6846 from nysal/topic/v4.0.x/ucx_accumulate_fix
v4.0.x: osc/ucx: Fix data corruption with non-contiguous accumulates
2019-08-02 12:43:40 -06:00
Howard Pritchard
673ddae79a
Merge pull request #6845 from brminich/tuned_all2all_select-v4.0.x
COLL/TUNED: Update alltoall selection rule for mellanox platform - v4.0.x
2019-07-30 05:09:27 -06:00
Nysal Jan K.A
359cdf2b53 osc/ucx: Fix data corruption with non-contiguous accumulates
Signed-off-by: Nysal Jan K.A <jnysal@in.ibm.com>
(cherry picked from commit 3529d44702)
2019-07-26 14:41:08 +05:30
Mikhail Brinskii
b9998a14dc COLL/TUNED: Minor var names/comments fixes
Signed-off-by: Mikhail Brinskii <mikhailb@mellanox.com>
(cherry picked from commit 65618f8db8)
2019-07-26 11:29:12 +03:00
Mikhail Brinskii
3d5b7b4a1b COLL/TUNED: Update alltoall selection rule for mlx
Use linear with sync alltoall algorithm for certain message/comm size
ranges. Does not affect default fixed decision, unless HPCX (with its
custom parameters) is used or corresponding mca is set.

Signed-off-by: Mikhail Brinskii <mikhailb@mellanox.com>
(cherry picked from commit 404c480068)
2019-07-26 11:28:47 +03:00
Howard Pritchard
86794e5b33
Merge pull request #6843 from awlauria/mpir_opt_v4.0.x
v4.0.x: Try to prevent the compiler from optimizing out MPIR_Breakpoint().
2019-07-25 18:01:17 -06:00
Austen Lauria
0422b23f35 Try to prevent the compiler from optimizing out MPIR_Breakpoint().
Signed-off-by: Austen Lauria <awlauria@us.ibm.com>
(cherry picked from commit 00106f5ac9)
Signed-off-by: Austen Lauria <awlauria@us.ibm.com>
2019-07-24 14:08:56 -04:00
KAWASHIMA Takahiro
1ffb9b10bb pcollreq/mpif-h: fix MPIX_Alltoallw_init() binding
These issues were introduced in the recent commit b71af0eca0.
This commit fixes Coverity CID 1451661 and 1451660.

Though `c_info` part was an actual bug, the `c_sendtypes` part was not.

Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>

(cherry picked from commit open-mpi/ompi@facf8c5e98)
2019-07-24 17:12:10 +09:00
Gilles Gouaillardet
13ba2b0d75 pcollreq/mpif-h: fix MPIX_Alltoallw_init() binding
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>

(cherry picked from commit open-mpi/ompi@b71af0eca0)
2019-07-24 17:11:44 +09:00
Gilles Gouaillardet
5ab26e490a fortran/mpif-h: fix [i]alltoallw bindings
Fix a regression introduced in open-mpi/ompi@cdaed89d04

Fixes CID 1451610, 1451611 and 1451612

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>

(cherry picked from commit open-mpi/ompi@ed703bec1b)
2019-07-24 17:10:58 +09:00
Gilles Gouaillardet
fbf7d31fd1 fortran/mpif-h: fix MPI_[I]Alltoallw() binding
- ignore sendcounts, sendispls and sendtypes arguments when MPI_IN_PLACE is used
 - use the right size when an inter-communicator is used.

Thanks Markus Geimer for reporting this.

Refs. open-mpi/ompi#5459

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>

(cherry picked from commit open-mpi/ompi@cdaed89d04)
2019-07-24 17:10:27 +09:00
Gilles Gouaillardet
aae73d9cf7 fortran/mpif-h: fix C to Fortran error code conversion
- remove incorrect use of OMPI_INT_2_FINT()
 - use homogenous syntax (e.g. c_ierr = PMPI_...())

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>

(cherry picked from commit open-mpi/ompi@223e6cc537)
2019-07-24 17:10:00 +09:00
Howard Pritchard
667aba9913
Merge pull request #6810 from janjust/v4.0.x
v4.0.x OSC: Reset external request to NULL
2019-07-23 09:05:03 -06:00
Geoff Paulsen
368da00414
Merge pull request #6804 from hppritcha/topic/swat_issue_6785
btl/openib:  fix issue 6785
2019-07-16 10:57:46 -05:00
Geoff Paulsen
507fcc9cef
Merge pull request #6806 from ggouaillardet/topic/v4.0.x/nbc_retain
v4.0.x: retain operation and datatype(s) in non blocking collectives
2019-07-16 10:56:57 -05:00
Tomislav Janjusic
63605fc466 v4.0.x OSC: Reset external request to NULL to avoid double request
completion
Co-authored with Artem Polyakov <artemp@mellanox.com>
Signed-off-by: Tomislav Janjusic <tomislavj@mellanox.com>
2019-07-12 22:49:34 +03:00
Howard Pritchard
71f240f078 btl/openib: fix issue 6785
Commit d7053a3 broke things for the case when Open MPI 4.0.x is built
without UCX support.  Problem was it was trying to partially initialize
the btl to try and delay printing of a help message till wireup.  Well
this sort of doesn't work in all cases.  Rather than keep piling on
changes to support a help message for a BTL that we are deprecating, take
a keep it simple stupid approach.

So, revert most of d7053a3 and instead put the help message back in the
original location, during scan of ports of the available HCAs to check
for whether or not link layer for that port is configured for ethernet or infiniband.
If Open MPI was built with UCX support, don't emit the help message, if
UCX was not linked in, emit the help message.

Verified on a system with connectX5 HCAs configured with two ports configured
for ethernet and two for infiniband.

relates to #6785

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2019-07-12 08:21:21 -06:00
Gilles Gouaillardet
c9e4240e70 mpi: retain operation and datatype in non blocking collectives
MPI standard states a user MPI_Op and/or user MPI_Datatype can be free'd
after a call to a non blocking collective and before the non-blocking
collective completes.
Retain user (only) MPI_Op and MPI_Datatype when the non blocking call is
invoked, and set a request callback so they are free'd when the MPI_Request
completes.

Thanks Thomas Ponweiser for reporting this

Fixes open-mpi/ompi#2151
Fixes open-mpi/ompi#1304

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>

(cherry picked from commit open-mpi/ompi@0fe756d416)
2019-07-12 10:27:04 +09:00
Aurelien Bouteiller
9499dcfe41 Manage errors in NBC collective ops
Signed-off-by: Aurelien Bouteiller <bouteill@icl.utk.edu>

Correctly bubble up errors in NBC collective operations

Signed-off-by: Aurelien Bouteiller <bouteill@icl.utk.edu>

The error field of requests needs to be rearmed at start, not at create

Signed-off-by: Aurelien Bouteiller <bouteill@icl.utk.edu>

(cherry picked from commit open-mpi/ompi@65660e5999)
2019-07-12 10:26:08 +09:00
Howard Pritchard
d3a736032a
Merge pull request #6800 from jsquyres/pr/v4.0.x/tcp-oob-active-listeners-fix
v4.0.x: Fix oob_tcp tcp_component_close segfault with active listeners
2019-07-09 09:07:26 -06:00
Orivej Desh
667fe3f3f3 Fix oob_tcp tcp_component_close segfault with active listeners
oob_tcp in non-HNP mode shares libevent event_base with oob_base [1].
orte_oob_base_close calls:
(1) oob_tcp component_shutdown, then
(2) opal_progress_thread_finalize, then
(3) oob_tcp tcp_component_close [2].
opal_progress_thread_finalize calls tracker_destructor [3] that frees the
event_base [4]. If any oob_tcp event listeners are active at this time, oob_tcp
will crash trying to delete them at [5] [6].

This change moves oob_tcp event listener cleanup from component_close to
component_shutdown so that it happens before the event_base is freed.

[1] https://github.com/open-mpi/ompi/blob/v4.0.1/orte/mca/oob/tcp/oob_tcp_listener.c#L160
[2] https://github.com/open-mpi/ompi/blob/v4.0.1/orte/mca/oob/base/oob_base_frame.c#L95
[3] https://github.com/open-mpi/ompi/blob/v4.0.1/opal/runtime/opal_progress_threads.c#L232
[4] https://github.com/open-mpi/ompi/blob/v4.0.1/opal/runtime/opal_progress_threads.c#L65
[5] https://github.com/open-mpi/ompi/blob/v4.0.1/orte/mca/oob/tcp/oob_tcp_component.c#L192
[6] https://github.com/open-mpi/ompi/blob/v4.0.1/orte/mca/oob/tcp/oob_tcp_listener.c#L955

Signed-off-by: Orivej Desh <orivej@gmx.fr>
(cherry picked from commit 78b7e342bd)
2019-07-08 15:14:43 -07:00
Geoff Paulsen
2df46aca54
Merge pull request #6792 from hoopoepg/topic/ucx_maxtag_fix-v4.0
pml/ucx: Fix the max tag and context id values - v4.0
2019-07-08 14:08:37 -05:00
Geoff Paulsen
a7608a02ca
Merge pull request #6787 from rhc54/cmr40/pmix
v4.0.x: Update PMIx to official v3.1.3 release
2019-07-08 14:07:46 -05:00
Nysal Jan K.A
b6da090090 pml/ucx: Fix the max tag and context id values
Signed-off-by: Nysal Jan K.A <jnysal@in.ibm.com>
(cherry picked from commit fe4ef147f8)
2019-07-03 16:38:07 +03:00
Ralph Castain
1d0e0557b9
v4.0.x: Update PMIx to official v3.1.3 release
Signed-off-by: Ralph Castain <rhc@pmix.org>
2019-07-02 08:56:49 -07:00
Geoff Paulsen
514e273968
Merge pull request #6770 from devreal/osc_winalloc_err_v4.0.x
OSC rdma win allocate: propagate errors to avoid deadlocks (v4.0.x)
2019-06-28 14:04:12 -05:00
Geoff Paulsen
7f26c6dc41
Merge pull request #6776 from rhc54/cmr40/pmix
Update to PMIx v3.1.3rc4
2019-06-26 13:21:31 -05:00
Howard Pritchard
6424857029
Merge pull request #6634 from jsquyres/pr/v4.0.x/ob1-fixes
v4.0.x: Cherry pick ob1 fixes from master
2019-06-26 10:49:32 -06:00
Howard Pritchard
ba2368bc0a
Merge pull request #6774 from hppritcha/topic/pr_6759_for_v4.0.x
Suggestion to fix division by zero in file view.
2019-06-26 10:48:39 -06:00
Ralph Castain
9d0adbc6bc
Update to track 32-bit support commit
Signed-off-by: Ralph Castain <rhc@pmix.org>
2019-06-26 09:31:43 -07:00
Ralph Castain
b353639573
Update to PMIx v3.1.3rc4
Will provide PR to update VERSION to final release once passes MTT

Signed-off-by: Ralph Castain <rhc@pmix.org>
2019-06-25 13:45:19 -07:00
Harald Klimach
16e1d74c8f Suggestion to fix division by zero in file view.
In common_ompi_aggregators calc_cost routine:
do not cast the real division to an int intermediately.
This patch removes the obsolete int variable c and assigns
the result of the P_a/P_x division directly to n_as.

With the intermediate int c variable, n_as gets 0 if P_a < P_x,
resulting in a division by 0 when computing n_s.

Signed-off-by: Harald Klimach <harald.klimach@uni-siegen.de>
(cherry picked from commit e222a04ae5)
2019-06-25 09:29:08 -06:00
Howard Pritchard
3da92363b3
Merge pull request #6765 from rhc54/cmr4/flux
v4.0.x: Fix finalize of flux component
2019-06-24 13:24:23 -06:00
Howard Pritchard
28d300915f
Merge pull request #6725 from bosilca/cherrypick/6683
Cherrypick/6683
2019-06-24 13:24:02 -06:00
Joseph Schuchart
c5cf3432b9 OSC rdma win allocate: synchronize error codes across shared memory group
Signed-off-by: Joseph Schuchart <schuchart@hlrs.de>
(cherry picked from commit 8f27cc26d9)
2019-06-24 17:49:26 +02:00
Ralph Castain
05fa5845bc
Fix finalize of flux component
Per patches from @SteVwonder and @garlick

Signed-off-by: Ralph Castain <rhc@pmix.org>
(cherry picked from commit d4070d5f58)
2019-06-19 06:00:02 -07:00