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20145 Коммитов

Автор SHA1 Сообщение Дата
Mike Dubman
f9e813a003 OSHMEM: revert r31412, it did not pass jenkins
This commit was SVN r31414.

The following SVN revision numbers were found above:
  r31412 --> open-mpi/ompi@b0ade11ae4
2014-04-16 20:00:34 +00:00
Mike Dubman
b354dc92f2 OSHMEM: align with OSHMEM SPEC v1.0
- add some missing APIs
- change signature od shmem_finalize to comply with SGI spec

fixed by Roman, reviewed by Igor/Miked

Refs trac:4520

This commit was SVN r31413.

The following Trac tickets were found above:
  Ticket 4520 --> https://svn.open-mpi.org/trac/ompi/ticket/4520
2014-04-16 18:01:17 +00:00
Mike Dubman
b0ade11ae4 OSHMEM: fix compilation error with pathscale
Thanks to  Ake Sandgren for patch

reviewed by Roman/Miked

cmr=v1.8.1:reviewer=ompi-rm1.8

This commit was SVN r31412.
2014-04-16 17:58:22 +00:00
Jeff Squyres
ae43ae4d17 MPI_Type_indexed.3in: fix array_of_displacements type
This man page contains the prototype and descriptions for both
MPI_TYPE_INDEXED and MPI_TYPE_CREATE_HINDEXED.  Bastian Beischer
noticed that the type of the array_of_displacements argument in the
MPI_TYPE_CREATE_HINDEXED was wrong.

Also, a minor update to MPI_Type_hindexed.3in: indicate that the C
type is MPI_Aint and the Fortran type is INTEGER (which is why this
function was deprecated and then deleted by the MPI Forum!).

cmr=v1.8.1:reviewer=dgoodell

This commit was SVN r31411.
2014-04-16 15:25:37 +00:00
Jeff Squyres
1a274a45b2 Add "mpiteam" user (for git mirror script)
This commit was SVN r31410.
2014-04-16 10:28:56 +00:00
Jeff Squyres
0a5891760d Add script that re-generates .gitignore_global and .hgignore_global.
Also update the crontab file to show that it's running nightly at 1am.

This commit was SVN r31409.
2014-04-15 22:31:45 +00:00
MPI Team
5e4371139d Replace top-level .gitignore with .gitignore_global, and add .hgignore_global
The rationale for this name switch is as follows:

0. These two files will be automatically kept up-to-date with
   svn:ignore properties in the tree via a cron script.  Meaning: if a
   developer makes changes to svn:ignore properties, those changes
   will automatically be reflected in .gitignore_global /
   .hgignore_global within a fixed time period (at the moment,
   nightly).

1. Developers who make pure clones of git/hg OMPI repos can copy the
   relevant .*ignore_global file to .*ignore.  This gives them a good
   starting point for a fully-populated ignore file.  However, since
   the upstream _global file may change over time, developers will
   likely want to keep them in sync with their local .*ignore file.
   Here's two possibilities:

   1a. Maintain a single .*ignore file and manually merge in changes
       from the _global file upstream.

   1b. Maintain their local ignores in a .*ignore_local file, and
       periodically "cat .*ignore_global .*ignore_local > *.ignore"
       (e.g., whenever the upstream _global file changes).

2. Developers who make svn+clone checkouts can do similar things as
   listed in 1, with the added feature that they cannot make the
   mistake of committing their locally-modified .*ignore file back to
   SVN (presumably containing references to files that do not exist in
   SVN), since the .*ignore file is not in SVN.

Point #2 is probably the    stronger of these two reasons -- prevent
mistakes of developers accidentally committing locally-modified
.*ignore files back to SVN.

This commit was SVN r31408.
2014-04-15 22:24:44 +00:00
Ralph Castain
2fa1d15555 Cleanup the ignores
This commit was SVN r31407.
2014-04-15 22:00:54 +00:00
Ralph Castain
22348f7d62 As we do for Hg, ignore .git and .gitignore_local. Also ignore any orcm directory just to keep things clean
This commit was SVN r31406.
2014-04-15 22:00:17 +00:00
Ralph Castain
0bfce321cd Remove orcm-related platform files and ignore them from now on
This commit was SVN r31405.
2014-04-15 21:58:57 +00:00
Ralph Castain
0f02ba21df Remove --enable-sensors configuration option
This commit was SVN r31404.
2014-04-15 21:58:29 +00:00
Ralph Castain
a368e84e70 Per the RFC, remove the sensor framework from the ORTE code area, relocating it offsite to the ORCM code area. Also update some ignores to ensure we don't pickup crosstalk in components
This commit was SVN r31403.
2014-04-15 21:48:24 +00:00
Rolf vandeVaart
8897e2f5bb Fix typo error in commit r31388.
This commit was SVN r31398.

The following SVN revision numbers were found above:
  r31388 --> open-mpi/ompi@ccb33ff811
2014-04-15 19:50:54 +00:00
Jeff Squyres
75ed50c9bb build-*ignore.pl: add -o option to specify what file to write
Add some getopt options for both build-gitignore.pl and
build-hgignore.pl:

 -v: be a little verbose
 -h: show a quick help message
 -o: specify the output file to write

build-hgignore.pl defaults to writing .hgignore, and
build-gitignore.pl defaults to writing .gitignore.  But you can use -o
to specify writing a different filename.

This commit was SVN r31397.
2014-04-15 16:58:46 +00:00
Ryan Grant
6d577a2663 Update to atomics selection, fix octal issue and rename defines
This commit was SVN r31396.
2014-04-15 15:40:30 +00:00
Jeff Squyres
d46db26721 ompi_config.h: no need to AC_CONFIG_HEADER this file
Nothing is generated in this file; this commit essentially just
renames ompi_config.h.in -> ompi_config.h.

cmr=v1.8.1:reviewer=dgoodell

This commit was SVN r31395.
2014-04-15 15:38:49 +00:00
Jeff Squyres
fc91ed7fc0 ignore generators: sort the dirlist for repeatable output
Sort the output from reading directory contents so that the generated
.gitignore and .hgignore files will be much more consistent (and
friendly to change from subsequent runs, especially when they are
committed to SVN/git/hg repos).

This commit was SVN r31394.
2014-04-15 13:34:07 +00:00
Ryan Grant
e67ca81dca Fixing atomics selection issue, to be CMR'd after it passes the nightly tests
This commit was SVN r31393.
2014-04-15 13:17:04 +00:00
Mike Dubman
f06953236e OSHMEM: added missing files to changeset r31390
This commit was SVN r31392.

The following SVN revision numbers were found above:
  r31390 --> open-mpi/ompi@a3f83616fc
2014-04-15 07:23:39 +00:00
Oscar Vega-Gisbert
5a21790caa Java: improve access to Java arrays.
This commit was SVN r31391.
2014-04-14 21:29:13 +00:00
Mike Dubman
a3f83616fc OSHMEM: align profiling interface with SPEC 1.0
Now we should be full compliant to OSHMEM SPEC 1.0

fixed by Roman reviewed by Miked

cmr=v1.8.1:reviewer=ompi-rm1.8

This commit was SVN r31390.
2014-04-14 20:51:06 +00:00
Jeff Squyres
c0f3d80c98 Change this filename back (i.e., revert r31375).
It's a singular filename because there's only 1 interface in the
file.  Also, r31375 missed updating the name in a few places, and
broke the build for compilers that supported the mpi_f08 interface.

This commit was SVN r31389.

The following SVN revision numbers were found above:
  r31375 --> open-mpi/ompi@fe1935de14
2014-04-14 19:51:06 +00:00
Nathan Hjelm
ccb33ff811 btl: Use C99 sub-object naming when initializing BTL components
Two things to note:

 - This change will allow us to expand the BTL interface without
   having to worry about modifying BTLs that will not support the new
   interfaces. More on this will come later this year as part of the
   1.9 series.

 - C99 guarantees that uninitialed members of structs declared outside
   of functions (DATA binary section) will be initialized with
   0's. This allows us to drop stuff like .btl_flags = 0, or .btl_get
   = NULL.

This commit was SVN r31388.
2014-04-14 19:29:26 +00:00
George Bosilca
1cddb2aae8 Correctly save the displacement for the case where the convertor is not
completed. As we need to have the right displacement at the beginning
of the next call, we should save the position relative to the beginning
of the buffer and not to the last loop.

This commit was SVN r31387.
2014-04-14 04:46:58 +00:00
Ralph Castain
bbdbc5f8a8 Per suggestion from George, use a pipe for terminating the thread.
Refs trac:4510

This commit was SVN r31381.

The following Trac tickets were found above:
  Ticket 4510 --> https://svn.open-mpi.org/trac/ompi/ticket/4510
2014-04-14 01:02:46 +00:00
George Bosilca
373f97cdae Remove a non-necessary label.
This commit was SVN r31380.
2014-04-14 00:20:30 +00:00
Mike Dubman
325f4e0449 OSHMEM: sshmem verbs: ofed api changes
Use only contig allocator if shared_mr() is not supported
Fixes ibv_exp_reg_mr() parameters passing.
Fixes incorrect handling of sshmem_verbs_hca_name option.

fixed by AlexM, reviewed by Mike

cmr=v1.8.1:reviewer=ompi-rm1.8

This commit was SVN r31379.
2014-04-13 16:54:18 +00:00
Yossi Etigin
7efb724d7b osc/rdma: fix deadlock with put_long protocol.
When sending PUT_LONG, the data is sent before headers, and sometimes 
the header is not flushed immediately. This creates a lot of unexpected 
receives in the peer, since it would posts a receive only when gets the 
header, which makes it run out of receive buffers. When the sender 
eventually flushes the window, the receiver already has no buffers to 
receive the header, which causes a deadlock.

The fix is to always flush the headers when doing put_long.

cmr=v1.8.1:reviewer=hjelmn

This commit was SVN r31378.
2014-04-13 16:24:56 +00:00
Ralph Castain
deff85ffc3 Prevent a segfault if we encounter an error while parsing a hostfile. Don't issue and error_log output as the hostfile code already prints an error message
Thanks to Tetsuya Mishima for the patch. Reviewed ok by rhc.

RM-approved

cmr=v1.8.1:reviewer=ompi-gk1.8

This commit was SVN r31377.
2014-04-12 21:32:10 +00:00
Ralph Castain
2d8dff837c Ensure we properly terminate the listening thread prior to exiting, but do so in a way that doesn't make us wait for select to timeout.
Refs trac:4510

This commit was SVN r31376.

The following Trac tickets were found above:
  Ticket 4510 --> https://svn.open-mpi.org/trac/ompi/ticket/4510
2014-04-12 15:01:24 +00:00
Ralph Castain
fe1935de14 Rename file to match pattern used in other names and in Makefile.am
Don't know if this needs to go to 1.8.1, but will cmr it and leave for Jeff to decide

cmr=v1.8.1:reviewer=jsquyres

This commit was SVN r31375.
2014-04-12 14:43:20 +00:00
Jeff Squyres
ed32143dc5 fortran: remove warning that compiling the "mpi" module takes a long time
Since we only builds the "small" size of the "mpi" module any more, it
does not take a long time to compile.  So remove the warning that is
emitted.

Also remove a vestage of Windows support that was leftover in the
Fortran area (i.e., building mpi.obj).

This commit was SVN r31374.
2014-04-11 21:06:43 +00:00
Jeff Squyres
d2d28710ba fortran: Remove the gfortran-4.9-disabling configry
The bug in #4157 has now been fixed, so remove the configure test that
disabled mpi_f08 functionality for gfortran 4.9.

Fixes trac:4157

cmr=v1.8.1:ticket=trac:4512

This commit was SVN r31373.

The following Trac tickets were found above:
  Ticket 4157 --> https://svn.open-mpi.org/trac/ompi/ticket/4157
  Ticket 4512 --> https://svn.open-mpi.org/trac/ompi/ticket/4512
2014-04-11 21:04:04 +00:00
Jeff Squyres
5551e78275 fortran: Separate pre-defined attribute and conversion interfaces
Differentiate the pre-defined attribute and conversion interfaces into
those with INTEGER handles and those with TYPE(MPI_*) handles.

Refs trac:4157

cmr=v1.8.1:ticket=trac:4512

This commit was SVN r31372.

The following Trac tickets were found above:
  Ticket 4157 --> https://svn.open-mpi.org/trac/ompi/ticket/4157
  Ticket 4512 --> https://svn.open-mpi.org/trac/ompi/ticket/4512
2014-04-11 21:01:16 +00:00
Jeff Squyres
65b95e2844 mpi_f08: pass function pointers from Fortran to C properly
Use type(c_funptr) to "cast" the fortran function pointers to
arbitrary C pointers.  In C, we then pick up the appropriate function
pointer type.

Tested with ifort 14.0.2 and gfortran 4.9 snapshot (which is what
identified that the previous method of passing function pointers was
not Fortran'08-compliant).

Refs trac:4157

This commit was SVN r31371.

The following Trac tickets were found above:
  Ticket 4157 --> https://svn.open-mpi.org/trac/ompi/ticket/4157
2014-04-11 20:56:11 +00:00
George Bosilca
7853f82567 Reshape all the packing/unpacking functions to use the same skeleton. Rewrite the
generic_unpacking to take advantage of the same capabilitites.

This commit was SVN r31370.
2014-04-11 20:06:56 +00:00
Jeff Squyres
0ceebe16f2 mpi.h.in: We're long past the v1.5 series; this comment can go away
This commit was SVN r31369.
2014-04-11 15:17:48 +00:00
Ralph Castain
9b30b2b783 Shave some time off of mpirun's operation by not waiting for the listener thread to terminate before exiting
cmr=v1.8.1:reviewer=rhc

This commit was SVN r31368.
2014-04-11 04:16:28 +00:00
Jeff Squyres
619dd71a92 mpi.h.in: fix comment to match code
Thanks to Lisandro Dalcin for noticing.

This commit was SVN r31366.
2014-04-10 17:29:14 +00:00
Jeff Squyres
12e82daa78 mpi_f08: Fix param name and string length for MPI_GET_LIBRARY_VERSION
Junchao Zhang pointed out to me that we had the wrong parameter name
and string length specification for the "version" parameter.  This
matters because Fortran allows passing by parameter name
(vs. parameter ordering).  Specifically, we had the interface as:

{{{
subroutine MPI_Get_library_version_f08(name,resultlen,ierror)
   character(len=MPI_MAX_PROCESSOR_NAME), intent(out) :: name
...etc.
}}}

but it should be:

{{{
subroutine MPI_Get_library_version_f08(version,resultlen,ierror)
   character(len=MPI_MAX_LIBRARY_VERSION_STRING), intent(out) :: version
...etc.
}}}

Thankfully, MPI_MAX_PROCESSOR_NAME and MPI_MAX_LIBRARY_VERSION_STRING
are both 255 in OMPI, so there's no ABI issue caused by changing the
length from MMPN --> MMLVS.

The ABI is also unaffected by the parameter name change: if you
compile/link an MPI application calling MPI_GET_LIBRARY_VERSION with
1.8, it'll still run-time link with this change.

However, if an MPI program compiled using parameter name passing with
the old/incorrect parameter name ("name"), it won't be able to compile
with the new/correct parameter name ("version").  But this will only
happen for an incorrect MPI application (because the MPI-3 mandated
parameter name is "version", not "name"), so they deserve what they
get.

cmr=v1.8.1:reviewer=dgoodell

This commit was SVN r31365.
2014-04-10 14:45:36 +00:00
Jeff Squyres
6521dcc4f1 Trivial defensive programming/style update: use {}, even for 1-line blocks.
This commit was SVN r31361.
2014-04-09 16:28:31 +00:00
Jeff Squyres
0a348ac2e2 Oops -- the last commit moved the "update www.open-mpi.org" script
(i.e., the script that fires via cron every 15 mins to "git pull" from
the github ompi-www repo).

This commit moves the mercurial mirroring script to the
"infrastructure" directory.

This commit was SVN r31360.
2014-04-09 14:30:16 +00:00
Jeff Squyres
422597e885 Move mercurial mirror script to the infrastructure directory; it's not
really "nightly" scripting.

Also, the crontab files were already moved to the infrastructure
directory; forgot to commit their removals from the "nightly"
directory.

This commit was SVN r31359.
2014-04-09 14:25:33 +00:00
Jeff Squyres
6d61f1edcd Add some more scripts and information that is used in the OMPI project
infrastructure.

This commit was SVN r31358.
2014-04-09 13:52:45 +00:00
Jeff Squyres
df311b82aa Make this script be executable
This commit was SVN r31357.
2014-04-09 13:47:45 +00:00
Jeff Squyres
256ef772fa Add Ryan Grant to the AUTHORS list.
Now that Ryan has a commit, he needs to be added to AUTHORS so that
git mirroring can continue properly.

This commit was SVN r31356.
2014-04-09 10:08:39 +00:00
Jeff Squyres
728dec2cf5 Record the crontabs for the mpiteam user on both jaguar and lion at IU.
This commit was SVN r31355.
2014-04-09 10:04:50 +00:00
Nathan Hjelm
7aece0a7fd osc/sm: fix bugs in both the passive and active target paths
While testing one-sided on LANL systems I found a couple more OSC
bugs that were not caught during the initial testing:

 - In the passive target code we read the read lock count as a
   char instead of the intended uint32_t. This causes lock to
   lockup when using shared locks after 127 iterations.

 - The post code used the wrong group when trying to increment post
   counters. This causes a segmentation fault.

 - Both the post and wait code used the wrong check in the inner
   loop leading to an infinite loop.

cmr=v1.8.1:reviewer=jsquyres

This commit was SVN r31354.
2014-04-08 21:55:00 +00:00
Nathan Hjelm
a31bfbeb2c osc/rdma: fix typo in get accumulate path
There was a typo in the ompi_osc_gacc_long_start that was causing a
segmentation fault when executing long get accumulate operations.

cmr=v1.8.1:reviewer=jsquyres

This commit was SVN r31353.
2014-04-08 21:54:52 +00:00
Nathan Hjelm
9df795d1dd plm/alps: silence annoying warning message when using Cray PMI 3.x or
newer

This commit adds a workaround for messages printed by the Cray PMI library
when launching using mpirun. We are still talking with Cray to find a
better fix but this will silence the warnings for now.

cmr=v1.8.1:reviewer=manjugv

This commit was SVN r31352.
2014-04-08 21:54:10 +00:00