ports/openmpi
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Ralph Castain
466cad6cb2 Update master to PMIx v4 
Retain ext3x for PMIx 3  compatibility
Get the blasted permissions correct on config files

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2018-09-13 08:24:17 -07:00
Gilles Gouaillardet
ff48e92864 coll/libnbc: fix NBC_Unpack() 
always initialize 'size'.

Only the a2a_sched_diss() alltoall algorithm is impacted,
and this algo is currently unused, so there is no need
to backport nor update the NEWS file for now.

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2018-09-13 10:55:29 +09:00
Ralph Castain
fb67b1703f
Merge pull request #5689 from rhc54/topic/psm2 
Silence warning of unused function
 2018-09-12 16:40:23 -07:00
Ralph Castain
853dc96c5d Silence warning of unused function 
Requires protection for HAVE___CLEAR_CACHE

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2018-09-12 15:03:59 -07:00
Jeff Squyres
78c1469f93
Merge pull request #5682 from selvintxavier/brcm_hcas 
Add support for different Broadcom HCAs
 2018-09-12 11:59:21 -04:00
Ralph Castain
a67b77cdfa
Merge pull request #5681 from ggouaillardet/topic/abort_after_finalize 
orte: send error messages to stderr.
 2018-09-12 07:48:06 -07:00
Ralph Castain
f10b69259e
Merge pull request #5676 from rhc54/topic/quiet 
Silence warning
 2018-09-12 06:11:45 -07:00
Selvin Xavier
a53a6f7650 Add support for different Broadcom HCAs 
Adds device ids of different Broadcom adapters from
BCM57XXX and BCM58XXX family of HCAs.

Signed-off-by: Selvin Xavier <selvin.xavier@broadcom.com>
 2018-09-12 02:22:34 -07:00
Gilles Gouaillardet
893270caee orte: send error messages to stderr. 
When a job terminates normally but with a non zero exit code,
display the error message to stderr.

Thanks Emre Brookes for the bug report.

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2018-09-12 17:03:55 +09:00
Ralph Castain
83ba589084 Silence warning 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2018-09-11 18:01:12 -07:00
Geoff Paulsen
b83ad04e4e
Merge pull request #5666 from hoopoepg/topic/missing-ucp-deps 
UCX: added missing UCX libs to UCX detection
 2018-09-11 16:32:26 -05:00
Sergey Oblomov
e735593bb1 UCX: added missing UCX libs to UCX detection 
- added libs to non-default UCX location branch

Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
 2018-09-11 19:06:22 +03:00
Sergey Oblomov
c982645a46 UCX: added missing UCX libs to UCX detection 
Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
 2018-09-11 11:43:40 +03:00
Nathan Hjelm
9a514c6794
Merge pull request #5647 from hjelmn/clear_cache 
patcher/base: improve instruction cache flush for aarch64
 2018-09-10 15:43:35 -06:00
Ralph Castain
a6aff8da41
Merge pull request #5664 from rhc54/topic/instant 
Remove the orte_enable_instant_on MCA param
 2018-09-10 10:10:40 -07:00
Ralph Castain
bc1d13ffbe Remove the orte_enable_instant_on MCA param 
We have adequate protection to ensure that we only utilize the PMIx
features related to "instant on" when they are available, so this param
is no longer required and causes confusion.

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2018-09-10 09:20:26 -07:00
KAWASHIMA Takahiro
ce49d20e8a
Merge pull request #5660 from kawashima-fj/pr/pcollreq-zero-count 
mpiext/pcollreq: Fix zero-count reduction
 2018-09-10 12:35:15 +09:00
KAWASHIMA Takahiro
69901a5156 mpiext/pcollreq: Fix zero-count reduction 
We need to return a persistent request.
`ompi_request_empty` is not a persistent request.

Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
 2018-09-10 11:19:07 +09:00
Jeff Squyres
a1b879d176
Merge pull request #5651 from jsquyres/pr/dont-let-openib-yell-about-no-nics 
btl/openib: don't complain about no NICs
 2018-09-07 15:00:24 -04:00
Howard Pritchard
dc02e54320
Merge pull request #5516 from thananon/ofi_send 
btl/ofi: Added 2 sided communication support.
 2018-09-06 18:39:23 -06:00
Jeff Squyres
098ec55e37 btl/openib: don't complain about no NICs 
Since openib is on its long, slow way out the door, don't let it
complain about not being able to find any NICs at run time.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2018-09-06 11:26:58 -07:00
Nathan Hjelm
1cdbceb095 patcher/base: improve instruction cache flush for aarch64 
This commit updates the patcher component to either use the
__clear_cache intrinsic or the correct assembly to flush the
instruction cache.

Fixes #5631

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2018-09-06 09:47:53 -06:00
Nathan Hjelm
5b9a24f13b
Merge pull request #5648 from hjelmn/btl_uct_fix 
btl/uct: ad missing opal_mem_hooks_unregister_release call
 2018-09-05 13:59:22 -06:00
Nathan Hjelm
36c206d2d6 btl/uct: add missing opal_mem_hooks_unregister_release call 
This commit fixes a bug when using the UCT btl with the UCX memory
hooks disabled. We were misssing a call to
opal_mem_hooks_unregister_release to remove the btl memory hook
callback.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2018-09-05 13:01:45 -06:00
Jeff Squyres
69f9723c7e
Merge pull request #5646 from jsquyres/pr/mca-base-var-followup 
MCA base var followup
 2018-09-05 14:00:45 -04:00
Jeff Squyres
4173ac6dd0 mca/base: enforce max string lengths 
Ensure that the project, framework, component, and variable names are
lower than max lengths.  This is a follow-on to
992a8e8297, per discussion on
https://github.com/open-mpi/ompi/pull/5642.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2018-09-05 08:42:00 -07:00
Gilles Gouaillardet
42b0e3bd61
Merge pull request #5494 from markalle/apply_romio314_patch_to_master 
apply romio314 patch to romio321
 2018-09-05 10:27:19 +09:00
Nathan Hjelm
d944e9f3ab
Merge pull request #5642 from bosilca/topic/less_mca_mem 
Use less memory for the MCA variable names.
 2018-09-04 16:12:57 -06:00
George Bosilca
992a8e8297
Use less memory for the MCA variable names. 
Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
 2018-08-31 11:36:40 +02:00
Jeff Squyres
a43a9a34c9
Merge pull request #5633 from jsquyres/pr/verbs-usnic-README-update 
README: Add note about --with-verbs-usnic
 2018-08-30 19:00:12 -04:00
Jeff Squyres
9a8b0d0e18 README: Add note about --with-verbs-usnic 
This option isn't needed on modern distros; add a note to README about
it.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2018-08-30 15:05:04 -07:00
Jeff Squyres
c427cac47a
Merge pull request #5632 from jsquyres/pr/verbs-usnic-configury-moar-strictness 
common/verbs-usnic: check that it will actually compile
 2018-08-30 17:43:28 -04:00
Jeff Squyres
05e5f61fe1 common/verbs-usnic: check that it will actually compile 
If someone specifies --with-verbs-usnic, actually do a configury check
to ensure that it will compile (vs. assuming that it will compile if
someone asks for it).

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2018-08-30 13:10:49 -07:00
Nathan Hjelm
1c89631db5
Merge pull request #5630 from hjelmn/osc_portals4_c99 
osc/portal: use c99 subobject naming to initialize module
 2018-08-30 09:20:55 -06:00
Gilles Gouaillardet
2707ef5909
Merge pull request #5624 from ggouaillardet/topic/misc_finalize_leaks 
Plug misc finalize leaks on finalize
 2018-08-30 23:33:42 +09:00
Gilles Gouaillardet
b79b37465c ompi/hook: plug a misc memory leak 
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2018-08-30 10:07:18 +09:00
Gilles Gouaillardet
316e4e38f4 mtl/psm2: fix a misc memory leak 
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2018-08-30 10:07:17 +09:00
Gilles Gouaillardet
fed33c1530 pml/ob1: plug a memory leak in mca_pml_ob1_component_fini() 
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2018-08-30 10:07:17 +09:00
Gilles Gouaillardet
d234caef74 ess/hnp: plug a memory leak in rte_finalize() 
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2018-08-30 10:07:17 +09:00
Gilles Gouaillardet
ad2c207a7e mpool/memkind: plug a memory leak in mca_mpool_memkind_close() 
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2018-08-30 10:07:17 +09:00
Gilles Gouaillardet
d0d399c9a9 ompi/info: plug memory leaks in ompi_mpiinfo_finalize() 
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2018-08-30 10:07:17 +09:00
Gilles Gouaillardet
7556dd0abb opal/util: plug a memory leak in the opal_infosubscriber_t destructor 
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2018-08-30 10:07:17 +09:00
Gilles Gouaillardet
aeddd2f249 pmix/pmix3x: plug a memory leak in external_register() 
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2018-08-30 10:07:16 +09:00
Gilles Gouaillardet
6e47c5708e pmix/base: plug a memory leak in opal_pmix_base_select() 
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2018-08-30 10:07:16 +09:00
Nathan Hjelm
7fdf887937 osc/portal: use c99 subobject naming to initialize module 
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2018-08-29 10:34:24 -06:00
Yossi Itigin
68206a5635
Merge pull request #5569 from hoopoepg/topic/optimize-blocked-calls 
PML/UCX: blocked calls optimizations
 2018-08-29 14:19:09 +03:00
Yossi Itigin
4bb6845888
Merge pull request #5570 from hoopoepg/topic/opal-mem-hooks-syno 
MCA/COMMON/UCX: added synonym to opal_mem_hook variable
 2018-08-29 14:16:33 +03:00
Nathan Hjelm
0d179026a4
Merge pull request #5623 from hjelmn/odls_alps_fix 
odls/alps: resolve hang when launching with mpirun on Crays
 2018-08-28 18:55:48 -06:00
Nathan Hjelm
98172163e6 odls/alps: resolve hang when launching with mpirun on Crays 
This commit removes some code that protected the odls/alps component
from closing alps file descriptors. For some unknown reason leaving
these file descriptors open causes can cause an orted to hang when
launching apps.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2018-08-28 16:24:56 -06:00
Jeff Squyres
151efa61eb
Merge pull request #5546 from bosilca/fix/128_atomics 
Fix the detection of 128 bits atomics.
 2018-08-28 14:55:14 -04:00