ports/openmpi
ports/openmpi
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Автор SHA1 Сообщение Дата
Nathaniel Graham
a1b47a333a Java Environment Variable Bindings 
Added the bindings for MPI_GET_VERSION and MPI_GET_LIBRARY_VERSION.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-23 14:52:01 -06:00
Howard Pritchard
967907fea4 Merge pull request #731 from nrgraham23/alltoallw_functions 
Alltoallw functions
 2015-07-22 12:21:01 -06:00
Nathaniel Graham
1197d2a893 Adding missed copyrights. 
I did not add the LANL copyrights to the files I touched
while fixing the javadoc errors.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-22 11:04:41 -06:00
Nathaniel Graham
11e1f09c25 White space fixes 
Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-21 16:39:59 -06:00
Nathaniel Graham
7548e342dd Java bindings for alltoallw functions. 
Includes bindings for MPI_ALLTOALLW and MPI_IALLTOALLW.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-21 16:29:22 -06:00
Gilles Gouaillardet
46a87cabf0 fix comment in ompi/mpi/c/group_{excl,incl}.c 
no code change
 2015-07-21 10:29:55 +09:00
Gilles Gouaillardet
bd60ce1655 fortran: add missing non blocking i/o files to Makefile 
fixes open-mpi/ompi@01f752a504
 2015-07-16 11:27:14 +09:00
Howard Pritchard
466c8b0159 Merge pull request #697 from edgargabriel/pr/nb-coll-part2 
pr/nb collective I/O part2
 2015-07-14 14:00:39 -06:00
Jeff Squyres
efc4c93d7a MPI_Scatter.3in: fix typo 
Thanks to Akshay Venkatesh for noticing the mistake.
 2015-07-10 20:11:39 -07:00
Nathaniel Graham
6bca7486c5 Added suppression statements. 
There are a few places where adding the @param for the variable
javadoc wants does not make sense, so I added suppression statements
in those areas.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-10 16:04:22 -06:00
Nathaniel Graham
580251e96a Fixes for javadoc warnings. 
Added missings @params and @throws as well as adding definitions for the @throws tags.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-10 12:59:45 -06:00
Nathaniel Graham
7f6d141bd6 More one sided java bindings. 
Bindings for the MPI_WIN_FLUSH_LOCAL, MPI_WIN_FLUSH_LOCAL_ALL, MPI_WIN_ALLOCATE, MPI_WIN_ALLOCATE_SHARED, and MPI_COMM_SPLIT_TYPE.  Also added several necessary constants.

Signed-off-by: Nathaniel Graham ngraham@lanl.gov
 2015-07-10 11:40:18 -06:00
Howard Pritchard
e9d6c7a910 Merge pull request #693 from nrgraham23/additional_java_bindings 
Additional java bindings
 2015-07-10 11:10:29 -06:00
Edgar Gabriel
95c144c4b6 make the f08 interface actually compile. 2015-07-09 10:58:14 -05:00
Edgar Gabriel
601e5efca8 add the manpages for the new MPI-3.1 non-blocking collective I/O operations. 2015-07-09 10:58:14 -05:00
Edgar Gabriel
19994ff60d add fortran interfaces to the new nb collective I/O functions 2015-07-09 10:58:14 -05:00
Edgar Gabriel
01f752a504 make the c interface functions compile and work and start with the fortran interface functions. 2015-07-09 10:58:13 -05:00
Edgar Gabriel
f2af8e94ff - first cut on the io interface changes 
- add the C interfaces for the new non-blocking collective I/O functions of MPI 3.1
 2015-07-09 10:58:13 -05:00
Jeff Squyres
d5e16839e9 mpi_f08: restore C/Fortran compatibility with F08 BUFFER_DETACH 
The C int/Fint interoperability code was erroneously removed when this
function was moved to the use-mpi-f08 directory.
 2015-07-08 03:55:50 -07:00
Nathaniel Graham
26c528a627 Copyright additions 
Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-07 16:14:21 -06:00
Howard Pritchard
68c69d07ff add copyrights to changed java related files 
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2015-07-07 16:10:58 -06:00
Nathaniel Graham
982a232955 Additional Java Bindings 
Java bindings for the following functions: MPI_RACCUMULATE, MPI_GET_ACCUMULATE, MPI_RGET_ACCUMULATE, MPI_WIN_LOCK_ALL, MPI_WIN_UNLOCK_ALL, MPI_WIN_SYNC, MPI_WIN_FLUSH, MPI_WIN_FLUSH_ALL, MPI_COMPARE_AND_SWAP, and MPI_FETCH_AND_OP.  Also includes Java bindings for the Operations MPI_REPLACE and MPI_NO_OP.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-07 16:04:17 -06:00
Jeff Squyres
8ff60c47cc mpi_f08: move the f08 version of buffer_detach to use-mpi-f08 
@ggouaillardet was right -- we should have put the
ompi_buffer_detach_f08() function in the use-mpi-f08 directory to
begin with.  Putting it in the mpif-h directory made it complicated as
to whether the function would be built or not (e.g., whether weak
symbols were supported or not, whether the profiling layer was
disabled or not, ...etc.).

Just put it in the use-mpi-f08 directory and always build it (when the
mpi_f08 module is built, of course), and keep it simple.
 2015-07-07 07:38:09 -07:00
Gilles Gouaillardet
9e89985f3d restore whitespaces into the pdf files 2015-07-07 09:17:00 +09:00
Howard Pritchard
fb9c218e5d Merge pull request #684 from nrgraham23/java_bindings 
ompi/java: add MPI_Rget and MPI_Rput java bindings
 2015-07-06 15:25:06 -06:00
Jeff Squyres
e28f016793 fortran only compile f08 buffer_detach once 
Since there is no profiling version of the f08 buffer_detach function
(or, more specifically, the Fortran compile does the name mangling of
MPI and PMPI to the back-end C function for us), ensure that it is
only compiled once.

Also, per Gilles' observation, the f08-related #pragmas are no longer
relevant.
 2015-07-06 09:52:27 -07:00
Jeff Squyres
4694b16256 mpi_f08: further fixes for MPI_BUFFER_DETACH 
A few minor fixes in addition to
open-mpi/ompi@bd94da7de4 and
open-mpi/ompi@fc69c0be24.
 2015-07-04 05:27:22 -07:00
Jeff Squyres
bd94da7de4 mpi_f08: fix MPI_BUFFER_DETACH interfaces 
Add an mpi_f08-specific implementation for MPI_BUFFER_DETACH.

Per MPI-3.1:3.6, p45, the buffer argument is ignored in
MPI_BUFFER_DETACH for mpif.h and the mpi module.  But in the mpi_f08
module, the buffer argument is treated like it is in the C binding.
 2015-07-03 08:56:34 -07:00
Gilles Gouaillardet
6356c4b113 mpif: fix typo in interface name 
* MPI_Comm_dup_with_info
 * MPI_Comm_split_type
 * PMPI_Comm_split_type
 2015-07-02 17:13:07 +09:00
Gilles Gouaillardet
fa50e0d712 mpi_f08: fix typo in binding name 
replace MPI_Win_flush_all_local with MPI_Win_flush_local_all
 2015-07-02 15:47:38 +09:00
Nathaniel Graham
bb5699e912 ompi/java: add MPI_Rget and MPI_Rput java bindings 
Wrote tests for ompi tests, but will commit later.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-06-30 12:05:59 -06:00
Gilles Gouaillardet
c4025f55a4 mpi_f08: add MPI_Type_size_x and misc PMPI_xxx bindings 2015-06-30 16:31:14 +09:00
Gilles Gouaillardet
18fd30a173 mpi_f08: fix MPI_FREE_MEM binding 2015-06-30 14:19:50 +09:00
Gilles Gouaillardet
13950c3ec1 mpi_f08: fix MPI_WIN_{ATTACH,DETACH} bindings 
fixes INTENT from open-mpi/ompi@9600e2bc63
 2015-06-30 12:28:23 +09:00
Gilles Gouaillardet
86bbdd2ebe mpi_f08: fix MPI_COMM_SPAWN_MULTIPLE binding 2015-06-30 11:47:45 +09:00
Jeff Squyres
fc69c0be24 mpi_f08: fix MPI_BUFFER_DETACH binding 2015-06-29 09:22:30 -07:00
Gilles Gouaillardet
e0dd9bd2e7 Fix java bindings disaster 
that commit fixes :
- open-mpi/ompi@224f97b009
- open-mpi/ompi@ade7de549c
- open-mpi/ompi@0836344673
- open-mpi/ompi@7e0581c853
- open-mpi/ompi@d948a43993
 2015-06-29 09:51:36 +09:00
Gilles Gouaillardet
d948a43993 java: fix typo in MPI_Win_attach binding 2015-06-28 09:27:19 +09:00
Gilles Gouaillardet
98bf02485d fortran: add Fortran 2008 bindings for attr_fn (MPI_COMM_DUP_FN and friends) 
Fixes open-mpi/ompi#460
 2015-06-26 15:21:30 +09:00
Gilles Gouaillardet
e701bf35cc MPI_Win_{get,set}_info : add man pages 2015-06-26 15:14:25 +09:00
Gilles Gouaillardet
6e2951e8d7 MPI_Win_{attach,detach} : add man pages 2015-06-26 15:14:25 +09:00
Gilles Gouaillardet
f7bbad96be MPI_Win_create_dynamic : add man page 2015-06-26 15:14:24 +09:00
Gilles Gouaillardet
7e0581c853 MPI_Win_{get,set}_info : add Java bindings 2015-06-26 15:10:15 +09:00
Gilles Gouaillardet
0836344673 MPI_Win_{attach,detach} : add Java bindings 2015-06-26 15:10:14 +09:00
Gilles Gouaillardet
ade7de549c MPI_Win_create_dynamic : add Java bindings 2015-06-26 15:10:14 +09:00
Ralph Castain
265cd14f60 Purge whitespace 2015-06-25 13:27:56 -07:00
Nathan Hjelm
ee36d813dc Merge pull request #657 from hjelmn/c99 
more c99 updates
 2015-06-25 11:21:09 -06:00
Nathan Hjelm
4d92c9989e more c99 updates 
This commit does two things. It removes checks for C99 required
headers (stdlib.h, string.h, signal.h, etc). Additionally it removes
definitions for required C99 types (intptr_t, int64_t, int32_t, etc).

Signed-off-by: Nathan Hjelm <hjelmn@me.com>
 2015-06-25 10:14:13 -06:00
Nathan Hjelm
e561f150d6 Merge pull request #658 from hjelmn/mpit_fixes 
Fix definition of MPI_T_pvar_get_index
 2015-06-24 16:40:25 -07:00
Nathan Hjelm
4552afff06 Fix definition of MPI_T_pvar_get_index 
The definition of MPI_T_pvar_get_index was incorrect. This commit
fixes the definition and adds a missing return code.

Signed-off-by: Nathan Hjelm <hjelmn@me.com>
 2015-06-24 17:31:26 -06:00