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Граф коммитов

678 Коммитов

Автор SHA1 Сообщение Дата
Josh Hursey
28681deffa Backout the ORCA commit. :(
There is a linking issue on Mac OSX that needs to be addressed before this is able to come back into the trunk.

This commit was SVN r26676.
2012-06-27 01:28:28 +00:00
Josh Hursey
542330e3a7 Commit of ORCA: Open MPI Runtime Collaborative Abstraction
This is a runtime interposition project that sits between the OMPI and ORTE layers in Open MPI.

The project is described on the wiki:
  https://svn.open-mpi.org/trac/ompi/wiki/Runtime_Interposition

And on this email thread:
  http://www.open-mpi.org/community/lists/devel/2012/06/11109.php

This commit was SVN r26670.
2012-06-26 21:42:16 +00:00
Jeff Squyres
d7787b625e Fix memchecker usage in these functions -- these variables are not
used.  They're just copy-n-paste errors from the MPI_Reduce_scatter
variants. 

This commit was SVN r26669.
2012-06-26 21:24:45 +00:00
Jeff Squyres
d55e94678e Fix the names of the profiled versions of wtick/wtime so that the
Fortran compiler knows the return type of the functions.

This commit was SVN r26662.
2012-06-26 13:38:19 +00:00
Jeff Squyres
1923f89170 Limit the types that we import when building the PMPI interfaces (we
already did this for the MPI interfaces).

This commit was SVN r26652.
2012-06-25 20:00:09 +00:00
Jeff Squyres
654259154d Ensure that [P]MPI_Iscan is compiled into the mpifh library on
weak-symbol-supporting systems.

This commit was SVN r26650.
2012-06-25 15:37:08 +00:00
Jeff Squyres
dd70f84e3d Fix some linker problems with MPI_[Ir|R]educe_scatter_block:
* Ensure the profiling version is linked in
 * Ensure that PMPI variants are prototyped in mpi.h
 * Ensure weak symbols are set correctly

This commit was SVN r26649.
2012-06-25 15:26:14 +00:00
Jeff Squyres
b979fe7baf Make a bunch of scripts be executable.
This commit was SVN r26642.
2012-06-22 22:02:45 +00:00
Brian Barrett
b9e8e4aeb9 * Initial merge of the non-blocking collectives interface. No implementation of
the back-end yet, coming real soon now, need to solve some tag issues first.

This commit was SVN r26641.
2012-06-22 20:54:12 +00:00
Shiqing Fan
aa6cde9886 Change f77 to fortran for the rest of windows build files.
This commit was SVN r26558.
2012-06-06 14:09:51 +00:00
Jeff Squyres
91bae49090 A bunch of fixes to the f08 bindings:
* Add in a bunch of missinc MPI_Op pre-defined constants
 * Fix a few parameter types
 * Ensure that MPI_Op handles have the same values in all interfaces
   (i.e., add them to the mpif-common.pl generator script)

This commit was SVN r26511.
2012-05-29 17:54:33 +00:00
George Bosilca
3704bfccbe The sum of the local and remote recvcounts is identical (per MPI standard
requirement) so the recvcounts array is bounded by the number of
participants in the local group.

This commit was SVN r26496.
2012-05-25 04:27:19 +00:00
Terry Dontje
19992f80f0 use OMPI_ARRAY_LOGICAL_2_INT_CLEANUP instead of free
This commit was SVN r26494.
2012-05-24 21:06:03 +00:00
George Bosilca
5ff74babc6 Correctly use remote size where necessary. Completements the
patches for ticket #3105.

This commit was SVN r26490.
2012-05-24 13:41:51 +00:00
Jeff Squyres
4bda5da63a Similar to r26488, also update the param error checking for
REDUCE_SCATTER, SCATTERV, and GATHERV.  Thanks to the mpi4py community
for reporting the issue.

This commit was SVN r26489.

The following SVN revision numbers were found above:
  r26488 --> open-mpi/ompi@42793aa10f
2012-05-24 13:26:44 +00:00
Jeff Squyres
42793aa10f As reported by the mpi4py community (Bennet Fauber, Lisandro Dalcin,
Jonathan Dursi), fix a bug in the parameter verification of
MPI_ALLGATHERV: ensure to use the ''remote'' group size when checking
the recvcounts array.

This commit was SVN r26488.
2012-05-24 10:25:21 +00:00
Jeff Squyres
2cf8b874d5 Oops -- forgot to include file_get_position_shared in r26439.
This commit was SVN r26442.

The following SVN revision numbers were found above:
  r26439 --> open-mpi/ompi@d74795b299
2012-05-15 19:51:15 +00:00
Jeff Squyres
d74795b299 Fix #3094: do the correct cast for the right integer size.
This commit was SVN r26439.
2012-05-15 15:15:33 +00:00
Ralph Castain
fd796cce0a Add an allocator tool for finding HDFS file locations and obtaining allocations for those nodes (supports both Hadoop 1 and 2). Split the Java support into two parts: detection of Java support and request for Java bindings.
This commit was SVN r26414.
2012-05-09 01:13:49 +00:00
Jeff Squyres
245812c34b * s/f77/fortran/gi in a lot of places
* Remove unused #defines in mpi.h.in
 * Add OMPI_PARAM_CHECK in mpi.h.in (so that we can check for it in tests)
 * Clean up some comments in mpif-common.h

This commit was SVN r26347.
2012-04-27 01:09:37 +00:00
Ralph Castain
8fbcf375da One more blasted missing file
This commit was SVN r26338.
2012-04-25 03:16:44 +00:00
Ralph Castain
ec42c6c510 add missing file to tarball
This commit was SVN r26337.
2012-04-25 02:19:00 +00:00
Jeff Squyres
877ed0b41e Only include the MPI_File functions if we did not --disable-mpi-io
This commit was SVN r26335.
2012-04-25 01:21:13 +00:00
Jeff Squyres
634326ee87 Fix typos: add TKR versions of MPI_MRECV and MPI_IMRECV into the
Makefile.am so that their scripts get invoked and the wrappers get
compiled into the libmpi_usempi.la library.

This commit was SVN r26324.
2012-04-24 18:04:15 +00:00
Jeff Squyres
4b047c4257 Fix typos in the memchecker sections of MPI_IMRECV and MPI_MRECV, and
define the missing function memchecker_message().

Thanks to MTT for catching these errors.

This commit was SVN r26314.
2012-04-23 21:10:19 +00:00
Jeff Squyres
c190f3e7ce Add a PDF of the C to Fortran type mapping, taken from the Fortran
spec document.

This commit was SVN r26292.
2012-04-18 22:50:35 +00:00
Jeff Squyres
f713045d07 Fix #if macro name
This commit was SVN r26285.
2012-04-18 16:18:40 +00:00
Jeff Squyres
253444c6d0 == Highlights ==
1. New mpifort wrapper compiler: you can utilize mpif.h, use mpi, and use mpi_f08 through this one wrapper compiler
 1. mpif77 and mpif90 still exist, but are sym links to mpifort and may be removed in a future release
 1. The mpi module has been re-implemented and is significantly "mo' bettah"
 1. The mpi_f08 module offers many, many improvements over mpif.h and the mpi module

This stuff is coming from a VERY long-lived mercurial branch (3 years!); it'll almost certainly take a few SVN commits and a bunch of testing before I get it correctly committed to the SVN trunk.

== More details ==

Craig Rasmussen and I have been working with the MPI-3 Fortran WG and Fortran J3 committees for a long, long time to make a prototype MPI-3 Fortran bindings implementation.  We think we're at a stable enough state to bring this stuff back to the trunk, with the goal of including it in OMPI v1.7.  

Special thanks go out to everyone who has been incredibly patient and helpful to us in this journey:

 * Rolf Rabenseifner/HLRS (mastermind/genius behind the entire MPI-3 Fortran effort)
 * The Fortran J3 committee
 * Tobias Burnus/gfortran
 * Tony !Goetz/Absoft
 * Terry !Donte/Oracle
 * ...and probably others whom I'm forgetting :-(

There's still opportunities for optimization in the mpi_f08 implementation, but by and large, it is as far along as it can be until Fortran compilers start implementing the new F08 dimension(..) syntax.

Note that gfortran is currently unsupported for the mpi_f08 module and the new mpi module.  gfortran users will a) fall back to the same mpi module implementation that is in OMPI v1.5.x, and b) not get the new mpi_f08 module.  The gfortran maintainers are actively working hard to add the necessary features to support both the new mpi_f08 module and the new mpi module implementations.  This will take some time.

As mentioned above, ompi/mpi/f77 and ompi/mpi/f90 no longer exist.  All the fortran bindings implementations have been collated under ompi/mpi/fortran; each implementation has its own subdirectory:

{{{
ompi/mpi/fortran/
  base/               - glue code
  mpif-h/             - what used to be ompi/mpi/f77
  use-mpi-tkr/        - what used to be ompi/mpi/f90
  use-mpi-ignore-tkr/ - new mpi module implementation
  use-mpi-f08/        - new mpi_f08 module implementation
}}}

There's also a prototype 6-function-MPI implementation under use-mpi-f08-desc that emulates the new F08 dimension(..) syntax that isn't fully available in Fortran compilers yet.  We did that to prove it to ourselves that it could be done once the compilers fully support it.  This directory/implementation will likely eventually replace the use-mpi-f08 version.

Other things that were done:

 * ompi_info grew a few new output fields to describe what level of Fortran support is included
 * Existing Fortran examples in examples/ were renamed; new mpi_f08 examples were added
 * The old Fortran MPI libraries were renamed:
   * libmpi_f77 -> libmpi_mpifh
   * libmpi_f90 -> libmpi_usempi
 * The configury for Fortran was consolidated and significantly slimmed down.  Note that the F77 env variable is now IGNORED for configure; you should only use FC. Example:
{{{
shell$ ./configure CC=icc CXX=icpc FC=ifort ...
}}}

All of this work was done in a Mercurial branch off the SVN trunk, and hosted at Bitbucket.  This branch has got to be one of OMPI's longest-running branches.  Its first commit was Tue Apr 07 23:01:46 2009 -0400 -- it's over 3 years old!  :-)  We think we've pulled in all relevant changes from the OMPI trunk (e.g., Fortran implementations of the new MPI-3 MPROBE stuff for mpif.h, use mpi, and use mpi_f08, and the recent Fujitsu Fortran patches).

I anticipate some instability when we bring this stuff into the trunk, simply because it touches a LOT of code in the MPI layer in the OMPI code base.  We'll try our best to make it as pain-free as possible, but please bear with us when it is committed.

This commit was SVN r26283.
2012-04-18 15:57:29 +00:00
Ralph Castain
5f5c23e3e5 Fix comm_join by ensuring the two processes figure out which will send_first and which will recv first.
This commit was SVN r26257.
2012-04-09 22:14:14 +00:00
Ralph Castain
bd8b4f7f1e Sorry for mid-day commit, but I had promised on the call to do this upon my return.
Roll in the ORTE state machine. Remove last traces of opal_sos. Remove UTK epoch code.

Please see the various emails about the state machine change for details. I'll send something out later with more info on the new arch.

This commit was SVN r26242.
2012-04-06 14:23:13 +00:00
Eugene Loh
dffc1c5d43 The copyright notices that should have been in r26156.
This commit was SVN r26157.

The following SVN revision numbers were found above:
  r26156 --> open-mpi/ompi@e1f5c0125f
2012-03-16 04:59:58 +00:00
Eugene Loh
e1f5c0125f r26138 provided quick returns for count==0 for
[test|wait][all|any|some].  Here, set output values as well.
http://www.open-mpi.org/community/lists/users/2012/03/18790.php

This commit was SVN r26156.

The following SVN revision numbers were found above:
  r26138 --> open-mpi/ompi@1e92bc0fd1
2012-03-15 22:02:46 +00:00
Jeff Squyres
1e92bc0fd1 Per request from Jeremiah Willcock, support the array-based MPI_TEST
and MPI_WAIT functions with a count of 0 (i.e., just return SUCCESS
and don't do anything).

This commit was SVN r26138.
2012-03-14 14:36:04 +00:00
Josh Hursey
4630c4060c Abstract MPI_Group_compare to an OMPI function for internal use (point the MPI interface to the internal function).
Fix a typo in group_init.c

This commit was SVN r26118.
2012-03-08 21:57:45 +00:00
Jeff Squyres
359c575345 Fix a few missed cases with MPROBE and friends.
This commit was SVN r26116.
2012-03-08 19:43:08 +00:00
Jeff Squyres
91b80630aa Update MPROBE, IMPROBE, MRECV, IMRECV with the behavior described in
MPI-3 ticket 328:
https://svn.mpi-forum.org/trac/mpi-forum-web/ticket/328.  Add
MPI_MESSAGE_NO_PROC constant.

This commit was SVN r26115.
2012-03-08 13:27:01 +00:00
George Bosilca
af9b6f6161 Minor beautification.
This commit was SVN r26095.
2012-03-05 13:23:54 +00:00
Ralph Castain
da5f290cef During this initial deployment, output a more definitive error message when libs cannot load
This commit was SVN r26005.
2012-02-22 21:59:31 +00:00
Jeff Squyres
d595ec2ef2 Remove the use of all deprecated functions so that we don't induce
warnings about using deprecated functions in our C++ inline functions.

This commit was SVN r25994.
2012-02-21 21:52:23 +00:00
Jeff Squyres
5656efe85d Don't distribute these files; they're generated.
This commit was SVN r25977.
2012-02-21 00:31:04 +00:00
Ralph Castain
47c64ec837 Roll in Java bindings per telecon discussion. Man pages still under revision
This commit was SVN r25973.
2012-02-20 22:12:43 +00:00
Jeff Squyres
108799ea0e Fixes trac:2933: a bunch of C++ API corrections from Fujitsu. Custom
patch from the ticket, released under the BSD license.

This commit was SVN r25949.

The following Trac tickets were found above:
  Ticket 2933 --> https://svn.open-mpi.org/trac/ompi/ticket/2933
2012-02-17 11:42:51 +00:00
Jeff Squyres
0c6f4fbce5 Only access the status and message if the flag is true.
This commit was SVN r25936.
2012-02-15 20:16:51 +00:00
Ralph Castain
30ab3b2332 Ensure we don't segfault if comm_spawn_multiple fails as it returns a NULL pointer to the new communicator when that happens. Thanks to Yuki MATSUMOTO of Fujitsu for the patch.
cmr:v1.6

This commit was SVN r25886.
2012-02-09 15:59:49 +00:00
Jeff Squyres
982158b513 Add F90 binding for MPI_Comm_split_type
This commit was SVN r25877.
2012-02-07 17:40:49 +00:00
Jeff Squyres
f545e4c2b2 Make these scripts be executable
This commit was SVN r25873.
2012-02-07 16:27:01 +00:00
Jeff Squyres
631967759f Fix argument type.
This commit was SVN r25872.
2012-02-07 15:59:43 +00:00
Jeff Squyres
eb35cae681 Make the new Mprobe and friends functions be compiled in Fortran.
This commit was SVN r25871.
2012-02-07 15:58:58 +00:00
Jeff Squyres
092448f19e Doh! Waiting for the test compile to finish ''before'' committing
reduces the potential for silly typos like this.  :-(

This commit was SVN r25870.
2012-02-07 15:27:50 +00:00
Jeff Squyres
3c3994ede9 Ensure PMPI_Message_c2f and PMPI_Message_f2c are compiled.
This commit was SVN r25869.
2012-02-07 15:22:19 +00:00