Add a monitoring PML, OSC and IO. They track all data exchanges between processes,
with capability to include or exclude collective traffic. The monitoring infrastructure is
driven using MPI_T, and can be tuned of and on any time o any communicators/files/windows.
Documentations and examples have been added, as well as a shared library that can be
used with LD_PRELOAD and that allows the monitoring of any application.
Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* add ability to querry pml monitorinting results with MPI Tools interface
using performance variables "pml_monitoring_messages_count" and
"pml_monitoring_messages_size"
Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
* Fix a convertion problem and add a comment about the lack of component
retain in the new component infrastructure.
Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
* Allow the pvar to be written by invoking the associated callback.
Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
* Various fixes for the monitoring.
Allocate all counting arrays in a single allocation
Don't delay the initialization (do it at the first add_proc as we
know the number of processes in MPI_COMM_WORLD)
Add a choice: with or without MPI_T (default).
Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
* Cleanup for the monitoring module.
Fixed few bugs, and reshape the operations to prepare for
global or communicator-based monitoring. Start integrating
support for MPI_T as well as MCA monitoring.
Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
* Adding documentation about how to use pml_monitoring component.
Document present the use with and without MPI_T.
May not reflect exactly how it works right now, but should reflects
how it should work in the end.
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Change rank into MPI_COMM_WORLD and size(MPI_COMM_WORLD) to global variables in pml_monitoring.c.
Change mca_pml_monitoring_flush() signature so we don't need the size and rank parameters.
Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
* Improve monitoring support (including integration with MPI_T)
Use mca_pml_monitoring_enable to check status state. Set mca_pml_monitoring_current_filename iif parameter is set
Allow 3 modes for pml_monitoring_enable_output: - 1 : stdout; - 2 : stderr; - 3 : filename
Fix test : 1 for differenciated messages, >1 for not differenciated. Fix output.
Add documentation for pml_monitoring_enable_output parameter. Remove useless parameter in example
Set filename only if using mpi tools
Adding missing parameters for fprintf in monitoring_flush (for output in std's cases)
Fix expected output/results for example header
Fix exemple when using MPI_Tools : a null-pointer can't be passed directly. It needs to be a pointer to a null-pointer
Base whether to output or not on message count, in order to print something if only empty messages are exchanged
Add a new example on how to access performance variables from within the code
Allocate arrays regarding value returned by binding
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Add overhead benchmark, with script to use data and create graphs out of the results
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Fix segfault error at end when not loading pml
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Start create common monitoring module. Factorise version numbering
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Fix microbenchmarks script
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Improve readability of code
NULL can't be passed as a PVAR parameter value. It must be a pointer to NULL or an empty string.
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Add osc monitoring component
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Add error checking if running out of memory in osc_monitoring
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Resolve brutal segfault when double freeing filename
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Moving to ompi/mca/common the proper parts of the monitoring system
Using common functions instead of pml specific one. Removing pml ones.
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Add calls to record monitored data from osc. Use common function to translate ranks.
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Fix test_overhead benchmark script distribution
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Fix linking library with mca/common
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Add passive operations in monitoring_test
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Fix from rank calculation. Add more detailed error messages
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Fix alignments. Fix common_monitoring_get_world_rank function. Remove useless trailing new lines
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Fix osc_monitoring mget_message_count function call
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Change common_monitoring function names to respect the naming convention. Move to common_finalize the common parts of finalization. Add some comments.
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Add monitoring common output system
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Add error message when trying to flush to a file, and open fails. Remove erroneous info message when flushing wereas the monitoring is already disabled.
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Consistent output file name (with and without MPI_T).
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Always output to a file when flushing at pvar_stop(flush).
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Update the monitoring documentation.
Complete informations from HowTo. Fix a few mistake and typos.
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Use the world_rank for printf's.
Fix name generation for output files when using MPI_T. Minor changes in benchmarks starting script
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Clean potential previous runs, but keep the results at the end in order to potentially reprocess the data. Add comments.
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Add security check for unique initialization for osc monitoring
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Clean the amout of symbols available outside mca/common/monitoring
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Remove use of __sync_* built-ins. Use opal_atomic_* instead.
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Allocate the hashtable on common/monitoring component initialization. Define symbols to set the values for error/warning/info verbose output. Use opal_atomic instead of built-in function in osc/monitoring template initialization.
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Deleting now useless file : moved to common/monitoring
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Add histogram ditribution of message sizes
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Add histogram array of 2-based log of message sizes. Use simple call to reset/allocate arrays in common_monitoring.c
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Add informations in dumping file. Separate per category (pt2pt/osc/coll (to come)) monitored data
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Add coll component for collectives communications monitoring
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Fix warning messages : use c_name as the magic id is not always defined. Moreover, there was a % missing. Add call to release underlying modules. Add debug info messages. Add warning which may lead to further analysis.
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Fix log10_2 constant initialization. Fix index calculation for histogram array.
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Add debug info messages to follow more easily initialization steps.
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Group all the var/pvar definitions to common_monitoring. Separate initial filename from the current on, to ease its lifetime management. Add verifications to ensure common is initialized once only. Move state variable management to common_monitoring.
monitoring_filter only indicates if filtering is activated.
Fix out of range access in histogram.
List is not used with the struct mca_monitoring_coll_data_t, so heritate only from opal_object_t.
Remove useless dead code.
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Fix invalid memory allocation. Initialize initial_filename to empty string to avoid invalid read in mca_base_var_register.
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Don't install the test scripts.
Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Fix missing procs in hashtable. Cache coll monitoring data.
* Add MCA_PML_BASE_FLAG_REQUIRE_WORLD flag to the PML layer.
* Cache monitoring data relative to collectives operations on creation.
* Remove double caching.
* Use same proc name definition for hash table when inserting and
when retrieving.
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Use intermediate variable to avoid invalid write while retrieving ranks in hashtable.
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Add missing release of the last element in flush_all. Add release of the hashtable in finalize.
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Use a linked list instead of a hashtable to keep tracks of communicator data. Add release of the structure at finalize time.
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Set world_rank from hashtable only if found
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Use predefined symbol from opal system to print int
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Move collective monitoring data to a hashtable. Add pvar to access the monitoring_coll_data. Move functions header to a private file only to be used in ompi/mca/common/monitoring
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Fix pvar registration. Use OMPI_ERROR isntead of -1 as returned error value. Fix releasing of coll_data_t objects. Affect value only if data is found in the hashtable.
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Add automated check (with MPI_Tools) of monitoring.
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Fix procs list caching in common_monitoring_coll_data_t
* Fix monitoring_coll_data type definition.
* Use size(COMM_WORLD)-1 to determine max number of digits.
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Add linking to Fortran applications for LD_PRELOAD usage of monitoring_prof
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Add PVAR's handles. Clean up code (visibility, add comments...). Start updating the documentation
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Fix coll operations monitoring. Update check_monitoring accordingly to the added pvar. Fix monitoring array allocation.
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Documentation update.
Update and then move the latex and README documentation to a more logical place
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Aggregate monitoring COLL data to the generated matrix. Update documentation accordingly.
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Fix monitoring_prof (bad variable.vector used, and wrong array in PMPI_Gather).
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Add reduce_scatter and reduce_scatter_block monitoring. Reduce memory footprint of monitoring_prof. Unify OSC related outputs.
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Add the use of a machine file for overhead benchmark
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Check for out-of-bound write in histogram
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Fix common_monitoring_cache object init for MPI_COMM_WORLD
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Add RDMA benchmarks to test_overhead
Add error file output. Add MPI_Put and MPI_Get results analysis. Add overhead computation for complete sending (pingpong / 2).
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Add computation of average and median of overheads. Add comments and copyrigths to the test_overhead script
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Add technical documentation
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Adapt to the new definition of communicators
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Update expected output in test/monitoring/monitoring_test.c
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Add dumping histogram in edge case
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Adding a reduce(pml_monitoring_messages_count, MPI_MAX) example
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Add consistency in header inclusion.
Include ompi/mpi/fortran/mpif-h/bindings.h only if needed.
Add sanity check before emptying hashtable.
Fix typos in documentation.
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* misc monitoring fixes
* test/monitoring: fix test when weak symbols are not available
* monitoring: fix a typo and add a missing file in Makefile.am
and have monitoring_common.h and monitoring_common_coll.h included in the distro
* test/monitoring: cleanup all tests and make distclean a happy panda
* test/monitoring: use gettimeofday() if clock_gettime() is unavailable
* monitoring: silence misc warnings (#3)
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
* Cleanups.
Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
* Changing int64_t to size_t.
Keep the size_t used accross all monitoring components.
Adapt the documentation.
Remove useless MPI_Request and MPI_Status from monitoring_test.c.
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Add parameter for RMA test case
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Clean the maximum bound computation for proc list dump.
Use ptrdiff_t instead of OPAL_PTRDIFF_TYPE to reflect the changes from commit fa5cd0dbe5.
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Add communicator-specific monitored collective data reset
Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
* Add monitoring scripts to the 'make dist'
Also install them in the build and the install directories.
Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
Remove the opal_ignore from the RML/OFI component, but disable that component unless the user specifically requests it via the "rml_ofi_desired=1" MCA param. This will let us test compile in various environments without interfering with operations while we continue to debug
Fix an error when computing the number of infos during server init
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
This commit cleans up code in opal to use OPAL_LIST_FOREACH(_SAFE),
OPAL_LIST_DESTRUCT, and OPAL_LIST_RELEASE.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
This now passes the loop test, and so we believe it resolves the random hangs in finalize.
Changes in PMIx master that are included here:
* Fixed a bug in the PMIx_Get logic
* Fixed self-notification procedure
* Made pmix_output functions thread safe
* Fixed a number of thread safety issues
* Updated configury to use 'uname -n' when hostname is unavailable
Work on cleaning up the event handler thread safety problem
Rarely used functions, but protect them anyway
Fix the last part of the intercomm problem
Ensure we don't cover any PMIx calls with the framework-level lock.
Protect against NULL argv comm_spawn
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
Hostname and PID are output as a message prefix in many places in
our code. Their printf-formats were either `[%s:%d]` or `[%s:%05d]`.
This commit changes `[%s:%d]` to `[%s:%05d]`. The latter was more
widely used in our code (including OPAL output system and the signal
handler).
Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
Parts of the pmix2x component called the event_* functions directly
instead of the opal_event_* wrappers. This is fine as long as we are
using libevent but becomes a problem with other event libraries.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
Start updating the various mappers to the new procedure. Remove the stale lama component as it is now very out-of-date. Bring round_robin and PPR online, and modify the mindist component (but cannot test/debug it).
Remove unneeded test
Fix memory corruption by re-initializing variable to NULL in loop
Resolve the race condition identified by @ggouaillardet by resetting the
mapped flag within the same event where it was set. There is no need to
retain the flag beyond that point as it isn't used again.
Add a new job attribute ORTE_JOB_FULLY_DESCRIBED to indicate that all the job information (including locations and binding) is included in the launch message. Thus, the backend daemons do not need to do any map computation for the job. Use this for the seq, rankfile, and mindist mappers until someone decides to update them.
Note that this will maintain functionality, but means that users of those three mappers will see large launch messages and less performant scaling than those using the other mappers.
Have the mindist module add procs to the job's proc array as it is a fully described module
Protect the hnp-not-in-allocation case
Per path suggested by Gilles - protect the HNP node when it gets added in the absence of any other allocation or hostfile
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
Finally Merging this in. MPI_*_get_info/set_info().
Targeting v3.1 release. @hjelmn were you interested in switching some internal pieces to begin using this? Should we target v3.1 (or whatever we call the Oct 15th release?)
The expected sequence of events for processing info during object creation
is that if there's an incoming info arg, it is opal_info_dup()ed into the obj
at obj->s_info first. Then interested components register callbacks for
keys they want to know about using opal_infosubscribe_infosubscribe().
Inside info_subscribe_subscribe() the specified callback() is called with
whatever matching k/v is in the object's info, or with the default. The
return string from the callback goes into the new k/v stored in info, and
the input k/v is saved as __IN_<key>/<val>. It's saved the same way
whether the input came from info or whether it was a default. A null return
from the callback indicates an ignored key/val, and no k/v is stored for
it, but an __IN_<key>/<val> is still kept so we still have access to the
original.
At MPI_*_set_info() time, opal_infosubscribe_change_info() is used. That
function calls the registered callbacks for each item in the provided info.
If the callback returns non-null, the info is updated with that k/v, or if
the callback returns null, that key is deleted from info. An __IN_<key>/<val>
is saved either way, and overwrites any previously saved value.
When MPI_*_get_info() is called, opal_info_dup_mpistandard() is used, which
allows relatively easy changes in interpretation of the standard, by looking
at both the <key>/<val> and __IN_<key>/<val> in info. Right now it does
1. includes system extras, eg k/v defaults not expliclty set by the user
2. omits ignored keys
3. shows input values, not callback modifications, eg not the internal values
Currently the callbacks are doing things like
return some_condition ? "true" : "false"
that is, returning static strings that are not to be freed. If the return
strings start becoming more dynamic in the future I don't see how unallocated
strings could support that, so I'd propose a change for the future that
the callback()s registered with info_subscribe_subscribe() do a strdup on
their return, and we change the callers of callback() to free the strings
it returns (there are only two callers).
Rough outline of the smaller changes spread over the less central files:
comm.c
initialize comm->super.s_info to NULL
copy into comm->super.s_info in comm creation calls that provide info
OBJ_RELEASE comm->super.s_info at free time
comm_init.c
initialize comm->super.s_info to NULL
file.c
copy into file->super.s_info if file creation provides info
OBJ_RELEASE file->super.s_info at free time
win.c
copy into win->super.s_info if win creation provides info
OBJ_RELEASE win->super.s_info at free time
comm_get_info.c
file_get_info.c
win_get_info.c
change_info() if there's no info attached (shouldn't happen if callbacks
are registered)
copy the info for the user
The other category of change is generally addressing compiler warnings where
ompi_info_t and opal_info_t were being used a little too interchangably. An
ompi_info_t* contains an opal_info_t*, at &(ompi_info->super)
Also this commit updates the copyrights.
Signed-off-by: Mark Allen <markalle@us.ibm.com>
ompi_communicator_t, ompi_win_t, ompi_file_t all have a super class of type opal_infosubscriber_t instead of a base/super type of opal_object_t (in previous code comm used c_base, but file used super). It may be a bit bold to say that being a subscriber of MPI_Info is the foundational piece that ties these three things together, but if you object, then I would prefer to turn infosubscriber into a more general name that encompasses other common features rather than create a different super class. The key here is that we want to be able to pass comm, win and file objects as if they were opal_infosubscriber_t, so that one routine can heandle all 3 types of objects being passed to it.
MPI_INFO_NULL is still an ompi_predefined_info_t type since an MPI_Info is part of ompi but the internal details of the underlying information concept is part of opal.
An ompi_info_t type still exists for exposure to the user, but it is simply a wrapper for the opal object.
Routines such as ompi_info_dup, etc have all been moved to opal_info_dup and related to the opal directory.
Fortran to C translation tables are only used for MPI_Info that is exposed to the application and are therefore part of the ompi_info_t and not the opal_info_t
The data structure changes are primarily in the following files:
communicator/communicator.h
ompi/info/info.h
ompi/win/win.h
ompi/file/file.h
The following new files were created:
opal/util/info.h
opal/util/info.c
opal/util/info_subscriber.h
opal/util/info_subscriber.c
This infosubscriber concept is that communicators, files and windows can have subscribers that subscribe to any changes in the info associated with the comm/file/window. When xxx_set_info is called, the new info is presented to each subscriber who can modify the info in any way they want. The new value is presented to the next subscriber and so on until all subscribers have had a chance to modify the value. Therefore, the order of subscribers can make a difference but we hope that there is generally only one subscriber that cares or modifies any given key/value pair. The final info is then stored and returned by a call to xxx_get_info.
The new model can be seen in the following files:
ompi/mpi/c/comm_get_info.c
ompi/mpi/c/comm_set_info.c
ompi/mpi/c/file_get_info.c
ompi/mpi/c/file_set_info.c
ompi/mpi/c/win_get_info.c
ompi/mpi/c/win_set_info.c
The current subscribers where changed as follows:
mca/io/ompio/io_ompio_file_open.c
mca/io/ompio/io_ompio_module.c
mca/osc/rmda/osc_rdma_component.c (This one actually subscribes to "no_locks")
mca/osc/sm/osc_sm_component.c (This one actually subscribes to "blocking_fence" and "alloc_shared_contig")
Signed-off-by: Mark Allen <markalle@us.ibm.com>
Conflicts:
AUTHORS
ompi/communicator/comm.c
ompi/debuggers/ompi_mpihandles_dll.c
ompi/file/file.c
ompi/file/file.h
ompi/info/info.c
ompi/mca/io/ompio/io_ompio.h
ompi/mca/io/ompio/io_ompio_file_open.c
ompi/mca/io/ompio/io_ompio_file_set_view.c
ompi/mca/osc/pt2pt/osc_pt2pt.h
ompi/mca/sharedfp/addproc/sharedfp_addproc.h
ompi/mca/sharedfp/addproc/sharedfp_addproc_file_open.c
ompi/mca/topo/treematch/topo_treematch_dist_graph_create.c
ompi/mpi/c/lookup_name.c
ompi/mpi/c/publish_name.c
ompi/mpi/c/unpublish_name.c
opal/mca/mpool/base/mpool_base_alloc.c
opal/util/Makefile.am
