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1148 Коммитов

Автор SHA1 Сообщение Дата
Yossi Itigin
e3ee11608b coll_hcoll: register progress callback directly without a proxy
Signed-off-by: Yossi Itigin <yosefe@mellanox.com>
2018-06-24 18:06:07 +03:00
Mikhail Kurnosov
c500739293 coll/base: Add MPI_Bcast based on a scatter followed by an allgather
Implements MPI_Bcast using a binomial tree scatter followed by
an recursive doubling allgather.

Signed-off-by: Mikhail Kurnosov <mkurnosov@gmail.com>
2018-06-21 11:47:07 -06:00
Mikhail Kurnosov
66bc86a25b Change the tree_next to a flexible array member
Signed-off-by: Mikhail Kurnosov <mkurnosov@gmail.com>
2018-06-19 13:01:26 -06:00
Mikhail Kurnosov
6547b58316 coll/base: add knomial tree algorithm for MPI_Bcast
Signed-off-by: Mikhail Kurnosov <mkurnosov@gmail.com>
2018-06-19 13:01:26 -06:00
KAWASHIMA Takahiro
a38e9e064f coll: Update COLL module interface version to 2.3.0
Members for persistent operations are added to the module structure
in a prior commit.

Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
2018-06-11 17:22:16 +09:00
KAWASHIMA Takahiro
e12a5056f1 coll/libnbc: Rename internal functions
The `nbc_i*` functions don't start communication, but create a request.
`nbc_*_init` are appropriate names for them.

Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
2018-06-11 17:22:16 +09:00
KAWASHIMA Takahiro
5c21903477 coll/libnbc: Add assertion for NBC_A2A_DISS
Persistent operation for `NBC_A2A_DISS` is not supported currently.
Though the algorithm is not selected at all currently, I put an
assertion not to select it by mistake.

Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
2018-06-11 17:22:16 +09:00
KAWASHIMA Takahiro
0b8b0f8393 coll/libnbc: Implement MPI_STARTALL
Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
2018-06-11 17:22:16 +09:00
KAWASHIMA Takahiro
ed0144bad4 coll/libnbc: Adapt local copy for persistent request
`NBC_Copy` shoud not be called in `MPI_*_INIT`.
`NBC_Sched_copy` should be called instead.

Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
2018-06-11 17:22:16 +09:00
KAWASHIMA Takahiro
5c5de3a4fb coll/libnbc: Fix handling of completed request
Because a persistent reuqest does not free its `schedule` object
when the communication completes, the `NBC_Progress` function cannot
determine the completion using `schedule`.

Without this change, a hang occurs when the `NBC_Progress` function
is called recursively through the `NBC_Start_round` function.

Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
2018-06-11 17:22:16 +09:00
KAWASHIMA Takahiro
8e5690bf5c coll/libnbc: Correct persistent request handling
Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
2018-06-11 17:22:16 +09:00
KAWASHIMA Takahiro
e69e99575e coll: Enable func check in mca_coll_base_comm_select
Now libnbc COLL supports persistent collectives and all `*_init`
functions of the COLL interface are available. So let's enable the
check of availability of those functions on a communicator creation.

Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
2018-06-11 09:53:37 +09:00
Gilles Gouaillardet
a9609b6bf8 coll/libnbc: add persistent collectives implementation
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-06-11 09:53:37 +09:00
KAWASHIMA Takahiro
a9fdea51aa coll: Add persistent collective communication request feature
Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
2018-06-11 09:53:37 +09:00
Gilles Gouaillardet
c753e9baff coll/libnbc: code refactoring
prepare the upcoming persistent collectives by pre-factoring some code

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>

fixup 808c3c62cd9475edd91ecde9d2d53b12e28b2c04
2018-06-11 09:53:37 +09:00
Gilles Gouaillardet
fe0bb6c310 coll/libnbc: misc revamp - merge NBC_Init_handle() into NBC_Schedule_request() - set schedule in NBC_Schedule_request instead of NBC_Start() - update NBC_Start() prototype
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-06-11 09:53:37 +09:00
Gilles Gouaillardet
360a76f440 coll/libnbc: revamp ibcast and use NBC_Schedule_request()
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-06-11 09:53:37 +09:00
Mikhail Kurnosov
3adf96fdb8 coll/base: add butterfly algorithm for MPI_Reduce_scatter
Implements butterfly algorithm for MPI_Reduce_scatter.
The algorithm can be used both by commutative and non-commutative operations, for power-of-two and non-power-of-two number of processes.

Signed-off-by: Mikhail Kurnosov <mkurnosov@gmail.com>
2018-06-05 15:53:13 +07:00
Jeff Squyres
35438ae9b5 mpi/finalized: revamp INITIALIZED/FINALIZED
Per MPI-3.1:8.7.1 p361:11-13, it's valid for MPI_FINALIZED to be
invoked during an attribute destruction callback (e.g., during the
destruction of keyvals on MPI_COMM_SELF during the very beginning of
MPI_FINALIZE).  In such cases, MPI_FINALIZED must return "false".

Prior to this commit, we hung in FINALIZED if it were invoked during
a COMM_SELF attribute destruction callback in FINALIZE.  See
https://github.com/open-mpi/ompi/issues/5084.

This commit converts the MPI_INITIALIZED / MPI_FINALIZED
infrastructure to use a single enum (ompi_mpi_state, set atomically)
to represent the state of MPI:

- not initialized
- init started
- init completed
- finalize started
- finalize past COMM_SELF destruction
- finalize completed

The "finalize past COMM_SELF destruction" state is what allows us to
return "false" from MPI_FINALIZED before COMM_SELF has been fully
destroyed / all attribute callbacks have been invoked.

Since this state is checked at nearly every MPI API call (to see if
we're outside of the INIT/FINALIZE epoch), care was taken to use
atomics to *set* the ompi_mpi_state value in ompi_mpi_init() and
ompi_mpi_finalize(), but performance-critical code paths can simply
read the variable without needing to use a slow call to an
opal_atomic_*() function.

Thanks to @AndrewGaspar for reporting the issue.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-06-01 13:36:29 -07:00
Mikhail Kurnosov
28d5837dd9 coll: reduce_scatter_block: add butterfly algorithm
Implements butterfly algorithm for MPI_Reduce_scatter_block.
The algorithm can be used both by commutative and non-commutative
operations, for power-of-two and non-power-of-two number of processes.

Signed-off-by: Mikhail Kurnosov <mkurnosov@gmail.com>
2018-05-27 14:17:41 +07:00
George Bosilca
7191ea120c
Fix merge conflict related to function renaming.
Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
2018-05-15 11:34:20 -04:00
bosilca
d13b9a2e25
Merge pull request #5156 from ggouaillardet/topic/reduce_scatter_block
coll: reduce_scatter_block: rename and MCA parameter description fix
2018-05-15 11:13:26 -04:00
Mikhail Kurnosov
82299a9c04 coll: reduce_scatter_block: add recursive halving algorithm
Signed-off-by: Mikhail Kurnosov <mkurnosov@gmail.com>
2018-05-15 08:20:32 +07:00
Gilles Gouaillardet
ce7b3113f6 coll: reduce_scatter_block: rename and MCA parameter description fix
- rename ompi_coll_base_reduce_scatter_block_basic to
   more self descriptive ompi_coll_base_reduce_scatter_block_basic_linear
 - fix the description of the coll_tuned_reduce_scatter_block_algorithm
   MCA param

this fixes and documents previous open-mpi/ompi@0e8b35b615

MPI_Reduce_scatter_block used to be implemented by the coll/basic module only.
A new algo (recursive doubling) was recently introduced and can be used via the coll/tuned module,
but we never intended to make it the default algo.
In order to "restore" the previous default, the initial algo was moved from coll/basic to coll/base,
and is now used by default by coll/tuned.

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-05-09 08:54:48 +09:00
Jeff Squyres
b39bbfb3c0
Merge pull request #5142 from mkurnosov/base-reduce-remove-warnings
coll/base/reduce: remove warning identified by Coverity Scan
2018-05-07 15:49:56 -04:00
Gilles Gouaillardet
0e8b35b615 coll/tuned: use basic algo for reduce_scatter_block by default
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-05-07 16:11:44 +09:00
Gilles Gouaillardet
32095be0d6 coll/{base,basic}: move reduce_scatter_block from basic to base
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-05-07 16:11:38 +09:00
Mikhail Kurnosov
ba968e4490 coll/base/reduce: Remove warning identified by Coverity Scan
Signed-off-by: Mikhail Kurnosov <mkurnosov@gmail.com>
2018-05-04 20:48:37 +07:00
Mikhail Kurnosov
8cf8553abd Resolve merge conflicts
Signed-off-by: Mikhail Kurnosov <mkurnosov@gmail.com>
2018-05-03 07:28:32 +07:00
Mikhail Kurnosov
787ec8929b Rename function rounddown into ompi_rounddown
FreeBSD 11 `/sys/param.h` has declaration of `rounddown`

Signed-off-by: Mikhail Kurnosov <mkurnosov@gmail.com>
2018-04-24 07:59:49 +07:00
Mikhail Kurnosov
4cbcff7fcd coll/base: add recursive doubling algorithm for MPI_Reduce_scatter_block
Signed-off-by: Mikhail Kurnosov <mkurnosov@gmail.com>
2018-04-23 11:02:31 +07:00
Mikhail Kurnosov
82a3a5bdb5 Fix dynamic decision for Scan and bug in Allreduce
Signed-off-by: Mikhail Kurnosov <mkurnosov@gmail.com>
2018-04-06 11:03:17 +07:00
Gilles Gouaillardet
e85fa469f3 coll/tuned: add recursive doubling algo for [ex]scan
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-04-04 14:56:23 +09:00
Gilles Gouaillardet
393376bbd9 coll/basic: move [ex]scan from coll/basic to coll/base
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-04-04 13:41:01 +09:00
Gilles Gouaillardet
65fa0b59c3 coll/tuned: add Rabenseifner algo for [all]reduce
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-04-04 13:25:41 +09:00
Mikhail Kurnosov
177c6ce51f Move algorithms from coll/spacc to coll/base and remove coll/spacc
Signed-off-by: Mikhail Kurnosov <mkurnosov@gmail.com>
2018-04-04 10:21:06 +07:00
Mikhail Kurnosov
1d2d43bdf0 Fix compile error with dtype
Signed-off-by: Mikhail Kurnosov <mkurnosov@gmail.com>
2018-04-01 08:27:34 +07:00
Mikhail Kurnosov
50ec214d42 Add recursive doubling algorithm for MPI_Scan and MPI_Exscan to coll/base
Signed-off-by: Mikhail Kurnosov <mkurnosov@gmail.com>
2018-03-30 10:12:51 +07:00
Mikhail Kurnosov
bd12e2b1c6 Add recursive doubling algorithm for Scan and Exscan
Implements recursive doubling algorithm for MPI_Scan and MPI_Exscan.
The algorithm preserves order of operations so it can be used both
by commutative and non-commutative operations.

Signed-off-by: Mikhail Kurnosov <mkurnosov@gmail.com>
2018-03-28 16:27:11 +07:00
Valentin Petrov
bf4e694a96 coll/hcoll: Fix return codes
Signed-off-by: Valentin Petrov <valentinp@mellanox.com>
2018-02-22 17:48:29 +02:00
Nathan Hjelm
0e83568466 coll/libnbc: do not take lock in progress if there are no requests
This commit fixes a flaw in the progress function for libnbc. The
function was unconditionally taking a lock even if there are no
requests to process. This lock was showing up in vtune traces of
multi-threaded benchmarks.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-02-13 09:51:01 -07:00
Jeff Squyres
e7f91f8068
Merge pull request #4527 from clementFoyer/osc-no-includes
Remove inter-dependencies between OSC modules.
2018-02-09 15:49:56 -05:00
Clement Foyer
f5b4fc05f8 Remove inter-dependencies between OSC modules.
The osc monitoring component needed to include other OSC components
header in order to be able tu access communicator through the
component specific ompi_osc_*_module_t structures. This commit remove
the dependency, and resolve the issue #4523.

Extend the common monitoring API.

  * Now it's possible to translate from local rank to world rank from
    both the communicator and the group.
  * Remove useless hashtable as we directly use the w_group contained
    in window structure.

Add automatic generation at config time.

The templates are expanded at configure time. It creates a new header
file that generates all the variables/functions needed. Adding this
during the autogen automagicaly generates for each of the available
modules the proper functions.

Only keep a generated argv-style array.

Following Jeff's advice, the configure.m4 file generate a simple array
of module variables to be iterated over to find the proper module.

Signed-off-by: Clement Foyer <clement.foyer@inria.fr>
2018-02-07 11:52:00 +00:00
Ralph Castain
8e8a9aecc5 Correct abstraction break - direct reference to ORTE
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-01-30 21:19:14 -08:00
Nathan Hjelm
7893248c5a opal/asm: add fetch-and-op atomics
This commit adds support for fetch-and-op atomics. This is needed
because and and or are irreversible operations so there needs to be a
way to get the old value atomically. These are also the only semantics
supported by C11 (there is not atomic_op_fetch, just
atomic_fetch_op). The old op-and-fetch atomics have been defined in
terms of fetch-and-op.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2017-11-30 10:41:23 -07:00
Nathan Hjelm
1282e98a01 opal/asm: rename existing arithmetic atomic functions
This commit renames the arithmetic atomic operations in opal to
indicate that they return the new value not the old value. This naming
differentiates these routines from new functions that return the old
value.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2017-11-30 10:41:22 -07:00
Thomas Naughton
c5dc41ee1a configury: single quote to avoid trouble with BSD
Signed-off-by: Thomas Naughton <naughtont@ornl.gov>
2017-11-03 11:34:28 -04:00
Thomas Naughton
86d282d6dd fix PML monitoring configury to compile DSOs
Signed-off-by: Thomas Naughton <naughtont@ornl.gov>
2017-10-26 15:53:11 -04:00
Valentin Petrov
1e311b2619 coll/hcoll: dtype fallback optimization
If hcoll fails to create mpi derived type let's set zero_dte on this dtype.
    This will save cycles on subsequent collective calls with the same derived
    type since we will not try to create hcoll type again.

Signed-off-by: Valentin Petrov <valentinp@mellanox.com>
2017-10-06 10:29:29 +03:00
Valentin Petrov
06ef344630 coll/hcoll: extends dtypes support
Adds support for legacy MPI_UB/LB types (old apps may use it) as
    well as for BOOL/WCHAR.

Signed-off-by: Valentin Petrov <valentinp@mellanox.com>
2017-10-06 10:29:29 +03:00