ports/openmpi
ports/openmpi
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976144dca7
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7914 Коммитов

Автор SHA1 Сообщение Дата
yosefe
976144dca7 keep mxm context alive as long as pml_yalla component is open. 
pml_yalla_del_comm may be called after yalla module is finalized, which
leads to invalid memory access if mxm context is already destroyed in
this point.
 2015-03-10 11:52:44 +02:00
Gilles Gouaillardet
d6ae0a5e05 sharedfp/sm: fix misc memory leaks 
as reported by Coverity with CIDs 1196785, 1196787 and 1269896
 2015-03-05 16:33:32 +09:00
Gilles Gouaillardet
5b2122381b ompio: fix misc memory leaks 
as reported by Coverity with CIDs 72127, 72145, 72146, 72177, 72179,
72186, 731276, 731278, 1269888, 1269890
 2015-03-05 16:22:19 +09:00
Gilles Gouaillardet
ceeb0844b6 dpm: fix misc memory leaks 
as reported by Coverity with CIDs 1196737 and 1269850
 2015-03-05 14:20:09 +09:00
Gilles Gouaillardet
e75b1e6435 fs/base: fix misc memory leak 
as reported by Coverity with CID 72202
 2015-03-05 14:20:08 +09:00
Gilles Gouaillardet
9f13425980 fbtl/posix: fix misc memory leaks 
as reported by Coverity with CIDs 72125, 72126, 1269899 and 1269900
 2015-03-05 14:20:08 +09:00
Gilles Gouaillardet
838cd51644 pubsub: fix misc memory leak 
as reported by Coverity with CID 710627
 2015-03-05 14:20:08 +09:00
Gilles Gouaillardet
d0dded1e05 topo/base: fix misc memory leaks 
as reported by Coverity with CIDs 1269901 ans 1269902
 2015-03-05 14:20:08 +09:00
Gilles Gouaillardet
d1b2f043ff fix misc memory leaks 
as already reported by Coverity with CIDs
71818, 71819, 72250, 715767, 1196749 and 1274002
 2015-03-05 13:58:05 +09:00
Howard Pritchard
53fd425a6a romio: patches from Rob Latham for issue #255 
Patches supplied by Rob Latham which fix issue #255.

See
http://git.mpich.org/mpich.git/commit/4e80e1d2b9
http://git.mpich.org/mpich.git/commit/5a10283bf7fd

Signed-off-by: Howard Pritchard <hppritcha@gmail.com>
 2015-03-02 15:33:49 -08:00
Yohann Burette
375611505b mtl/ofi: Fix synchronous Recv from ANY_SRC. 2015-03-02 08:57:46 -08:00
Alex Mikheev
168c83ed95 OMPI/MXM: add out of band barrier at the end of del_procs 
mxm shutdown requires out of band barrier
 2015-03-02 12:56:02 +02:00
Gilles Gouaillardet
464dbccb7b ompi/bcol: fix misc memory leaks 
as reported by Coverity with CIDs 715758-715762,715765 and 715767
 2015-03-02 12:48:02 +09:00
Howard Pritchard
2b5c52fb05 romio: add comment per Rob Latham's request 2015-02-28 11:05:03 -07:00
Jeff Squyres
4a998e3d2c MPI_Comm_split_type.3in: remove erroneous "color" discussion 
Remove some outdated discussion of "color" -- looks like this was a
copy-n-paste from the MPI_Comm_split man page.  Also make some minor
updates to some Open MPI-specific key text.

Thanks to @eschnett for raising the issue.

Fixes #437.
 2015-02-28 09:33:17 -08:00
Jeff Squyres
336626dafe spelling: trivial spelling fix 
s/interupted/interrupted/gi
 2015-02-27 18:30:43 -08:00
Jeff Squyres
8d04215741 coll: trivial spelling fix 
s/Algoritm/Algorithm/g
 2015-02-27 18:20:17 -08:00
Jeff Squyres
4f1139590f datatypes: trivial spelling fix 
s/commited/committed/gi
 2015-02-27 18:16:01 -08:00
Rolf vandeVaart
30e9dd5066 Look in extra rdma array to find bml. This is needed with recent BML changes. Only affects CUDA-aware code. 2015-02-27 09:02:21 -05:00
Gilles Gouaillardet
71ac1331f1 coll/tuned: remove unused variables 2015-02-27 17:26:48 +09:00
Gilles Gouaillardet
b179a17018 coll/base: add function prototypes 2015-02-27 17:26:36 +09:00
Gilles Gouaillardet
ce2020d255 coll/base: fix error reporting 
and silence CID 1271639
 2015-02-27 17:04:26 +09:00
George Bosilca
ced44e12da Update copyright. 2015-02-26 15:54:58 -05:00
George Bosilca
47e6e15e02 Typo in a rebase. 2015-02-26 15:54:19 -05:00
George Bosilca
d126c2e6f8 Fix few COVERITY reported issues. 2015-02-26 15:53:42 -05:00
George Bosilca
44d590b8fd Fix a small problem with the handling of requests in MPI_Alltoall. 2015-02-26 15:52:44 -05:00
George Bosilca
3f757bc8cb Add a constructor for mca_coll_base_comm_t. 2015-02-26 15:52:36 -05:00
George Bosilca
d6e69ecab3 Do not preallocate any requests. They are instead automatically 
preallocated on the first collective that needs them.
Remove the ompi_coll_tuned_preallocate_memory_comm_size_limit MCA
parameter.
 2015-02-26 15:52:27 -05:00
George Bosilca
0445670bb9 Fix the automatic handling of communicator associated requests. 
If the array doesn't exist, or if it's size is not adequate then
we reallocate it. Otherwise just keep using the same array of requests.
 2015-02-26 15:52:18 -05:00
George Bosilca
67d01bd8cd Redirect most of the basic module functions to base. 2015-02-26 15:52:00 -05:00
George Bosilca
211f05fb09 Complete the dismantle of the tuned module. 2015-02-26 15:50:55 -05:00
George Bosilca
aa019e239e Rename the base header file containing the prototypes of the collective 
functions.
 2015-02-26 15:50:29 -05:00
George Bosilca
8fbcdf685d Split the tuned framework in two. Move all the functions down in the 
base, so that they can now be used by all modules. Keep the decision
functions in tuned.
 2015-02-26 15:46:13 -05:00
George Bosilca
004f65a865 Fix issue with the error reporting as suggested by Gilles. 2015-02-26 13:01:13 -05:00
Todd Kordenbrock
0cf45df1a0 osc-portals4: fix incomplete free list conversion 2015-02-26 10:53:45 -06:00
Todd Kordenbrock
b2696edeef mtl-portals4: fix incomplete free list conversion 2015-02-26 10:53:45 -06:00
Todd Kordenbrock
c73e4fd98b coll-portals4: fix incomplete free list conversion 2015-02-26 10:53:45 -06:00
Howard Pritchard
918540dd06 Merge pull request #430 from ggouaillardet/issue/404 
romio: always set err_ status in MPIO_DATATYPE_ISCOMMITTED
 2015-02-26 09:02:34 -07:00
Gilles Gouaillardet
05140df1e6 coll/tuned: regression fix 
fix the regression introduced in open-mpi/ompi@004160f8da
 2015-02-26 13:58:06 +09:00
Gilles Gouaillardet
74a46863ca romio: always set err_ status in MPIO_DATATYPE_ISCOMMITTED 
from the ROMIO sources :
/* Any MPI implementation that wishes to follow the thread-safety and
   error reporting features provided by MPICH must implement these
   four functions.  Defining these as empty should not change the behavior
   of correct programs */
the MPIO_DATATYPE_ISCOMMITTED macro now always set err_=0
this is an optimistic approach for Open MPI, but it is likely other upper
layers already checked the datatype was committed.
not setting err_ is incorrect since it can lead to some use of uninitialized
variable.

Fixes open-mpi/ompi#404
 2015-02-26 13:39:05 +09:00
Jeff Squyres
8d38ac3cee java MPI bindings: use strdup() 2015-02-25 14:21:42 -08:00
Howard Pritchard
309dfd6d3d Merge pull request #427 from roblatham00/romio-extended-greq-fix 
fix build error if greq extensions not available
 2015-02-25 10:49:00 -07:00
Mike Dubman
a0afb7d96e Merge pull request #424 from miked-mellanox/topic/master_fix_yalla 
fixes issue #414
 2015-02-25 19:01:47 +02:00
Rob Latham
24a6f14257 fix build error if greq extensions not available 
Fall back to immediately completing the non-blocking request if we are
unable to use the extended generalized request routines.
 2015-02-25 10:52:22 -06:00
Jeff Squyres
c3381150de ob1: fix another PERUSE compile error 2015-02-25 05:53:12 -08:00
yosefe
0332ab4d8b Initialize pml_yalla bsend request status. 2015-02-25 15:33:26 +02:00
Nysal Jan K.A
ded408f485 Fix a crash while closing libnbc 
If the free list initialization fails in libnbc_open()
mca_coll_libnbc_component.active_requests remain uninitialized,
resulting in a crash while closing the component
 2015-02-25 17:26:28 +05:30
Nathan Hjelm
0ac2f08460 pml/ob1: fix peruse compile error 
Fixes #416
 2015-02-24 15:39:46 -07:00
Jeff Squyres
a85a392896 Merge pull request #422 from jsquyres/topic/coverity-fixes 
Some Coverity fixes
 2015-02-24 17:00:10 -05:00
Jeff Squyres
bd99b741d2 java: update to new mpool API 2015-02-24 13:31:23 -08:00