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Граф коммитов

18966 Коммитов

Автор SHA1 Сообщение Дата
Jeff Squyres
337b2f7639 Output the directory where the java files were found.
Useful for debugging / understanding exactly where OMPI will be using
Java header files / libraries from.

This commit was SVN r29596.
2013-11-05 03:31:07 +00:00
Jeff Squyres
4160c37a4b Fix an ORTE -> OPAL name change that was missed in r29530.
This commit was SVN r29595.

The following SVN revision numbers were found above:
  r29530 --> open-mpi/ompi@588e7ce974
2013-11-05 03:29:26 +00:00
Rolf vandeVaart
ed7ddcd9c7 Fix CUDA-aware compile error introduces with r29581.
This commit was SVN r29594.

The following SVN revision numbers were found above:
  r29581 --> open-mpi/ompi@ee7510b025
2013-11-05 00:08:33 +00:00
Dave Goodell
1ed9b8ff43 usnic: fix segfault at finalize time
Without this commit, if you run IMB pingpong between two nodes with only
one usnic selected (e.g., via `--mca btl_usnic_if_include usnic_0`) then
the run will seem fine but will segfault at MPI_Finalize time.

This behavior has happened since Cisco v1.6 git commit ec7ddf8, upstream
trunk r29484, and upstream v1.7 r29507.

Root cause was that the free list element was being used as the recv
buffer instead of the data buffer associated with the element.  So the
reassembly code would stomp all over the free list element, which would
cause the destructor to explode when the free list attempted to clean up
all of its elements.  This surprisingly did not cause any other problems
until now.

Reviewed-by: Reese Faucette <rfaucett@cisco.com>

This commit was SVN r29593.

The following SVN revision numbers were found above:
  r29484 --> open-mpi/ompi@a6ed232a10
  r29507 --> open-mpi/ompi@790d269ce8
2013-11-04 22:52:14 +00:00
Dave Goodell
73a943492c usnic: pack via convertor on the fly
If we need to use a convertor, go back to stashing that convertor in the
frag and populating segments "on the fly" (in
ompi_btl_usnic_module_progress_sends).  Previously we would pack into a
chain of chunk segments at prepare_src time, unnecessarily consuming
additional memory.

Reviewed-by: Jeff Squyres <jsquyres@cisco.com>
Reviewed-by: Reese Faucette <rfaucett@cisco.com>

This commit was SVN r29592.
2013-11-04 22:52:03 +00:00
Dave Goodell
71d0d73575 usnic: refactor callback invocation
This makes it a little easier to see what's happening with callbacks to
the PML.

Reviewed-by: Jeff Squyres <jsquyres@cisco.com>
Reviewed-by: Reese Faucette <rfaucett@cisco.com>

This commit was SVN r29591.
2013-11-04 22:51:48 +00:00
Dave Goodell
4c791e21d2 usnic: add MSGDEBUG1_OUT/MSGDEBUG2_OUT macros
This includes suppressing picky-mode warnings about __VA_ARGS__, which
we know are supported by any compilers we care about.

Reviewed-by: Jeff Squyres <jsquyres@cisco.com>
Reviewed-by: Reese Faucette <rfaucett@cisco.com>

This commit was SVN r29590.
2013-11-04 22:51:35 +00:00
Dave Goodell
825686a205 usnic: certain send frag members are immutable
Ensure that they never are touched by checking in their destructors.

Reviewed-by: Jeff Squyres <jsquyres@cisco.com>
Reviewed-by: Reese Faucette <rfaucett@cisco.com>

This commit was SVN r29589.
2013-11-04 22:51:24 +00:00
Brian Barrett
a45d5603a3 Fix installation of libevent header files with --with-devel-headers isn't specified
cmr=v1.7.4:reviewer=rhc

This commit was SVN r29588.
2013-11-04 16:54:00 +00:00
Ralph Castain
c434e287f5 Update the search_compare script so it actually can update a branch to the same level as another one
This commit was SVN r29586.
2013-11-03 19:42:16 +00:00
Ralph Castain
eee7e49a4b Ensure the Java wrapper compiler files are in the tarball
This commit was SVN r29584.
2013-11-01 20:08:45 +00:00
Nathan Hjelm
c71125acfd Using MPI_* functions in iallreduce can cause comm-spawned processes to
crash. Update libnbc's iallreduce function to use ompi_* functions
instead.

cmr=v1.7.4:reviewer=brbarret

This commit was SVN r29582.
2013-11-01 16:45:54 +00:00
Rolf vandeVaart
ee7510b025 Remove redundant macro. This was from reviewed of earlier ticket.
Fixes trac:3878.  Reviewed by jsquyres.

This commit was SVN r29581.

The following Trac tickets were found above:
  Ticket 3878 --> https://svn.open-mpi.org/trac/ompi/ticket/3878
2013-11-01 12:19:40 +00:00
Rolf vandeVaart
99f9fdee01 Fix corner case involving threads and CUDA-aware support.
This commit was SVN r29579.
2013-10-31 20:53:46 +00:00
Nathan Hjelm
c3e614f943 Add suppport for displaying variable descriptions for bash-4 when not
using menu-complete.

This commit was SVN r29578.
2013-10-31 19:37:10 +00:00
Nathan Hjelm
9cd18f926c Add missing OSX builtin define
This commit was SVN r29576.
2013-10-31 02:06:39 +00:00
Nathan Hjelm
fd25b7af01 Fix common ugni Makefile.am for non-DSO builds.
This commit was SVN r29571.
2013-10-30 19:37:14 +00:00
Nathan Hjelm
b922cd1583 Add support for OSX builtin atomics.
OSX atomic support is disabled by default. Enable with --enable-osx-builtin-atomics.

Fixes trac:2120

This commit was SVN r29568.

The following Trac tickets were found above:
  Ticket 2120 --> https://svn.open-mpi.org/trac/ompi/ticket/2120
2013-10-30 17:48:15 +00:00
Mike Dubman
598571649a do MPI_Barrier at the end of shmem_init() code but before we use shmem native collectives
Refs: #3763

This commit was SVN r29567.
2013-10-30 17:08:54 +00:00
Nathan Hjelm
a31e617d17 Remove outdated comments in coll_basic_reduce_scatter.c.
Refs trac:1559

This commit was SVN r29566.

The following Trac tickets were found above:
  Ticket 1559 --> https://svn.open-mpi.org/trac/ompi/ticket/1559
2013-10-30 16:20:20 +00:00
Mike Dubman
e72c1ccd24 typo fix
This commit was SVN r29564.
2013-10-30 12:43:48 +00:00
Mike Dubman
b0e64427a9 ompi/mca/btl/openib: Fix memory leak and accessing free'd memory issues
Let imagine that we have two btls in btl_openib_component_init() both points to the same openib_btl->device and as a result have the same openib_btl->device->endpoints array.

Finalization phase calls twice mca_btl_openib_finalize()->mca_btl_openib_finalize_resources().
mca_btl_openib_finalize_resources() frees endpoint related btl. But the second call of mca_btl_openib_finalize_resources() checks endpoint that is released by previus call.

fixed by Igor, reviewed by miked/vasily
cmr=v1.7.4:reviewer=ompi-gk1.7

This commit was SVN r29563.
2013-10-30 11:47:49 +00:00
Nathan Hjelm
2e772ef024 Fix typo in zsh completion
This commit was SVN r29559.
2013-10-29 20:02:59 +00:00
Nathan Hjelm
167d5613db Do not do arithmetic with void * in basic neighborhood alltoall[vw].
cmr=v1.7.4:reviewer=jsquyres

This commit was SVN r29558.
2013-10-29 20:02:13 +00:00
Nathan Hjelm
396362a131 Update zsh completion based on feedback from Jeff and ensure that IFS_TMP is
declared as local.

This commit was SVN r29557.
2013-10-29 19:57:48 +00:00
Nathan Hjelm
721f464c88 Initial implementation of zsh completion for mpirun
This commit was SVN r29556.
2013-10-29 19:29:01 +00:00
Ralph Castain
46bb8c1aed Add new LANL platform files to tarball (change included in v1.7.4)
This commit was SVN r29548.
2013-10-29 16:14:29 +00:00
Jeff Squyres
6569019b06 Move all usNIC stats to _stats.c|h and export them as MPI_T pvars.
This commit moves all the module stats into their own struct so that
the stats only need to appear as a single line in the module_t
definition, and then moves all the logic for reporting the stats into
btl_usnic_stats.c|h.

Further, the stats are now exported as MPI_T_BIND_NO_OBJECT entities
(i.e., not bound to any particular MPI handle), and are marked as
READONLY and CONTINUOUS.  They currently all default to verbose level
5 ("Application tuner / detailed", according to
https://svn.open-mpi.org/trac/ompi/wiki/MCAParamLevels).

Most of the statistics are counters, but a small number are high
watermark values.  Due to how counters are reported via MPI_T, none of
the counters are exported through MPI_T if the MCA param
btl_usnic_stats_relative=1 (i.e., the module resets the stats back to
zero at a given frequency).

When MPI_T_pvar_handle_alloc() is invoked on any of these pvars, it
will return a count that is equal to the number of active usnic BTL
modules.  The values returned for any given pvar (e.g.,
num_total_sends) are an array containing one value for each active
usnic BTL module.  The ordering of values in the array is both
consistent across all usnic pvars and stable throughout a single job:
array slot 0 corresponds to module X, array slot 1 corresponds to
module Y, etc.

Mapping which array slot corresponds to which underlying Linux usnic_X
device works as follows:

 * The btl_usnic_devices MPI_T state pvar is associated with a
   btl_usnic_device MPI_T enum, and be obtained via
   MPI_T_pvar_get_info().
 * If all usNIC pvars are of length N, the values [0,N) in the
   btl_usnic_device enum are associated with strings of the
   corresponding underlying Linux device.

For exampe, to look up which Linux device is reported in all usNIC
pvars' array slot 1, look up the int value 1 in the btl_usnic_devices
enum.  Its corresponding string value is underlying Linux device name
(e.g., "usnic_1").

cmr=v1.7.4:subject="usnic BTL MPI_T pvars"

This commit was SVN r29545.
2013-10-28 22:23:08 +00:00
Nathan Hjelm
404cceb9c4 Always check the return of [mc]alloc and fix a warning introduced by
r29479.

This fixes some issues reported awhile ago in the openib btl. There
are a couple more unchecked mallocs but they are a bit more difficult
to fix since they are in void functions (btl_openib_endpoint.c).

Refs trac:2401.

cmr=v1.7.4:reviewer=miked

This commit was SVN r29543.

The following SVN revision numbers were found above:
  r29479 --> open-mpi/ompi@d6ead2a3a5

The following Trac tickets were found above:
  Ticket 2401 --> https://svn.open-mpi.org/trac/ompi/ticket/2401
2013-10-28 20:04:49 +00:00
Nathan Hjelm
b202bb0d63 Fix the recursive halfing algorithms for reduce scatter in both basic
and tuned to correctly handle 0 recvcounts.

Tested with the reproducer from #1550.

Refs trac:1559

This commit was SVN r29542.

The following Trac tickets were found above:
  Ticket 1559 --> https://svn.open-mpi.org/trac/ompi/ticket/1559
2013-10-28 19:06:38 +00:00
Mike Dubman
b5c95e8eb6 yoda spml will disqalify itself if bml/btls are not started by ompi
Starting bml/btls in yoda is pointless because btls require modex()
exchange. modex() is only done during mpi_init()

Refs trac:3763

This commit was SVN r29541.

The following Trac tickets were found above:
  Ticket 3763 --> https://svn.open-mpi.org/trac/ompi/ticket/3763
2013-10-28 18:55:50 +00:00
Nathan Hjelm
68dac45a37 Add platform files for LANL MIC nodes.
No review needed.

cmr=v1.7.4:reviewer=ompi-rm1.7

This commit was SVN r29540.
2013-10-28 16:46:04 +00:00
Ralph Castain
fb0940a9d9 Add a couple of useful tests
This commit was SVN r29539.
2013-10-28 13:24:16 +00:00
Ralph Castain
74c6b12d67 Don't force "treat warnings as errors" in the OpenSHMEM branch as this prevents building of tarballs on machines with compilers that generate warnings when the system is built with "tarball" settings. Instead, make this a configuration option so that OSHMEM developers can set it when they work on the code, but others don't have to use such restrictions.
Refs trac:3763

This commit was SVN r29538.

The following Trac tickets were found above:
  Ticket 3763 --> https://svn.open-mpi.org/trac/ompi/ticket/3763
2013-10-27 15:35:14 +00:00
Ralph Castain
01c9973a29 Don't include AM directives in continued lines
This commit was SVN r29537.
2013-10-27 05:44:55 +00:00
Ralph Castain
ed3bbb977e Cleanup wrapper makefile when java bindings not enabled
This commit was SVN r29532.
2013-10-27 04:35:43 +00:00
Ralph Castain
588e7ce974 Cleanup the Java setup m4's - orte doesn't require java, and we do all compiler checks in opal
This commit was SVN r29530.
2013-10-26 19:43:32 +00:00
Ralph Castain
25385590e6 Silence warning
This commit was SVN r29528.
2013-10-26 19:41:35 +00:00
Ralph Castain
3ec27b00ae Cleanup the Java integration - don't install the mpijavac compiler if the user didn't ask for Java bindings
This commit was SVN r29526.
2013-10-26 16:18:18 +00:00
Ralph Castain
75c306994e Add some debug
This commit was SVN r29523.
2013-10-26 02:26:21 +00:00
Ralph Castain
8c5c7d0db4 Correct a bug in handling of oob_tcp_if_include/exclude addresses by using the kernel index instead of the raw index of the interface.
Refs trac:3696

This commit was SVN r29522.

The following Trac tickets were found above:
  Ticket 3696 --> https://svn.open-mpi.org/trac/ompi/ticket/3696
2013-10-26 00:47:14 +00:00
Joshua Ladd
2f22329ea4 This commit (hopefully) fully addresses the enabling of oshmem fortran bindings given its dependency on the building of fortran bindings in OMPI. This commit closes trac:3851.
This commit was SVN r29521.

The following Trac tickets were found above:
  Ticket 3851 --> https://svn.open-mpi.org/trac/ompi/ticket/3851
2013-10-25 15:42:10 +00:00
Joshua Ladd
6b4bfcf4d7 This commit fixes pointer arithmetic done with void * pointers in memheap. This commit closes trac:3844
This commit was SVN r29520.

The following Trac tickets were found above:
  Ticket 3844 --> https://svn.open-mpi.org/trac/ompi/ticket/3844
2013-10-25 15:27:50 +00:00
Mike Dubman
9cea216c0e fix autogen warn, fixed by Roman, reviewed by miked
This commit was SVN r29519.
2013-10-25 14:39:37 +00:00
Mike Dubman
5cc1f3803b shmem-fortran fix, naming conventions for shmem option, examples
This commit was SVN r29518.
2013-10-25 05:25:41 +00:00
Nathan Hjelm
a4ae1705dd completion: only call sort when using comm to remove items from a list
This commit was SVN r29517.
2013-10-24 23:31:43 +00:00
Nathan Hjelm
c8844d1514 Remove some code left over from debugging the completion script
This commit was SVN r29516.
2013-10-24 23:03:54 +00:00
Nathan Hjelm
ac23c02bc2 Some cleanup of the bash completion code
This commit was SVN r29515.
2013-10-24 22:47:13 +00:00
Rolf vandeVaart
fa5d20a5ec Add optimization that can be used when CUDA 6.0 comes out. Use new pointer attribute.
This commit was SVN r29514.
2013-10-24 21:17:58 +00:00
Nathan Hjelm
d152ebff9e Add a bash completion script for orterun/mpirun.
Features of v 1.0:

 - Completion of all switches.
 - Completion of mca variable names.
 - Completion of mca variable values for enumerated variables and component
   selection variables.
 - Completion of --bind-to and --map-by.

This commit was SVN r29513.
2013-10-24 19:35:38 +00:00