ports/openmpi
ports/openmpi
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67 Коммитов

Автор SHA1 Сообщение Дата
Nathaniel Graham
11e1f09c25 White space fixes 
Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-21 16:39:59 -06:00
Nathaniel Graham
7548e342dd Java bindings for alltoallw functions. 
Includes bindings for MPI_ALLTOALLW and MPI_IALLTOALLW.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-21 16:29:22 -06:00
Nathaniel Graham
7f6d141bd6 More one sided java bindings. 
Bindings for the MPI_WIN_FLUSH_LOCAL, MPI_WIN_FLUSH_LOCAL_ALL, MPI_WIN_ALLOCATE, MPI_WIN_ALLOCATE_SHARED, and MPI_COMM_SPLIT_TYPE.  Also added several necessary constants.

Signed-off-by: Nathaniel Graham ngraham@lanl.gov
 2015-07-10 11:40:18 -06:00
Nathaniel Graham
26c528a627 Copyright additions 
Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-07 16:14:21 -06:00
Howard Pritchard
68c69d07ff add copyrights to changed java related files 
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2015-07-07 16:10:58 -06:00
Nathaniel Graham
982a232955 Additional Java Bindings 
Java bindings for the following functions: MPI_RACCUMULATE, MPI_GET_ACCUMULATE, MPI_RGET_ACCUMULATE, MPI_WIN_LOCK_ALL, MPI_WIN_UNLOCK_ALL, MPI_WIN_SYNC, MPI_WIN_FLUSH, MPI_WIN_FLUSH_ALL, MPI_COMPARE_AND_SWAP, and MPI_FETCH_AND_OP.  Also includes Java bindings for the Operations MPI_REPLACE and MPI_NO_OP.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-07 16:04:17 -06:00
Nathaniel Graham
bb5699e912 ompi/java: add MPI_Rget and MPI_Rput java bindings 
Wrote tests for ompi tests, but will commit later.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-06-30 12:05:59 -06:00
Gilles Gouaillardet
e0dd9bd2e7 Fix java bindings disaster 
that commit fixes :
- open-mpi/ompi@224f97b009
- open-mpi/ompi@ade7de549c
- open-mpi/ompi@0836344673
- open-mpi/ompi@7e0581c853
- open-mpi/ompi@d948a43993
 2015-06-29 09:51:36 +09:00
Gilles Gouaillardet
7e0581c853 MPI_Win_{get,set}_info : add Java bindings 2015-06-26 15:10:15 +09:00
Gilles Gouaillardet
0836344673 MPI_Win_{attach,detach} : add Java bindings 2015-06-26 15:10:14 +09:00
Gilles Gouaillardet
ade7de549c MPI_Win_create_dynamic : add Java bindings 2015-06-26 15:10:14 +09:00
Nathan Hjelm
4d92c9989e more c99 updates 
This commit does two things. It removes checks for C99 required
headers (stdlib.h, string.h, signal.h, etc). Additionally it removes
definitions for required C99 types (intptr_t, int64_t, int32_t, etc).

Signed-off-by: Nathan Hjelm <hjelmn@me.com>
 2015-06-25 10:14:13 -06:00
Ralph Castain
869041f770 Purge whitespace from the repo 2015-06-23 20:59:57 -07:00
Howard Pritchard
224f97b009 mpi/java: suppress common symbols warning 
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2015-06-15 17:13:40 -06:00
Ralph Castain
cfd2cc49fd Get the Java bindings to compile again - add missing header 2015-05-23 11:22:24 -07:00
Nathan Hjelm
68614a211b Merge pull request #596 from hjelmn/errorcode_fixes 
Handle ompi error codes in java code and remove non-standard MPI error code from mpi.h.
 2015-05-23 07:29:44 -06:00
Nathan Hjelm
163a1b4505 Remove non-standard MPI_ERR_SYSRESOURCE error code 
Replaced internal usage with OMPI_ERR_OUT_OF_RESOURCE.

Signed-off-by: Nathan Hjelm <hjelmn@me.com>
 2015-05-22 19:59:37 -06:00
Nathan Hjelm
9da29c3621 java: remove debug code 
Talked to @ggouaillardet about this code. It was not intended to be committed to
master. Removing to fix coverity issue.

CID 1270134 Unchecked return value

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2015-05-22 08:36:14 -06:00
Nathan Hjelm
403b3b20d7 Handle ompi error codes in java code 
This commit also adds protection against negative error codes in ompi
error code functions. There is one outstanding issue. There is a
negative MPI error code defined in mpi.h. This will need to be fixed
separetely.

This commit fixes coverity IDs 1271533 and 1270156.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2015-05-21 10:39:09 -06:00
Nathan Hjelm
757c021951 Fix coverity ID 1270164 
The sargs array and its elements were malloced but not freed. Note
that strings passed to NewStringUTF are copied into Java's heap and it
is the callers responsibility to free the original string.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2015-05-21 10:15:10 -06:00
Howard Pritchard
18039b34b4 ompi/java: better error message if dlopen fails 
The error message emitted by ompi/java when dlopen
fails is misleading and not very informative.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2015-04-06 13:35:09 -06:00
Jeff Squyres
8d38ac3cee java MPI bindings: use strdup() 2015-02-25 14:21:42 -08:00
Jeff Squyres
bd99b741d2 java: update to new mpool API 2015-02-24 13:31:23 -08:00
Nathan Hjelm
ed78553512 Update opal_free_list_t usage to reflect new class interface. 
Please verify your components have been updated correctly. Keep in
mind that in terms of threading:

OPAL_FREE_LIST_GET -> opal_free_list_get_st
OPAL_FREE_LIST_RETURN -> opal_free_list_return_st

I used the opal_using_threads() variant anytime it appeared multiple
threads could be operating on the free list. If this is not the case
update to _st. If multiple threads are always in use change to _mt.
 2015-02-24 10:05:44 -07:00
Gilles Gouaillardet
02da8bfa93 ompi/java: fix misc bugs 
as reported by Coverity with CIDs 1270187, 1270189 and 1270190
 2015-02-16 15:19:53 +09:00
Gilles Gouaillardet
a16c1e4418 mpiJava: call mca_base_var_register *after* MPI_Init 
Thanks to Takahiro Kawashima and Siegmar Gross for pointing this issue
 2014-10-27 14:41:54 +09:00
Oscar Vega-Gisbert
296bc56241 Java: apply a patch which solves the ticket #4313 
This commit was SVN r31470.
 2014-04-21 21:44:25 +00:00
Oscar Vega-Gisbert
f1133e2520 Java: initialize free list to only 2 buffers 
This commit was SVN r31454.
 2014-04-19 12:03:52 +00:00
Oscar Vega-Gisbert
19803d6605 Java - neighborhood collective communication: get buffers according topology information 
This commit was SVN r31452.
 2014-04-19 11:12:38 +00:00
Oscar Vega-Gisbert
5a21790caa Java: improve access to Java arrays. 
This commit was SVN r31391.
 2014-04-14 21:29:13 +00:00
Oscar Vega-Gisbert
f133b6b693 Java: move buffer methods from Comm.c to MPI.c 
This commit was SVN r31303.
 2014-04-01 21:34:51 +00:00
Oscar Vega-Gisbert
3be348e34a Java: create an MCA parameter: ompi_mpi_java_eager 
This commit was SVN r31301.
 2014-04-01 20:57:12 +00:00
Oscar Vega-Gisbert
3ef08328e7 Java - Info, Datatype: it is recommended to use dup() instead of clone() 
This commit was SVN r31300.
 2014-03-31 21:30:23 +00:00
Oscar Vega-Gisbert
aa3e2f7afd New Java method in Comm: iDup 
This commit was SVN r31299.
 2014-03-31 21:15:26 +00:00
Oscar Vega-Gisbert
c9e6f09af1 Java: neighborhood collective communications 
This commit was SVN r31296.
 2014-03-30 19:55:56 +00:00
Oscar Vega-Gisbert
a1004bf5cd Java: remove useless native datatype initialization 
This commit was SVN r31293.
 2014-03-29 19:08:39 +00:00
Oscar Vega-Gisbert
0e177597c3 Java: Comm.set/getInfo 
This commit was SVN r31289.
 2014-03-29 18:57:51 +00:00
Oscar Vega-Gisbert
845818de59 Avoid use Status member in Request. 
This commit was SVN r31287.
 2014-03-29 18:13:38 +00:00
Oscar Vega-Gisbert
cc511d0efc Avoid use Status member in Comm, Message and File. 
This commit was SVN r31198.
 2014-03-24 22:28:30 +00:00
Oscar Vega-Gisbert
4d7be5b4a4 Java: send MPI_Op handle as parameter to C side 
This commit was SVN r30965.
 2014-03-08 20:29:50 +00:00
Oscar Vega-Gisbert
3a31869a58 Authorship of Java bindings 
This commit was SVN r30901.
 2014-03-01 20:18:05 +00:00
Oscar Vega-Gisbert
4def6c5ae2 Java: avoid setting Status attributes in the C side. 
Make File implementation consistent with the rest of the API.

This commit was SVN r30900.
 2014-03-01 19:54:36 +00:00
Oscar Vega-Gisbert
90625573ff mpi.Request: avoid calling JNI free if it is null 
This commit was SVN r30806.
 2014-02-24 22:28:59 +00:00
Oscar Vega-Gisbert
ad8f57396a Avoid creating status objects in the C side. 
It is necessary because calling java methods from C is very slow.

This commit was SVN r30799.
 2014-02-23 20:08:53 +00:00
Oscar Vega-Gisbert
1dd20f397d Send JNI arguments of type request array as long array. 
This commit was SVN r30786.
 2014-02-21 09:23:07 +00:00
Oscar Vega-Gisbert
04172e47c3 mpi.Prequest: improve start and startAll 
This commit was SVN r30769.
 2014-02-18 22:33:15 +00:00
Oscar Vega-Gisbert
98530055d1 mpi.Message: java object members as parameters 
This commit was SVN r30755.
 2014-02-17 22:26:30 +00:00
Oscar Vega-Gisbert
86e40c568a Improve access to buffers. 
This commit was SVN r30745.
 2014-02-16 22:58:01 +00:00
Oscar Vega-Gisbert
ecfca4c5f9 mpi.Comm: java object members as parameters 
This commit was SVN r30741.
 2014-02-16 18:51:14 +00:00
Oscar Vega-Gisbert
7c1802e933 mpi.Comm: java object members as parameters 
This commit was SVN r30738.
 2014-02-15 19:22:55 +00:00