Many of the OPAL_ENABLE_FT should be OPAL_ENABLE_FT_CR, so fix those.
The OPAL Layer INC should call opal_output on restart so that it can refresh the string it prints to reflect the current pid/hostname which may have changed.
This commit was SVN r22824.
- Delete unnecessary header files using
contrib/check_unnecessary_headers.sh after applying
patches, that include headers, being "lost" due to
inclusion in one of the now deleted headers...
In total 817 files are touched.
In ompi/mpi/c/ header files are moved up into the actual c-file,
where necessary (these are the only additional #include),
otherwise it is only deletions of #include (apart from the above
additions required due to notifier...)
- To get different MCAs (OpenIB, TM, ALPS), an earlier version was
successfully compiled (yesterday) on:
Linux locally using intel-11, gcc-4.3.2 and gcc-SVN + warnings enabled
Smoky cluster (x86-64 running Linux) using PGI-8.0.2 + warnings enabled
Lens cluster (x86-64 running Linux) using Pathscale-3.2 + warnings enabled
This commit was SVN r21096.
FIN message to the pending list when the send fails. Therefore, any
upper level function is not required to add it.
Make sure we don't send the FIN twice.
This commit was SVN r20952.
two of my testing machines. The fix require both commits!
This commit was SVN r20947.
The following SVN revision numbers were found above:
r20946 --> open-mpi/ompi@e2bb4c9b8f
we returned the pck before coping the values out. With this change
it seems to work at least on two architectures (even with the
mpool size set back to 0).
This commit was SVN r20946.
opal layer.
Add a check against a maximum (actually get rid of ifs internally to
opal_bitmap.c) -- the functionality to set the current maximum size
opal_bitmap_set_max_size() is currently only used in attribute.c
to set the maximum OMPI_FORTRAN_HANDLE_MAX...
Tested on linux/x86-64 with intel-tests with all_tests_no_perf_f
run with 6 procs.
Let's look into MTT as well...
This commit was SVN r20708.
I'm unable to split it in two parts, my patch and Edgar's one. So I just update
copyright information for both of us.
What this patch do:
- it use the unexpected queue create by commit r19562 to dispatch the
unexpected message to the right communicator (once this communicator
is created and initialized).
- delay the PML comm_add until we have the context_id for the new communicator.
- only do the PML comm_add on processes that really belong to the new
communicator. Please read the lengthy comment in the source code for the
reason behind this.
This commit was SVN r19929.
The following SVN revision numbers were found above:
r19562 --> open-mpi/ompi@acd3406aa7
There is still a problem with OpenIB and threads (external to C/R functionality). It has been reported in Ticket #1539
Additionally:
* Fix a file cleanup bug in CRS Base.
* Fix a possible deadlock in the TCP ft_event function
* Add a mca_base_param_deregister() function to MCA base
* Add whole process checkpoint timers
* Add support for BTL: OpenIB, MX, Shared Memory
* Add support Mpool: rdma, sm
* Sundry bounds checking an cleanup in some scattered functions
This commit was SVN r19756.
There was an argument that was barely used, and on return at the PML
level it contained nothing usable. It has been removed, so now we're
using less memory ...
This commit was SVN r19657.
After much work by Jeff and myself, and quite a lot of discussion, it has become clear that we simply cannot resolve the infinite loops caused by RML-involved subsystems calling orte_output. The original rationale for the change to orte_output has also been reduced by shifting the output of XML-formatted vs human readable messages to an alternative approach.
I have globally replaced the orte_output/ORTE_OUTPUT calls in the code base, as well as the corresponding .h file name. I have test compiled and run this on the various environments within my reach, so hopefully this will prove minimally disruptive.
This commit was SVN r18619.
1. The send path get shorter. The BTL is allowed to return > 0 to specify that the
descriptor was pushed to the networks, and that the memory attached to it is
available again for the upper layer. The MCA_BTL_DES_SEND_ALWAYS_CALLBACK flag
can be used by the PML to force the BTL to always trigger the callback.
Unmodified BTL will continue to work as expected, as they will return OMPI_SUCCESS
which force the PML to have exactly the same behavior as before. Some BTLs have
been modified: self, sm, tcp, mx.
2. Add send immediate interface to BTL.
The idea is to have a mechanism of allowing the BTL to take advantage of
send optimizations such as the ability to deliver data "inline". Some
network APIs such as Portals allow data to be sent using a "thin" event
without packing data into a memory descriptor. This interface change
allows the BTL to use such capabilities and allows for other optimizations
in the future. All existing BTLs except for Portals and sm have this interface
set to NULL.
This commit was SVN r18551.
than using a single receive callback followed by a switch on the header.
Also fast pathed the matching for small fragments.
This commit was SVN r18549.
such, the commit message back to the master SVN repository is fairly
long.
= ORTE Job-Level Output Messages =
Add two new interfaces that should be used for all new code throughout
the ORTE and OMPI layers (we already make the search-and-replace on
the existing ORTE / OMPI layers):
* orte_output(): (and corresponding friends ORTE_OUTPUT,
orte_output_verbose, etc.) This function sends the output directly
to the HNP for processing as part of a job-specific output
channel. It supports all the same outputs as opal_output()
(syslog, file, stdout, stderr), but for stdout/stderr, the output
is sent to the HNP for processing and output. More on this below.
* orte_show_help(): This function is a drop-in-replacement for
opal_show_help(), with two differences in functionality:
1. the rendered text help message output is sent to the HNP for
display (rather than outputting directly into the process' stderr
stream)
1. the HNP detects duplicate help messages and does not display them
(so that you don't see the same error message N times, once from
each of your N MPI processes); instead, it counts "new" instances
of the help message and displays a message every ~5 seconds when
there are new ones ("I got X new copies of the help message...")
opal_show_help and opal_output still exist, but they only output in
the current process. The intent for the new orte_* functions is that
they can apply job-level intelligence to the output. As such, we
recommend that all new ORTE and OMPI code use the new orte_*
functions, not thei opal_* functions.
=== New code ===
For ORTE and OMPI programmers, here's what you need to do differently
in new code:
* Do not include opal/util/show_help.h or opal/util/output.h.
Instead, include orte/util/output.h (this one header file has
declarations for both the orte_output() series of functions and
orte_show_help()).
* Effectively s/opal_output/orte_output/gi throughout your code.
Note that orte_output_open() takes a slightly different argument
list (as a way to pass data to the filtering stream -- see below),
so you if explicitly call opal_output_open(), you'll need to
slightly adapt to the new signature of orte_output_open().
* Literally s/opal_show_help/orte_show_help/. The function signature
is identical.
=== Notes ===
* orte_output'ing to stream 0 will do similar to what
opal_output'ing did, so leaving a hard-coded "0" as the first
argument is safe.
* For systems that do not use ORTE's RML or the HNP, the effect of
orte_output_* and orte_show_help will be identical to their opal
counterparts (the additional information passed to
orte_output_open() will be lost!). Indeed, the orte_* functions
simply become trivial wrappers to their opal_* counterparts. Note
that we have not tested this; the code is simple but it is quite
possible that we mucked something up.
= Filter Framework =
Messages sent view the new orte_* functions described above and
messages output via the IOF on the HNP will now optionally be passed
through a new "filter" framework before being output to
stdout/stderr. The "filter" OPAL MCA framework is intended to allow
preprocessing to messages before they are sent to their final
destinations. The first component that was written in the filter
framework was to create an XML stream, segregating all the messages
into different XML tags, etc. This will allow 3rd party tools to read
the stdout/stderr from the HNP and be able to know exactly what each
text message is (e.g., a help message, another OMPI infrastructure
message, stdout from the user process, stderr from the user process,
etc.).
Filtering is not active by default. Filter components must be
specifically requested, such as:
{{{
$ mpirun --mca filter xml ...
}}}
There can only be one filter component active.
= New MCA Parameters =
The new functionality described above introduces two new MCA
parameters:
* '''orte_base_help_aggregate''': Defaults to 1 (true), meaning that
help messages will be aggregated, as described above. If set to 0,
all help messages will be displayed, even if they are duplicates
(i.e., the original behavior).
* '''orte_base_show_output_recursions''': An MCA parameter to help
debug one of the known issues, described below. It is likely that
this MCA parameter will disappear before v1.3 final.
= Known Issues =
* The XML filter component is not complete. The current output from
this component is preliminary and not real XML. A bit more work
needs to be done to configure.m4 search for an appropriate XML
library/link it in/use it at run time.
* There are possible recursion loops in the orte_output() and
orte_show_help() functions -- e.g., if RML send calls orte_output()
or orte_show_help(). We have some ideas how to fix these, but
figured that it was ok to commit before feature freeze with known
issues. The code currently contains sub-optimal workarounds so
that this will not be a problem, but it would be good to actually
solve the problem rather than have hackish workarounds before v1.3 final.
This commit was SVN r18434.
* Remove the opal_only option. This was suffering from bit rot, and no one uses it. It can be added back fairly easily if wanted.
* Cleanup metadata interactions at the local level.
* Touch up some of the INC funcitonality (fix typos and a minor ordering issue)
This commit was SVN r18416.
Update the rsh tree spawn capability so we spawn the next wave of daemons before launching our own local procs.
Add an ability to encode nodenames for large clusters with contiguous node name numbering schemes - this allows communication of all node names in a few bytes instead of tens-of-bytes/node.
This commit was SVN r18338.
The problem was caused by a bad ordering between the restart of the ORTE level tcp connections (in the OOB - out-of-band communication) and the Open MPI level tcp connections (BTLs). Before this commit ORTE would shutdown and restart the OOB completely before the OMPI level restarted its tcp connections. What would happen is that a socket descriptor used by the OMPI level on checkpoint was assigned to the ORTE level on restart. But the OMPI level had no knowledge that the socket descriptor it was previously using has been recycled so it closed it on restart. This caused the ORTE level to break as the newly created socket descriptor was closed without its knowledge.
The fix is to have the OMPI level shutdown tcp connections, allow the ORTE level to restart, and then allow the OMPi level to restart its connections. This seems obvious, and I'm surprised that this bug has not cropped up sooner. I'm confident that this specific problem has been fixed with this commit.
Thanks to Eric Roman and Tamer El Sayed for their help in identifying this problem, and patience while I was fixing it.
* Add a new state {{{OPAL_CRS_RESTART_PRE}}}. This state identifies when we are on the down slope of the INC (finalize-like) which is useful when you want to close, but not reopen a component set for fear of interfering with a lower level.
* Use this new state in OMPI level coordination. Here we want to make sure to play well with both the OMPI/BTL/TCP and ORTE/OOB/TCP components.
* Update ft_event functions in PML and BML to handle the new restart state.
* Add an additional flag to the error output in OOB/TCP so we can see what the socket descriptor was on failure as this can be helpful in debugging.
This commit was SVN r18276.
{{{
svn merge -r 18218:18240 https://svn.open-mpi.org/svn/ompi/tmp/jjh-scratch .
}}}
Contains:
* Primarily a fix for a user reported problem where a cached file descriptor is causing a SIGPIPE on restart.
* Cleanup some small memory leaks from using mca_base_param_env_var() - Thanks Jeff
* Cleanup ORTE FT tool compilation in non-FT builds - Thanks Tim P.
* Cleanup mpi interface with missplaced {{{OPAL_CR_ENTER_LIBRARY}}} - Thanks Terry
* Some other sundry cleanup items all dealing with C/R functionality in the trunk.
This commit was SVN r18241.
The commit has been tested for C/R and Cray operations, and on Odin (SLURM, rsh) and RoadRunner (TM). I tried to update all environments, but obviously could not test them. I know that Windows needs some work, and have highlighted what is know to be needed in the odls process component.
This represents a lot of work by Brian, Tim P, Josh, and myself, with much advice from Jeff and others. For posterity, I have appended a copy of the email describing the work that was done:
As we have repeatedly noted, the modex operation in MPI_Init is the single greatest consumer of time during startup. To-date, we have executed that operation as an ORTE stage gate that held the process until a startup message containing all required modex (and OOB contact info - see #3 below) info could be sent to it. Each process would send its data to the HNP's registry, which assembled and sent the message when all processes had reported in.
In addition, ORTE had taken responsibility for monitoring process status as it progressed through a series of "stage gates". The process reported its status at each gate, and ORTE would then send a "release" message once all procs had reported in.
The incoming changes revamp these procedures in three ways:
1. eliminating the ORTE stage gate system and cleanly delineating responsibility between the OMPI and ORTE layers for MPI init/finalize. The modex stage gate (STG1) has been replaced by a collective operation in the modex itself that performs an allgather on the required modex info. The allgather is implemented using the orte_grpcomm framework since the BTL's are not active at that point. At the moment, the grpcomm framework only has a "basic" component analogous to OMPI's "basic" coll framework - I would recommend that the MPI team create additional, more advanced components to improve performance of this step.
The other stage gates have been replaced by orte_grpcomm barrier functions. We tried to use MPI barriers instead (since the BTL's are active at that point), but - as we discussed on the telecon - these are not currently true barriers so the job would hang when we fell through while messages were still in process. Note that the grpcomm barrier doesn't actually resolve that problem, but Brian has pointed out that we are unlikely to ever see it violated. Again, you might want to spend a little time on an advanced barrier algorithm as the one in "basic" is very simplistic.
Summarizing this change: ORTE no longer tracks process state nor has direct responsibility for synchronizing jobs. This is now done via collective operations within the MPI layer, albeit using ORTE collective communication services. I -strongly- urge the MPI team to implement advanced collective algorithms to improve the performance of this critical procedure.
2. reducing the volume of data exchanged during modex. Data in the modex consisted of the process name, the name of the node where that process is located (expressed as a string), plus a string representation of all contact info. The nodename was required in order for the modex to determine if the process was local or not - in addition, some people like to have it to print pretty error messages when a connection failed.
The size of this data has been reduced in three ways:
(a) reducing the size of the process name itself. The process name consisted of two 32-bit fields for the jobid and vpid. This is far larger than any current system, or system likely to exist in the near future, can support. Accordingly, the default size of these fields has been reduced to 16-bits, which means you can have 32k procs in each of 32k jobs. Since the daemons must have a vpid, and we require one daemon/node, this also restricts the default configuration to 32k nodes.
To support any future "mega-clusters", a configuration option --enable-jumbo-apps has been added. This option increases the jobid and vpid field sizes to 32-bits. Someday, if necessary, someone can add yet another option to increase them to 64-bits, I suppose.
(b) replacing the string nodename with an integer nodeid. Since we have one daemon/node, the nodeid corresponds to the local daemon's vpid. This replaces an often lengthy string with only 2 (or at most 4) bytes, a substantial reduction.
(c) when the mca param requesting that nodenames be sent to support pretty error messages, a second mca param is now used to request FQDN - otherwise, the domain name is stripped (by default) from the message to save space. If someone wants to combine those into a single param somehow (perhaps with an argument?), they are welcome to do so - I didn't want to alter what people are already using.
While these may seem like small savings, they actually amount to a significant impact when aggregated across the entire modex operation. Since every proc must receive the modex data regardless of the collective used to send it, just reducing the size of the process name removes nearly 400MBytes of communication from a 32k proc job (admittedly, much of this comm may occur in parallel). So it does add up pretty quickly.
3. routing RML messages to reduce connections. The default messaging system remains point-to-point - i.e., each proc opens a socket to every proc it communicates with and sends its messages directly. A new option uses the orteds as routers - i.e., each proc only opens a single socket to its local orted. All messages are sent from the proc to the orted, which forwards the message to the orted on the node where the intended recipient proc is located - that orted then forwards the message to its local proc (the recipient). This greatly reduces the connection storm we have encountered during startup.
It also has the benefit of removing the sharing of every proc's OOB contact with every other proc. The orted routing tables are populated during launch since every orted gets a map of where every proc is being placed. Each proc, therefore, only needs to know the contact info for its local daemon, which is passed in via the environment when the proc is fork/exec'd by the daemon. This alone removes ~50 bytes/process of communication that was in the current STG1 startup message - so for our 32k proc job, this saves us roughly 32k*50 = 1.6MBytes sent to 32k procs = 51GBytes of messaging.
Note that you can use the new routing method by specifying -mca routed tree - if you so desire. This mode will become the default at some point in the future.
There are a few minor additional changes in the commit that I'll just note in passing:
* propagation of command line mca params to the orteds - fixes ticket #1073. See note there for details.
* requiring of "finalize" prior to "exit" for MPI procs - fixes ticket #1144. See note there for details.
* cleanup of some stale header files
This commit was SVN r16364.
on a parameter and are determined in runtime. r15346 removed calculation of
correct sizes for this structures. This patch adds it back and fixes trac:1116, #1114.
This commit was SVN r15932.
The following SVN revision numbers were found above:
r15346 --> open-mpi/ompi@433f8a7694
The following Trac tickets were found above:
Ticket 1116 --> https://svn.open-mpi.org/trac/ompi/ticket/1116
* General TCP cleanup for OPAL / ORTE
* Simplifying the OOB by moving much of the logic into the RML
* Allowing the OOB RML component to do routing of messages
* Adding a component framework for handling routing tables
* Moving the xcast functionality from the OOB base to its own framework
Includes merge from tmp/bwb-oob-rml-merge revisions:
r15506, r15507, r15508, r15510, r15511, r15512, r15513
This commit was SVN r15528.
The following SVN revisions from the original message are invalid or
inconsistent and therefore were not cross-referenced:
r15506
r15507
r15508
r15510
r15511
r15512
r15513
have to construct/destruct only once. Therefore, the construction will
happens before digging for a PML, while the destruction just before
finalizing the component.
Add some OPAL_LIKELY/OPAL_UNLIKELY.
This commit was SVN r15347.
than just the PML/BTLs these days. Also clean up the code so that it
handles the situation where not all nodes register information for a given
node (rather than just spinning until that node sends information, like
we do today).
Includes r15234 and r15265 from the /tmp/bwb-modex branch.
This commit was SVN r15310.
The following SVN revisions from the original message are invalid or
inconsistent and therefore were not cross-referenced:
r15234
r15265
relative bandwidths of each BTL. Precalculate what part of a message should
be send via each BTL in advance instead of doing it during scheduling.
This commit was SVN r15248.
