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Граф коммитов

3532 Коммитов

Автор SHA1 Сообщение Дата
Ralph Castain
9883f42caf Add missing commit
This commit was SVN r26501.
2012-05-28 02:20:20 +00:00
Ralph Castain
e705de1ce6 Complete nidmap cleanup - we don't know our node until we have unpacked all the jobs since our job is always the last one, so wait until all jobs are unpacked before assigning locality
This commit was SVN r26500.
2012-05-27 18:37:57 +00:00
Ralph Castain
be6ed9c2df Allow partial use of allocations by specifying the max number of daemons (i.e., max VM size) for the job
This commit was SVN r26499.
2012-05-27 16:48:19 +00:00
Ralph Castain
c69a04e16b Cleanup the pidmap decoding for apps to avoid confusion
This commit was SVN r26498.
2012-05-27 16:21:38 +00:00
Ralph Castain
31beff6362 Oops - if we don't want the Java bindings, then we really shouldn't be building them :-/
Also ensure we don't try to build them if no Java support was found, and error out if the user requests the bindings and we didn't find Java support.

Add a configure flag to skip the Java tests and just force-set the Java support to "disabled"

This commit was SVN r26484.
2012-05-23 19:51:27 +00:00
Ralph Castain
7fb49b1559 Silence warning
This commit was SVN r26480.
2012-05-23 13:59:41 +00:00
Ralph Castain
da28a4b0e6 Silence warning
This commit was SVN r26479.
2012-05-23 13:59:22 +00:00
Jeff Squyres
7969faf372 Fixes trac:3057: minor update to the man page to state that slot locations
in rankfiles use ''physical'' device indexes (vs. logical indexes).

This commit was SVN r26478.

The following Trac tickets were found above:
  Ticket 3057 --> https://svn.open-mpi.org/trac/ompi/ticket/3057
2012-05-23 11:43:33 +00:00
Nathan Hjelm
b9959a95cd ack! one more
This commit was SVN r26472.
2012-05-22 20:52:52 +00:00
Nathan Hjelm
f2d4e95429 doh! add missing include
This commit was SVN r26471.
2012-05-22 20:49:13 +00:00
Nathan Hjelm
cdc3c87ba6 move pmi init/finalize into a common component
This commit was SVN r26470.
2012-05-22 15:15:39 +00:00
Nathan Hjelm
78b8b3cf76 bug fix: actually close ess components
This commit was SVN r26469.
2012-05-22 15:09:18 +00:00
Ralph Castain
b217124bd8 Symlink instead of copy
This commit was SVN r26464.
2012-05-21 23:07:48 +00:00
Ralph Castain
da3873af6f Rename the mapreduce tool to "mr+" per the marketing types
This commit was SVN r26463.
2012-05-21 21:17:44 +00:00
Nathan Hjelm
6eeca66475 add an option to enable static ports. diabled by default
This commit was SVN r26462.
2012-05-21 19:56:15 +00:00
Ralph Castain
83d69b6c95 Enable the ORTE progress thread for apps (not needed in the tools as they already continuously loop in the event lib). This appears to be working, at least for MPI apps that only use shared memory (a simple "hello"). More testing is required to identify where problems will occur - this is only intended to allow further development.
In order to use the progress thread, you must configure with:

--enable-orte-progress-threads --enable-event-thread-support

This commit was SVN r26457.
2012-05-20 15:14:43 +00:00
Ralph Castain
c4f8043064 Per Nathan, with a little cleanup by me: update the PMI support to aggregate modex info, thus reducing the number of keys required so it fits within Cray default constraints
This commit was SVN r26456.
2012-05-19 16:12:52 +00:00
Ralph Castain
a526afae92 Ensure we always cleanup local procs, no matter how we exited.
This commit was SVN r26454.
2012-05-18 23:37:40 +00:00
Ralph Castain
12ebc0e269 Don't need this to be a bin program as the class is captured in the jar
This commit was SVN r26453.
2012-05-18 23:37:18 +00:00
Ralph Castain
b16e43f489 Silence a warning on Mac
This commit was SVN r26449.
2012-05-18 15:27:04 +00:00
Ralph Castain
ca1b325738 Tweak the java setup so it works better on Mac. Only build mapreduce and allocators if hadoop support was requested.
This commit was SVN r26448.
2012-05-18 01:02:01 +00:00
Jeff Squyres
cab31eafce Revert r26413: it was causing too much confusion. When an MPI proc
exits with status 77, the whole job will be killed, but mpirun will
still return an exit status of 77, so MTT will report it as a skip
anyway. 

This commit was SVN r26445.

The following SVN revision numbers were found above:
  r26413 --> open-mpi/ompi@02aa36f2e5
2012-05-16 14:45:58 +00:00
Jeff Squyres
dab7d36a81 Fix location of the default hostfile. Thanks to Götz Waschk for
identifying the problem.

This commit was SVN r26441.
2012-05-15 16:13:39 +00:00
Jeff Squyres
2d78728d38 Fix the macro name in the comment: it's EXTRA_DIST, not EXTRA_SOURCES.
This commit was SVN r26429.
2012-05-10 14:07:36 +00:00
Jeff Squyres
b325c17c72 It's a little weird to put in a blank _SOURCES line for the
HDFSFileFinder PROGRAM, but if we don't put in a _SOURCES line at all,
Automake will default to "HDFSFileFinter_class_SOURCES =
HDFSFileFinder.c", which clearly will cause problems.  

But we don't want to put the .java file in _SOURCES, either, because
we haven't configured Automake to handle Java (because current
versions of Automake only have GCJ, not other Java compilers).  So set
HDFSFileFinder_class_SOURCES to blank and list the .java file in
EXTRA_SOURCES (so that they get picked up for "make dist").

This commit was SVN r26424.
2012-05-10 13:54:51 +00:00
Ralph Castain
b9d560263f Ensure we properly handle systems that do not have a jdk installed
This commit was SVN r26421.
2012-05-10 12:06:59 +00:00
Ralph Castain
b143633593 Fix java config
This commit was SVN r26420.
2012-05-10 01:51:02 +00:00
Ralph Castain
640f0610aa Fix the makefile to install the perl scripts properly
This commit was SVN r26416.
2012-05-09 14:06:02 +00:00
Ralph Castain
fd796cce0a Add an allocator tool for finding HDFS file locations and obtaining allocations for those nodes (supports both Hadoop 1 and 2). Split the Java support into two parts: detection of Java support and request for Java bindings.
This commit was SVN r26414.
2012-05-09 01:13:49 +00:00
Jeff Squyres
02aa36f2e5 ORTE defaults to killing the entire job when any process exits with a
nonzero status (we polled other MPI implementations since one one in
the OMPI community had a concrete opinion on what behavior to do here
-- all other MPI's seem to adhere to this behavior, too).

This commit adds an MCA parameter that allows us to tell ORTE to
''not'' kill jobs when a process exits with a status of 77, meaning
the GNU testing standard of "this test was skipped".  In all the OMPI
tests, all procs will either return 77 or not.  So if they all return
77, mpirun won't consider it an error, but will still return an exit
status of 77 (so that MTT can know that the test was cleanly skipped).

This commit was SVN r26413.
2012-05-08 21:49:05 +00:00
Ralph Castain
84d031d6c1 Add daemon object to job array after creation
This commit was SVN r26406.
2012-05-08 13:39:20 +00:00
Ralph Castain
70a106fa71 Fix binding on remote nodes - need to pass the binding bitmap!
This commit was SVN r26403.
2012-05-08 03:52:39 +00:00
Jeff Squyres
2ba10c37fe Per RFC, bring in the following changes:
* Remove paffinity, maffinity, and carto frameworks -- they've been
   wholly replaced by hwloc.
 * Move ompi_mpi_init() affinity-setting/checking code down to ORTE.
 * Update sm, smcuda, wv, and openib components to no longer use carto.
   Instead, use hwloc data.  There are still optimizations possible in
   the sm/smcuda BTLs (i.e., making multiple mpools).  Also, the old
   carto-based code found out how many NUMA nodes were ''available''
   -- not how many were used ''in this job''.  The new hwloc-using
   code computes the same value -- it was not updated to calculate how
   many NUMA nodes are used ''by this job.''
   * Note that I cannot compile the smcuda and wv BTLs -- I ''think''
     they're right, but they need to be verified by their owners.
 * The openib component now does a bunch of stuff to figure out where
   "near" OpenFabrics devices are.  '''THIS IS A CHANGE IN DEFAULT
   BEHAVIOR!!''' and still needs to be verified by OpenFabrics vendors
   (I do not have a NUMA machine with an OpenFabrics device that is a
   non-uniform distance from multiple different NUMA nodes).
 * Completely rewrite the OMPI_Affinity_str() routine from the
   "affinity" mpiext extension.  This extension now understands
   hyperthreads; the output format of it has changed a bit to reflect
   this new information.
 * Bunches of minor changes around the code base to update names/types
   from maffinity/paffinity-based names to hwloc-based names.
 * Add some helper functions into the hwloc base, mainly having to do
   with the fact that we have the hwloc data reporting ''all''
   topology information, but sometimes you really only want the
   (online | available) data.

This commit was SVN r26391.
2012-05-07 14:52:54 +00:00
Ralph Castain
44b8608f0a Convert debug to verbose
This commit was SVN r26384.
2012-05-05 17:46:10 +00:00
Ralph Castain
96bfeb591c Ensure flag is passed to remote daemons
This commit was SVN r26383.
2012-05-03 22:31:25 +00:00
Ralph Castain
45fee2b491 Resolve the case where only the HNP is in the system (i.e., single-node operation)
This commit was SVN r26382.
2012-05-03 18:00:01 +00:00
Ralph Castain
c352ca36c2 Minor cleanup
This commit was SVN r26381.
2012-05-02 21:23:37 +00:00
Ralph Castain
b2f77bf08f Extend the iof by adding two new components to support map-reduce IO chaining. Add a mapreduce tool for running such applications.
Fix the state machine to support multiple jobs being simultaneously launched as this is not only required for mapreduce, but can happen under comm-spawn applications as well.

This commit was SVN r26380.
2012-05-02 21:00:22 +00:00
Ralph Castain
40c2fc5f55 Update the tests, add a couple
This commit was SVN r26379.
2012-05-02 19:00:05 +00:00
Ralph Castain
c5da4f24d7 Fix stupid singletons - get the pidmap message correct
This commit was SVN r26378.
2012-05-02 17:48:02 +00:00
Ralph Castain
8f7bf3344a Update test
This commit was SVN r26370.
2012-05-01 18:38:44 +00:00
Ralph Castain
4542070cf2 Add event priority inversion test
This commit was SVN r26369.
2012-05-01 16:42:22 +00:00
Ralph Castain
a8db2fc95f Add procs to each node's map on the daemons
This commit was SVN r26368.
2012-05-01 16:41:35 +00:00
Ralph Castain
a927318ea1 Add -N option as synonym for "npernode"
This commit was SVN r26367.
2012-05-01 16:18:14 +00:00
Ralph Castain
9f724db182 Remove duplicate event assignment
This commit was SVN r26360.
2012-04-30 16:06:20 +00:00
Ralph Castain
289f9f41ec From long-term discussions, have the daemons use the node_t and proc_t structs and arrays instead of the pidmap and nidmap arrays. Sets the stage for future work.
This commit was SVN r26359.
2012-04-29 00:10:01 +00:00
Ralph Castain
47a5e30095 Ensure debug output levels if we are debugging
This commit was SVN r26358.
2012-04-29 00:03:28 +00:00
Ralph Castain
f3e3704c9e Per request from Brian, enable mapping of stddiag output (output from opal_output calls) to stderr of the local process. This allows you to obtain that output in a local window (for example, when using xterm for each process) instead of having it automatically forwarded to mpirun. Turn this on automatically whenever someone uses the -xterm option, and to be set manually using the orte_map_stddiag_to_stderr mca param.
This commit was SVN r26352.
2012-04-27 14:39:34 +00:00
Jeff Squyres
46f47e08b6 Remove typo/extra brackets and parens.
This commit was SVN r26351.
2012-04-27 13:48:43 +00:00
Jeff Squyres
9d0df5a9a6 Update configury in the new oob ud component: actually check to see if
it succeeds and run $1 or $2, accordingly.  This allows "make dist" to
run properly on machines that do not have OpenFabrics stuff installed
(e.g., the nightly tarball build machine).

There's still more to be done here -- it doesn't check for non-uniform
directories where the OpenFabrics headers/libraries might be
installed.  We might need to re-tool/combine
ompi/config/ompi_check_openib.m4 (which checks for way more than
oob/ud needs) and move it up to config/ompi_check_ofa.m4, or
something...?

This commit was SVN r26350.
2012-04-27 11:32:56 +00:00