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Ralph Castain
243076dd8c Update gadget platform file 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-04-19 21:45:13 -06:00
Gilles Gouaillardet
ded63c5e0c ompi: use ompi_coll_base_sendrecv_actual() whenever possible 
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2017-04-20 10:01:28 +09:00
Gilles Gouaillardet
52551d96c1 Merge pull request #3285 from ggouaillardet/topic/coll_zerobyte_messages 
coll/base: always send/recv zero-byte messages
 2017-04-20 09:22:47 +09:00
Gilles Gouaillardet
b18745589f Merge pull request #1665 from ggouaillardet/topic/OMPI_DATATYPE_INIT_UNAVAILABLE_BASIC_TYPE 
ompi/datatype: define OMPI_DATATYPE_INIT_UNAVAILABLE_BASIC_TYPE macro
 2017-04-20 09:10:07 +09:00
Nathaniel Graham
34b4aeb17f Merge pull request #3339 from nrgraham23/mpirun_help_improvements 
Additional mpirun --help changes
 2017-04-19 14:05:07 -06:00
Nathaniel Graham
01312b2f90 Additional mpirun --help changes 
This commit recategorizes several mpirun arguments,
and moves the information for mpirun --help arguments
to the bottom of the general help message.  I also
added the OPAL_CMD_LINE_OTYPE field to two commands
that were missed initially because they were not
in the same area as the others.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2017-04-19 11:43:45 -06:00
Gilles Gouaillardet
cc8a655fe6 configury: remove now obsolete reference to OPAL_PTRDIFF_TYPE 
since Open MPI now requires a C99, and ptrdiff_t type is part of C99,
there is no more need for the abstract OPAL_PTRDIFF_TYPE type.

Thanks George, Nathan and Paul for the help.

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2017-04-19 13:42:45 +09:00
Gilles Gouaillardet
fa5cd0dbe5 use ptrdiff_t instead of OPAL_PTRDIFF_TYPE 
since Open MPI now requires a C99, and ptrdiff_t type is part of C99,
there is no more need for the abstract OPAL_PTRDIFF_TYPE type.

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2017-04-19 13:41:56 +09:00
Gilles Gouaillardet
dcf9cca21f ompi/datatype: add the OMPI_DATATYPE_INIT_UNAVAILABLE_BASIC_TYPE macro 
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2017-04-19 13:09:33 +09:00
bosilca
872cf44c28 Improve the opal_pointer_array & more (#3369) 
* Complete rewrite of opal_pointer_array
Instead of a cache oblivious linear search use a bits array
to speed up the management of the free space. As a result we
slightly increase the memory used by the structure, but we get a
significant boost in performance.

Signed-off-by: George Bosilca <bosilca@icl.utk.edu>

* Do not register datatypes in the f2c translation table.
The registration is now done up into the Fortran layer, by
forcing a call to MPI_Type_c2f.

Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
 2017-04-18 21:41:26 -04:00
Gilles Gouaillardet
23dad50d51 mpi/c: allow MPI_PROC_NULL in MPI_Win_shared_query() 
This fixes a regression introduced in open-mpi/ompi@b3a20100d3

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2017-04-19 10:06:41 +09:00
Howard Pritchard
3918b7a796 Merge pull request #3213 from hppritcha/topic/remove_loadleveer 
orte/ras: remove loadleveler support
 2017-04-18 09:18:54 -06:00
Yossi
9ebcafd6d6 Merge pull request #3260 from derbeyn/fix_yalla 
Fix yalla PML: MPI_Recv does not return MPI_ERR_TRUNCATE upon overflow
 2017-04-18 11:37:48 +03:00
Jeff Squyres
518cdd1603 Merge pull request #3361 from jsquyres/pr/fix-static-builds 
dl/dlopen: add libs to wrapper LIBS
 2017-04-16 06:57:08 -04:00
Jeff Squyres
a0543616ee dl/dlopen: add libs to wrapper LIBS 
With this, libs (e.g., "-ldl") are not added to the wrapper LIBS
flags.  This may work on some platforms, but on at least RHEL 7.3, it
does not (i.e., compiling MPI applications fails because it can't find
dlopen).

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2017-04-15 09:30:18 -07:00
Ralph Castain
3f5a1dc56d Merge pull request #3356 from rhc54/topic/bind 
Use the node index to compare to daemon vpid when identifying procs to bind
 2017-04-14 06:12:04 -07:00
Ralph Castain
bb1aaa3286 Use the node index to compare to daemon vpid when identifying procs to bind 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-04-14 02:37:25 -07:00
Ralph Castain
31ad45312f Merge pull request #3350 from rhc54/topic/josh 
On behalf of Josh, ensure we flag that the child is no longer alive since we are killing it with SIGKILL
 2017-04-14 02:16:47 -07:00
Ralph Castain
67156556ce On behalf of Josh, ensure we flag that the child is no longer alive since we are killing it with SIGKILL 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-04-13 21:07:26 -07:00
Ralph Castain
3202de8787 Merge pull request #3349 from rhc54/topic/reg 
Fix event registration - need to increment the event index and record the number of codes in the event handler
 2017-04-13 18:24:32 -07:00
Ralph Castain
ffbfd22d84 Fix event registration - need to increment the event index and record the number of codes in the event handler 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-04-13 17:35:10 -07:00
Ralph Castain
fbf714d326 Merge pull request #3331 from artpol84/orte_cleanup/master 
orte/pmix: Do not set orted exit status to one from proc abort
 2017-04-13 15:14:14 -07:00
Ralph Castain
004d655e38 Merge pull request #3344 from rhc54/topic/cov 
Minor coverity cleanups
 2017-04-13 12:54:08 -07:00
Howard Pritchard
4b9840e886 Merge pull request #3332 from hppritcha/topic/contributing 
CONTRIBUTING: add a CONTRIBUTING.md file
 2017-04-13 11:54:49 -06:00
Howard Pritchard
6b1dbaa65e CONTRIBUTING: add a CONTRIBUTING.md file 
[skip ci]

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2017-04-13 10:53:43 -06:00
Alina Sklarevich
d93b67257b PML UCX: handle a synchronous send. 
MCA_PML_BASE_SEND_SYNCHRONOUS

Signed-off-by: Alina Sklarevich <alinas@mellanox.com>
 2017-04-13 18:11:55 +03:00
Jeff Squyres
38d712ab96 Merge pull request #3328 from jsquyres/pr/guidelines 
Create a Github issue template
 2017-04-13 10:55:38 -04:00
Yossi
3081d7e626 Merge pull request #3346 from alinask/topic/ucx_yalla_fix_msg_release 
PML/UCX/YALLA: Fix the message release call.
 2017-04-13 16:35:06 +03:00
Alina Sklarevich
eec310c99c PML/UCX/YALLA: Fix the message release call. 
Set message to MPI_MESSAGE_NULL.

Signed-off-by: Alina Sklarevich <alinas@mellanox.com>
 2017-04-13 14:41:13 +03:00
Ralph Castain
1585854335 Minor coverity cleanups 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-04-12 19:31:35 -07:00
Gilles Gouaillardet
6886c1229a Merge pull request #3327 from jeffhammond/fix-issue-3326 
check for negative ranks in ompi_win_peer_invalid
 2017-04-13 10:53:32 +09:00
Ralph Castain
f1403ac3c2 Merge pull request #3336 from rhc54/topic/launchmon 
Update the debugger launch code to reflect the new backend mapping method.
 2017-04-12 15:10:23 -07:00
Ralph Castain
5df9567a23 Merge pull request #3335 from rhc54/topic/backward 
Update to latest PMIx master, including disabling the pmi-1 and pmi-2…
 2017-04-12 13:48:19 -07:00
Ralph Castain
0500cc1c66 Update the debugger launch code to reflect the new backend mapping method. 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-04-12 13:31:18 -07:00
Jeff Squyres
fa10e1ea97 Create a Github issue template 
So that we can stop asking common questions like "What version of Open
MPI are you using?", etc.

[skip ci]
bot:notest

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2017-04-12 16:18:32 -04:00
Ralph Castain
9f73974fe1 Update to latest PMIx master, including disabling the pmi-1 and pmi-2 backward compatibility as these interfere with the s1,s2 components 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-04-12 12:34:27 -07:00
Artem Polyakov
4af7a0827f orte/pmix: Do not set orted exit status to one from proc abort 
The fact that application proc called Abort (read failed) doesn't
mean that ORTE subsystem has failed - vice versa it does it's work
to gracefuly exit the whole application.

orted exiting with non-zero status creates a problem for at least
plm/slurm environments where orteds are launched via `srun` with
"--kill-on-bad-exit" flag. If one of orteds has exited with non-
zero status slurm will immediately kill all other orteds. As the
result we see a lot of leftover in the `/tmp` directory.

Signed-off-by: Artem Polyakov <artpol84@gmail.com>
 2017-04-13 01:37:36 +07:00
Ralph Castain
539f71d0cc Merge pull request #3310 from marksantcroos/fix/alps_wdir 
Bring ALPS ODLS up to par regarding wdir.
 2017-04-11 17:30:04 -07:00
Ralph Castain
dadc924cde Cleanup warnings when timing is not enabled 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-04-11 17:29:27 -07:00
Mark Santcroos
27fa8aabd6 Hardcode basename to "orted" for error reporting. 
Signed-off-by: Mark Santcroos <mark.santcroos@rutgers.edu>
 2017-04-11 18:59:23 -04:00
Mark Santcroos
af3a6e1a29 Verify that the chdir(2) succeeds. 
Signed-off-by: Mark Santcroos <mark.santcroos@rutgers.edu>
 2017-04-12 00:37:37 +02:00
Jeff Hammond
b3a20100d3 check for negative ranks in ompi_win_peer_invalid 
resolves #3326 (https://github.com/open-mpi/ompi/issues/3326)

Signed-off-by: jeff.r.hammond@intel.com
 2017-04-11 14:26:16 -07:00
Ralph Castain
97e38e6d84 Move a free to a little later in case the verbose output needs it 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-04-11 11:21:12 -07:00
Ralph Castain
bb81f3b5db Always setup the attach fifo, even when we initially launch under a debugger so that the user can detach and reattach later 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-04-11 08:24:03 -07:00
Nathan Hjelm
bea7d9e4f7 Merge pull request #3320 from hjelmn/osc_pt2pt_fix 
osc/pt2pt: fix infinite frag allocation loop
 2017-04-11 09:09:30 -06:00
Artem Polyakov
4477b87e1d Merge pull request #3303 from karasevb/timing2/master 
OMPI timings
 2017-04-11 07:52:40 -07:00
Boris Karasev
d132eab4a5 ompi/timings: fixed the error of opal timings env import 
Signed-off-by: Boris Karasev <karasev.b@gmail.com>
 2017-04-11 12:08:48 +06:00
Nathan Hjelm
12b52b2b2c osc/pt2pt: fix infinite frag allocation loop 
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2017-04-10 16:30:47 -06:00
Nathan Hjelm
4146ef9725 Merge pull request #3272 from hjelmn/cma_fix 
cma: restore --with-cma=no configure option
 2017-04-10 12:17:01 -06:00
Mark Santcroos
36ac54b5d8 Bring ALPS ODLS up to par regarding wdir. 
Signed-off-by: Mark Santcroos <mark.santcroos@rutgers.edu>
 2017-04-10 08:15:07 -04:00