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Автор SHA1 Сообщение Дата
Mike Dubman
4572bd58e5 OSHMEM: fix bug in scoll/mpi, add fortran support
dtypes support to oshmem scoll mpi. added comment to
oshmem scoll mpi component regarding casting size_t to int.

Fixed by Elena, Reviewed by Igor/Mike

cmr=v1.7.5:reviewer=ompi-rm1.7

This commit was SVN r30856.
2014-02-26 17:06:44 +00:00
Mike Dubman
323e4418b9 OSHMEM: extract memheap allocate methods into separate framework
- similar to opal/shmem
- next step is some refactoring and merge into opal/shmem
 Developed by Igor, reviewed by AlexM, MikeD

This commit fixes trac:4261.

This commit was SVN r30855.

The following Trac tickets were found above:
  Ticket 4261 --> https://svn.open-mpi.org/trac/ompi/ticket/4261
2014-02-26 16:32:23 +00:00
Nathan Hjelm
dfe4a504e4 udcm: fix race between ack arrival and message send and potential hang in udcm
finalize.

Closes trac:4290

cmr=v1.7.5:reviewer=miked

This commit was SVN r30854.

The following Trac tickets were found above:
  Ticket 4290 --> https://svn.open-mpi.org/trac/ompi/ticket/4290
2014-02-26 15:33:27 +00:00
Nathan Hjelm
30b61a3333 Fix a number of issues in the new one sided code.
- Fix several typos is osc/rdma.

 - Fix a locking issue in osc/sm that was caused by an incorrect
   assumption about the semantics of opal_atomic_add_32.

 - Always unlock the accumulation lock in osc/sm.

 - The base of a processes shared memory window should be NULL if
   the size is zero. Fixed.

cmr=v1.7.5:ticket=trac:4304

This commit was SVN r30853.

The following Trac tickets were found above:
  Ticket 4304 --> https://svn.open-mpi.org/trac/ompi/ticket/4304
2014-02-26 15:33:18 +00:00
Jeff Squyres
4e282a3295 Consolidate into a single, outter loop of ibv_create_ah() calls
Follow on to SVN trunk r30850: consolidate the ibv_create_ah() calls
into a single loop, MPI_WAITALL-style.  That is, call the (effectively
non-blocking) ibv_create_ah() for each endpoint.  If we get
NULL+EAGAIN, it means that the UDP ARP is still ongoing down in the
kernel, so just try again later.  We put these all into a single loop
because it allows us to parallelize the ARP progress in the kernel.

cmr=v1.7.5:ticket=trac:4253

This commit was SVN r30852.

The following SVN revision numbers were found above:
  r30850 --> open-mpi/ompi@3641500442

The following Trac tickets were found above:
  Ticket 4253 --> https://svn.open-mpi.org/trac/ompi/ticket/4253
2014-02-26 11:02:12 +00:00
Jeff Squyres
52c48b34f0 Set svn:ignore in tests directory
cmr=v1.7.5:ticket=trac:4253

This commit was SVN r30851.

The following Trac tickets were found above:
  Ticket 4253 --> https://svn.open-mpi.org/trac/ompi/ticket/4253
2014-02-26 10:58:48 +00:00
Dave Goodell
3641500442 usnic: Loop on the ibv_create_ah call.
ibv_create_ah() may need to effect an ARP resolution, which may take
some time.  Rather than blocking in ibv_create_ah(), the usNIC driver
may return NULL and set errno to EAGAIN indicating that we should try
again (i.e., the ARP resolution is proceeding under the covers).

So add a simple loop here to loop over ibv_create_ah() until it
returns non-(NULL+EAGAIN).  A future commit will make this a bit more
efficient.

Authored-by: Jeff Squyres <jsquyres@cisco.com>
Reviewed-by: Dave Goodell <dgoodell@cisco.com>

cmr=v1.7.5:ticket=trac:4253

This commit was SVN r30850.

The following Trac tickets were found above:
  Ticket 4253 --> https://svn.open-mpi.org/trac/ompi/ticket/4253
2014-02-26 07:50:38 +00:00
Dave Goodell
c40f8879c8 usnic: improve interface matching (esp. for UDP)
Prior to this commit we matched local interfaces to remote interfaces in
order to create endpoints in a simplistic way.  If any remote interfaces
were on the same subnet as any of our local interfaces then only local
interfaces would be paired (IP-routed remote interfaces would be
ignored).

This commit introduces a more general scheme which attempts to make the
"best" pairing of local interfaces to remote interfaces.  We now cast
the problem as a graph theory problem known as the "Assignment Problem",
or finding a maximum-cardinality, minimum-weight bipartite matching.  We
solve this problem by reducing the bipartite graph of interface
connectivity to a flow network and then solving for a minimum cost flow.
This is then easily converted into back into a matching on the original
bipartite graph.

In the new scheme, interfaces on the same subnet are preferred over
interfaces requiring intermediate routing hops and higher bandwidth
links are preferred over lower bandwidth links.

Reviewed-by: Jeff Squyres <jsquyres@cisco.com>

cmr=v1.7.5:ticket=trac:4253

This commit was SVN r30849.

The following Trac tickets were found above:
  Ticket 4253 --> https://svn.open-mpi.org/trac/ompi/ticket/4253
2014-02-26 07:50:26 +00:00
Dave Goodell
47148ab3cb usnic: helper routines for rtnetlink route lookups
Querying the OS routing table is important for making decisions about
which local and remote interfaces should be paired into reliable
communication channels.

Reviewed-by: Jeff Squyres <jsquyres@cisco.com>

cmr=v1.7.5:ticket=trac:4253

This commit was SVN r30848.

The following Trac tickets were found above:
  Ticket 4253 --> https://svn.open-mpi.org/trac/ompi/ticket/4253
2014-02-26 07:50:10 +00:00
Dave Goodell
db14c706ce usnic: add graph utility code
This code is intended to support usNIC interface matching functionality.
We currently view that problem as essentially the "Assignment Problem"
(http://en.wikipedia.org/wiki/Assignment_problem), for which there are
many possible solution approaches, including flow-network analysis.  In
the future, we might transition to a more nuanced view of the problem
which would likely also be flow-network based.

To this end, the current code focuses on providing one major algorithm
to the core usnic BTL: `ompi_btl_usnic_solve_bipartite_assignment`.  It
also exposes several typical and necessary functions for constructing,
manipulating, and querying weighted, directed graphs.

Reviewed-by: Jeff Squyres <jsquyres@cisco.com>

cmr=v1.7.5:ticket=trac:4253

This commit was SVN r30847.

The following Trac tickets were found above:
  Ticket 4253 --> https://svn.open-mpi.org/trac/ompi/ticket/4253
2014-02-26 07:49:54 +00:00
Dave Goodell
5bf969e63b usnic: unit test parse_ifex_str
Reviewed-by: Jeff Squyres <jsquyres@cisco.com>

cmr=v1.7.5:ticket=trac:4253

This commit was SVN r30846.

The following Trac tickets were found above:
  Ticket 4253 --> https://svn.open-mpi.org/trac/ompi/ticket/4253
2014-02-26 07:48:05 +00:00
Dave Goodell
921a29e41f usnic: add simple unit testing infrastructure
This commit adds mechanisms for writing and running unit tests in the
usnic BTL.  The short version of how to run the tests is:

1. Configure with `--enable-ompi-btl-usnic-unit-tests`.  This will cause
   the unit testing code and test runner utility to be built.

2. Run the tests by running `ompi_btl_usnic_run_tests`.

See `README.test` for full details.

Reviewed-by: Jeff Squyres <jsquyres@cisco.com>

cmr=v1.7.5:ticket=trac:4253

This commit was SVN r30845.

The following Trac tickets were found above:
  Ticket 4253 --> https://svn.open-mpi.org/trac/ompi/ticket/4253
2014-02-26 07:47:50 +00:00
Dave Goodell
044a190cac usnic: consolidate orte includes into compat.h
These includes only exist in the Cisco-internal usnic-v1.6 code base,
but they should not exist anywhere except btl_usnic_compat.h in order to
minimize source differences between usnic-v1.6 and v1.7/trunk.

Reviewed-by: Jeff Squyres <jsquyres@cisco.com>

cmr=v1.7.5:ticket=trac:4253

This commit was SVN r30844.

The following Trac tickets were found above:
  Ticket 4253 --> https://svn.open-mpi.org/trac/ompi/ticket/4253
2014-02-26 07:47:33 +00:00
Dave Goodell
62dc42f628 usnic: check packet/segment lengths
Lower layer (hardware or software) bugs can result in a mismatch between
our BTL-layer payload size and the actual packet length.  We now check
that in order to catch these cases, which otherwise can result in
MPI-layer message corruption.

Reviewed-by: Jeff Squyres <jsquyres@cisco.com>

cmr=v1.7.5:ticket=trac:4253

This commit was SVN r30843.

The following Trac tickets were found above:
  Ticket 4253 --> https://svn.open-mpi.org/trac/ompi/ticket/4253
2014-02-26 07:47:19 +00:00
Dave Goodell
3b5b87c325 usnic: add missing MSGDEBUG in recv path
We were missing a debug message for a very common recv case, making it a
bit harder to follow a debug log.

Reviewed-by: Jeff Squyres <jsquyres@cisco.com>

cmr=v1.7.5:ticket=trac:4253

This commit was SVN r30842.

The following Trac tickets were found above:
  Ticket 4253 --> https://svn.open-mpi.org/trac/ompi/ticket/4253
2014-02-26 07:47:05 +00:00
Dave Goodell
f6036d11c8 usnic: fix sender hash comparisons for UDP
There was a duplicated subnet check in the sender hash lookup routine.
This caused receivers to always fail the sender hash lookup if the
sender was in a different subnet, so the receiver would discard the
packet as though it were coming from a different job.

cmr=v1.7.5:ticket=trac:4253

This commit was SVN r30841.

The following Trac tickets were found above:
  Ticket 4253 --> https://svn.open-mpi.org/trac/ompi/ticket/4253
2014-02-26 07:46:50 +00:00
Dave Goodell
90d68730f1 usnic: fix SEGV when ibv_create_ah fails
If ibv_create_ah fails, we will not initialize the `endpoint->proc`.

Reviewed-by: Jeff Squyres <jsquyres@cisco.com>

cmr=v1.7.5:ticket=trac:4253

This commit was SVN r30840.

The following Trac tickets were found above:
  Ticket 4253 --> https://svn.open-mpi.org/trac/ompi/ticket/4253
2014-02-26 07:46:37 +00:00
Dave Goodell
a54f53f242 usnic: also match interfaces in different subnets
This functionality is required for routable UDP/IP usnic traffic.

Previously we would only setup endpoints for remote interfaces on the
same subnet as the current module's local interface.  This behavior
still holds if two processes share any common subnets.  However, if the
two processes only have no subnets in common then we assume that all
interfaces are reachable from all other interfaces and wire them up in a
1-1, randomly-matched order somewhat similarly to the "tcp" BTL's
behavior.

Only match in different subnets if we detect UDP support in the lower
layer.

Reviewed-by: Jeff Squyres <jsquyres@cisco.com>

cmr=v1.7.5:ticket=trac:4253

This commit was SVN r30839.

The following Trac tickets were found above:
  Ticket 4253 --> https://svn.open-mpi.org/trac/ompi/ticket/4253
2014-02-26 07:44:49 +00:00
Dave Goodell
4875f48eaa usnic: enable UDP support
This commit decouples OMPI deployment from the version(s) of the lower
layers of the stack by probing for UDP support.

Verbs applications assume a 40-byte header (there is no current
mechanism for querying payload offset).  So to support a 42-byte UDP
header without causing existing applications like ibv_ud_pingpong or
older versions of OMPI to crash, we must inform libusnic_verbs that we
are aware of the nonstandard payload offset.  We do this by overriding
the `transport_type` field of the device to be 42 before calling
`ibv_open_device`.  If the library resets it to something else, then we
know the lower layers are UDP capable.  Otherwise we use the older
custom-L2 format.

This necessitated some minor ugliness in common_verbs, but it's as tidy
as Jeff and I know how to make it right now.

This commit only adds support for UDP headers and connectivity over the
same L2 network, it does not touch routing or interface pairing.

Reviewed-by: Jeff Squyres <jsquyres@cisco.com>

cmr=v1.7.5:ticket=trac:4253

This commit was SVN r30838.

The following Trac tickets were found above:
  Ticket 4253 --> https://svn.open-mpi.org/trac/ompi/ticket/4253
2014-02-26 07:44:35 +00:00
Dave Goodell
e10ad5763f usnic: rearrange component struct field order
Just trying to be deliberate about keeping fastpath-accessed fields
grouped together to fit into the same 64-byte cache line.

Reviewed-by: Jeff Squyres <jsquyres@cisco.com>

cmr=v1.7.5:ticket=trac:4253

This commit was SVN r30837.

The following Trac tickets were found above:
  Ticket 4253 --> https://svn.open-mpi.org/trac/ompi/ticket/4253
2014-02-26 07:40:53 +00:00
Dave Goodell
5d7eabbcd1 usnic: Change tiny_mtu to a size_t (it's compared against an unsigned value)
Authored-by: Jeff Squyres <jsquyres@cisco.com>
Reviewed-by: Reese Faucette <rfaucett@cisco.com>

cmr=v1.7.5:ticket=trac:4253

This commit was SVN r30836.

The following Trac tickets were found above:
  Ticket 4253 --> https://svn.open-mpi.org/trac/ompi/ticket/4253
2014-02-26 07:40:37 +00:00
Dave Goodell
fef38d7e42 usnic: Fix a few compiler warnings about types of printed variables
Authored-by: Jeff Squyres <jsquyres@cisco.com>

cmr=v1.7.5:ticket=trac:4253

This commit was SVN r30835.

The following Trac tickets were found above:
  Ticket 4253 --> https://svn.open-mpi.org/trac/ompi/ticket/4253
2014-02-26 07:40:23 +00:00
Dave Goodell
cadaa1c424 usnic: Shrink sequence numbers to 16 bits
Authored-by: Reese Faucette <rfaucett@cisco.com>
Reviewed-by: Jeff Squyres <jsquyres@cisco.com>

cmr=v1.7.5:ticket=trac:4253

This commit was SVN r30834.

The following Trac tickets were found above:
  Ticket 4253 --> https://svn.open-mpi.org/trac/ompi/ticket/4253
2014-02-26 07:40:10 +00:00
Dave Goodell
707e594d13 usnic: Use INLINE flag more often, saving the DMA is useful.
Authored-by: Reese Faucette <rfaucett@cisco.com>
Reviewed-by: Jeff Squyres <jsquyres@cisco.com>

cmr=v1.7.5:ticket=trac:4253

This commit was SVN r30833.

The following Trac tickets were found above:
  Ticket 4253 --> https://svn.open-mpi.org/trac/ompi/ticket/4253
2014-02-26 07:39:53 +00:00
Dave Goodell
dbbe6a8254 usnic: fix proc structure memory leak
Valgrind showed this one, just a bit of sloppiness with the reference
counting.

Reviewed-by: Jeff Squyres <jsquyres@cisco.com>

cmr=v1.7.5:ticket=trac:4253

This commit was SVN r30832.

The following Trac tickets were found above:
  Ticket 4253 --> https://svn.open-mpi.org/trac/ompi/ticket/4253
2014-02-26 07:39:34 +00:00
Dave Goodell
4af332bd4e Fix the logic in ompi_common_verbs_find_ports().
The logic did not correctly perform the OR behavior that is described
in the doxy docs for this function.  This commit fixes the logic so
that a port will be included if it has supports any of the
capabilities indicated by the passed-in flags.

Authored-by: Jeff Squyres <jsquyres@cisco.com>
Reviewed-by: Dave Goodell <dgoodell@cisco.com>

cmr=v1.7.5:ticket=trac:4253

This commit was SVN r30831.

The following Trac tickets were found above:
  Ticket 4253 --> https://svn.open-mpi.org/trac/ompi/ticket/4253
2014-02-26 07:39:21 +00:00
Ralph Castain
fbeb0cac10 Silence warning
cmr=v1.7.5:reviewer=ompi-gk1.7

This commit was SVN r30828.
2014-02-25 23:50:12 +00:00
Ralph Castain
fea8a52983 Cleanup trailing spaces and use of tab instead of spaces
Refs trac:4298

This commit was SVN r30827.

The following Trac tickets were found above:
  Ticket 4298 --> https://svn.open-mpi.org/trac/ompi/ticket/4298
2014-02-25 23:41:55 +00:00
Ralph Castain
b880aa46bd Update the map-by obj and map-by obj:span mappers to correct for errors in computing carryover across the nodes. Be a little less complex in the algorithm so it is easier to follow and debug.
Refs trac:4296

This commit was SVN r30826.

The following Trac tickets were found above:
  Ticket 4296 --> https://svn.open-mpi.org/trac/ompi/ticket/4296
2014-02-25 23:32:43 +00:00
Joshua Ladd
a0a850a77b Fixing warnings in oshmem/mca/scoll/mpi.
Refs trac:4302

This commit was SVN r30824.

The following Trac tickets were found above:
  Ticket 4302 --> https://svn.open-mpi.org/trac/ompi/ticket/4302
2014-02-25 21:24:15 +00:00
Nathan Hjelm
acbd6032f9 Helps to include the correct header.
cmr=v1.7.5:ticket=trac:4304

This commit was SVN r30821.

The following Trac tickets were found above:
  Ticket 4304 --> https://svn.open-mpi.org/trac/ompi/ticket/4304
2014-02-25 19:14:48 +00:00
Nathan Hjelm
5edacac301 osc/rdma: add missing include
cmr=v1.7.5:ticket=trac:4304

This commit was SVN r30820.

The following Trac tickets were found above:
  Ticket 4304 --> https://svn.open-mpi.org/trac/ompi/ticket/4304
2014-02-25 19:11:19 +00:00
Ralph Castain
0c68705b9d Add ignores
This commit was SVN r30819.
2014-02-25 19:09:07 +00:00
Ralph Castain
49d938de29 Merge one-sided updates to the trunk - written by Brian Barrett and Nathan Hjelmn
cmr=v1.7.5:reviewer=hjelmn:subject=Update one-sided to MPI-3

This commit was SVN r30816.
2014-02-25 17:36:43 +00:00
Mike Dubman
202bf90287 OSHMEM: ikrit optimization
no need pre-register heap if MXM/ud is used
fixed by Alex, reviewed by Miked

cmr=v1.7.5:reviewer=ompi-rm1.7

This commit was SVN r30809.
2014-02-25 15:03:53 +00:00
Mike Dubman
180e4f06bf OSHMEM: add support for MPI collectives
oshmem collective can select MPI collectives modules as provider.

Developed by Elena, reviewed by Miked

cmr=v1.7.5:reviewer=ompi-rm1.7

This commit was SVN r30808.
2014-02-25 15:01:10 +00:00
Joshua Ladd
9ea9bec4ad Addressing Jeff's comments:
1. Changed rng_buff_t --> opal_rng_buff_t
2. All global variables obey the prefix rule
3. Old code has been removed 
4. Found a couple of unnecessary includes

Refs trac:4298

This commit was SVN r30807.

The following Trac tickets were found above:
  Ticket 4298 --> https://svn.open-mpi.org/trac/ompi/ticket/4298
2014-02-24 23:18:35 +00:00
Oscar Vega-Gisbert
90625573ff mpi.Request: avoid calling JNI free if it is null
This commit was SVN r30806.
2014-02-24 22:28:59 +00:00
Jeff Squyres
d07d1864ae Revert r30804.
We're going to be bringing a bunch of usnic code to the SVN trunk
soon, and I basically brought this commit over out of order.  So I'm
reverting it for now; the same functionality will come back shortly.

This commit was SVN r30805.

The following SVN revision numbers were found above:
  r30804 --> open-mpi/ompi@5bedcc15bf
2014-02-24 19:12:49 +00:00
Jeff Squyres
5bedcc15bf Support the IBV_*_USNIC_* verbs constants.
These constants are now upstream (see
https://git.kernel.org/cgit/libs/infiniband/libibverbs.git/commit/?id=f57a9c67eabb9e7f19c624ac3c8c27b7be55796c),
so let's support them properly in Open MPI.

Added bonus: consolidating these checks up in
ompi_check_openfabrics.m4 allowed removing some custom checks and
AC_DEFINE's from the usnic configure.m4 script.

Also change the usnic/configure.m4 check for IBV_EVENT_GID_CHANGE to
use AC_CHECK_DECLS (vs. AC_CHECK_DECL).

cmr=v1.7.5:reviewer=dgoodell

This commit was SVN r30804.
2014-02-24 18:57:04 +00:00
Jeff Squyres
1b855eca8e A few fixes after r30801:
* Use the prefix rule for global variables
 * Elimiante seed_prng() since it isn't necessary any more

These files will need to get edited again then the RNG type obeys the
prefix rule.

Refs trac:4298

This commit was SVN r30803.

The following SVN revision numbers were found above:
  r30801 --> open-mpi/ompi@e39d9f4080

The following Trac tickets were found above:
  Ticket 4298 --> https://svn.open-mpi.org/trac/ompi/ticket/4298
2014-02-24 17:47:52 +00:00
Mike Dubman
5ed50793d5 OSHMEM: misc ikrit/mxm enhancements
- fix mxm/tl selection logic
- do not require memory registration if mxm/ud was selected

fixed by Alex, reviewed by Miked

cmr=v1.7.5:reviewer=ompi-rm1.7

This commit was SVN r30802.
2014-02-24 07:06:57 +00:00
Joshua Ladd
e39d9f4080 Per the RFC schedule, add an additive lagged Fibonacci parallel random number generator to OPAL. In order to use, please add the following header to your code: opal/util/alfg.h. See ompi/mca/btl/openib/connect/btl_openib_connect_udcm.c for an example how to seed with opal_srand and invoke the generator with opal_rand. This should be added to
cmr=v1.7.5:reviewer=rhc:subject=Add an OPAL RNG

This commit was SVN r30801.
2014-02-23 21:41:38 +00:00
Oscar Vega-Gisbert
75d40c0ae7 Errhandler doesn't need an init method.
This commit was SVN r30800.
2014-02-23 20:10:54 +00:00
Oscar Vega-Gisbert
ad8f57396a Avoid creating status objects in the C side.
It is necessary because calling java methods from C is very slow.

This commit was SVN r30799.
2014-02-23 20:08:53 +00:00
Ralph Castain
c8112c1086 Loadbalancing across nodes (i.e., map-by node) wasn't working correctly - the algorithm relied on the nodes being defined in descending order of slots, or the numbe
r of slots remaing to be assigned being only one/node. Regardless, it didn't work for the case where nodes were defined in ascending order of slots.

Tetsuya's proposed patch didn't solve the problem for me, but it did correct the case where cpus/proc > 1. The final patch requires that we loop over the assignment
 algo until all procs are assigned or all nodes are filled - any remaining procs are then handled in the cleanup loop.

cmr=v1.7.5:reviewer=rhc:subject=fix map-by node for different cases

This commit was SVN r30798.
2014-02-22 16:39:41 +00:00
Adrian Reber
f17ec1ab10 ESS/BASE: orte-restart needs sstore
Running orte-restart requires an initialized sstore.
This opens the sstore component for FT builds just like
the snapc component.

This commit was SVN r30796.
2014-02-21 21:23:26 +00:00
Nathan Hjelm
bd275e642e btl/ugni: fix typo
cmr=v1.7.5:ticket=trac:4151

This commit was SVN r30795.

The following Trac tickets were found above:
  Ticket 4151 --> https://svn.open-mpi.org/trac/ompi/ticket/4151
2014-02-21 17:46:22 +00:00
Ralph Castain
29a7eda280 Remove executable property
This commit was SVN r30791.
2014-02-21 17:27:47 +00:00
Ralph Castain
0319d5fb19 Seeing some errors coming out of MTT on this component, so turn it off for now and will debug later
This commit was SVN r30789.
2014-02-21 16:31:52 +00:00