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Граф коммитов

7960 Коммитов

Автор SHA1 Сообщение Дата
Nathan Hjelm
e91084e20b Merge pull request #492 from hjelmn/subarray_fix
ompi/datatype: fix subarray datatype
2015-03-27 10:50:46 -06:00
Devendar Bureddy
71c28cea65 HCOLL: hcoll dte fixes
- hcoll currently do not support datatype with gaps around it (i.e dtsize !=
dtextent)
    - check for user defined Ops.
2015-03-25 16:04:11 +02:00
Nathan Hjelm
88072f9b8b ompi/datatype: fix subarray datatype
The subarray datatype was not packing/unpacking correctly. This was
leading to wrong results whenever the lb of the subarray datatype was
non-zero.

I tracked the issue to the use of ompi_datatype_create_resized. This
function simply duplicates the old datatype and sets the lb and
extent. This is unfortunately insufficent for the pack/unpack
functions which use the loop end first element offset NOT the lb. This
offset is 0 in the resized datatype. Once ompi_datatype_create_resized
has been fixed this commit should be reverted.

Fixes #380.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-03-24 14:33:10 -06:00
Nathan Hjelm
f588ad7af0 Merge pull request #485 from hjelmn/info_enums
ompi/info: add support for getting info key value based on variable enumerator
2015-03-23 11:43:22 -06:00
Nathan Hjelm
9299cd5cd7 ompi/info: add support for getting info key value based on variable
enumerator

This commit adds a function that will return an integer value for an
info key based on the value returned by a variable enumerator. This
feature should greatly simplify code using the info keys (osc for
example).

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-03-23 11:20:37 -06:00
Howard Pritchard
edf9e8ba8f mtl/psm: coverity fixes
Fix CIDS 1270176 - 1270179

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2015-03-18 11:02:01 -06:00
Nathan Hjelm
ccba8ce856 Merge pull request #457 from hjelmn/mpit_fixes
mca/base: fix bugs in framework deregistration/re-registration
2015-03-18 08:37:49 -06:00
Ralph Castain
0cfb4f29aa Silence compiler warning 2015-03-16 09:59:21 -07:00
Todd Kordenbrock
515d9e8cc9 mtl-portals4: fix compiler warnings 2015-03-12 20:34:04 -05:00
adrianreber
714d9aa67e Merge pull request #348 from adrianreber/topic/orte_cr_continue_like_restart
Topic/orte cr continue like restart
2015-03-12 14:54:02 +01:00
Alina Sklarevich
28586caecf MTL_MXM/PML_YALLA: fix coverity issues. 2015-03-12 11:49:22 +02:00
Howard Pritchard
da85d5fc0a Merge pull request #467 from hppritcha/topic/minor_fcoll_static_coverity_fix
fcoll/static: minor fix for coverity
2015-03-11 10:28:05 -06:00
Nathan Hjelm
ce6caab2a7 Merge pull request #463 from hjelmn/cuda_async
btl/openib: cuda: fix CUDA-aware support with async copy
2015-03-11 09:52:48 -06:00
Howard Pritchard
66fee3bd18 fcoll/static: minor fix for coverity
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2015-03-11 09:11:49 -06:00
Adrian Reber
c08e234af7 FT: fix compilation using --with-ft (5/5)
Enabling the FT code breaks compilation (again). This series
tries to fix the compiler errors. This is again only fixing
the compiler errors without any warranty that the result
might actually support FT again.

With the changes introduced in the previous patches in this series
some goto constructs for cleanup are no longer necessary and removed.
2015-03-11 14:23:33 +01:00
Adrian Reber
9b84fe45d3 FT: fix compilation using --with-ft (3/5)
Enabling the FT code breaks compilation (again). This series
tries to fix the compiler errors. This is again only fixing
the compiler errors without any warranty that the result
might actually support FT again.

Follow-up of 552c9ca5a0. This patch
implements the necessary changes in mentioned commit in the FT code.
2015-03-11 14:23:33 +01:00
Adrian Reber
1c5a8df724 FT: fix compilation using --with-ft (2/5)
Enabling the FT code breaks compilation (again). This series
tries to fix the compiler errors. This is again only fixing
the compiler errors without any warranty that the result
might actually support FT again.

The FT code used barrier mechanisms which have been removed
with aec5cd08bd. This patch replaces
all those different barriers with opal_pmix.fence(NULL, 0);
I am not sure this is completely correct but at least a starting
point for a review.
2015-03-11 14:23:33 +01:00
Adrian Reber
f45dd069bd FT: fix compilation using --with-ft (1/5)
Enabling the FT code breaks compilation (again). This series
tries to fix the compiler errors. This is again only fixing
the compiler errors without any warranty that the result
might actually support FT again.

This first patch moves orte_cr_continue_like_restart from ORTE
to opal_cr_continue_like_restart in OPAL. This only leaves three
calls from OPAL to ORTE in the FT code. As it is not yet 100%
clear how to handle these calls the code orte_sstore.set_attr()
has been #ifdef'd out for now.
2015-03-11 14:23:33 +01:00
Alina Sklarevich
f9a9b936a1 PML_YALLA: fix compilation warnings. 2015-03-11 10:58:54 +02:00
Nathan Hjelm
3d32dbd793 btl/openib: cuda: fix CUDA-aware support with async copy
This commit should resolve an issue seen with CUDA-aware support. The
problem came in with BTL 3.0. Before 3.0 the size of the copy was
stored in the incoming segment's des_remote_count field. This field
does not exist in BTL 3.0 so I stored the value in the
des_segment_count field. This caused problems with the cuda support
code. To fix the issue the endpoint pointer is now stored in the in
fragment's endpoint pointer which free's up the segment's des_cbdata
pointer for storing the transfer size.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-03-10 14:38:12 -06:00
Nathan Hjelm
d929137768 osc/pt2pt: need to unlock self before waiting for unlock acks
This commit fixes a bug in osc/pt2pt which causes MPI_Win_unlock_all
to hang. The problem was caused by code refactoring that moved the
unlock of the local process to after the loop that waits for unlock
acks. This will cause the code to loop forever waiting on the self
ack.

Fixes #444
2015-03-10 14:10:37 -06:00
Yohann Burette
d48a8ab8f0 mtl/ofi: Use fi_allocinfo(). 2015-03-10 12:50:55 -07:00
Jeff Squyres
2e8ee003b0 ofi: endpoint type hint moved to a sub-struct, BUFFERED went away
Update to match	new libfabric API/structure change.
2015-03-10 09:55:45 -07:00
Howard Pritchard
b73d566d57 Merge pull request #454 from hppritcha/topic/coverity_fixes
fcoll/dynamic: coverity fixes
2015-03-10 07:59:56 -06:00
Mike Dubman
6f91a007e1 Merge pull request #458 from yosefe/topic/pml-yalla-fix-segv
keep mxm context alive as long as pml_yalla component is open.
2015-03-10 13:38:14 +02:00
yosefe
976144dca7 keep mxm context alive as long as pml_yalla component is open.
pml_yalla_del_comm may be called after yalla module is finalized, which
leads to invalid memory access if mxm context is already destroyed in
this point.
2015-03-10 11:52:44 +02:00
Nathan Hjelm
005c6022e2 mca/base: fix bugs in framework deregistration/re-registration
There were a number of bugs in the framework/variable code that
affected deregistration:

 - Frameworks could be erroneously closed if seperately registered and
   opened then subsequently closed. This was a bug in the original
   design which only reference counted opens but not
   registrations. This would cause undefined behavior if
   MPI_T_finalize actually calls ompi_info_close_components as
   intended. Now both registrations and opens are reference counted
   and frameworks/components are not torn down until the matching
   number of close calls have been made.

 - group_find_by_name did not pass the invalidok flags down
   to mca_base_var_group_get_internal correctly.

 - Group deregistration caused the group to be completely reset. This
   does not match the behavior required by MPI_T as it could reduce
   the number of variables/subgroups in a group.

This commit also updates MPI_T_finalize to call
ompi_info_close_components as originally intended.

Closes #374

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-03-09 16:52:53 -06:00
Howard Pritchard
fba88360a8 fcoll/dynamic: more coverity fixes
Okay coverity seems to get one stuck in a loop where
by fixing one set of resource allocation problems, it
starts finding more.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2015-03-09 15:01:05 -07:00
Howard Pritchard
2d61a652c8 fcoll/dynamic: coverity fixes
okay, hopefully really fix CIDS 72325-72328, and 72330-72332.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2015-03-09 13:53:52 -07:00
Nathan Hjelm
0d80bfb391 Merge pull request #443 from hjelmn/mpit_31
Add new error code introduced in MPI-3.1.
2015-03-09 13:03:15 -06:00
Jeff Squyres
a026456bef (orte|ompi|oshmem)*info tools: convert to opal_dl interface
Noe that this commit removes option:lt_dladvise from the various
"info" tools output.  This technically breaks our CLI "ABI" because
we're not deprecating it / replacing it with an alias to some other
"into" tool output.

Although the dl/libltdl component contains an "have_lt_dladvise" MCA
var that contains the same information, the "option:lt_dladvise"
output from the various "info" tools is *not* an MCA var, and
therefore we can't alias it.  So it just has to die.
2015-03-09 08:18:13 -07:00
Jeff Squyres
c683500a29 debuggers: convert to opal_dl interface 2015-03-09 08:16:55 -07:00
Gilles Gouaillardet
6de973daae coll/sm: remove unused value
as reported by Coverity with CID 1269962
2015-03-09 17:31:32 +09:00
Gilles Gouaillardet
1896d4fba7 bcol/basesmuma: fix misc memory leak
as reported by Coverity with CID 715762
2015-03-09 17:22:25 +09:00
Gilles Gouaillardet
341bdd1fc3 ompi/group: refactor ompi_group_incl
and fixes CID 70478
2015-03-09 17:07:11 +09:00
Gilles Gouaillardet
9107bf5077 ompi/topo: fix misc errors
as reported by Coverity with CIDs 1041232, 1041234, 1041235
1269789 and 1269996
2015-03-09 15:22:22 +09:00
Gilles Gouaillardet
a9044945fe ompi/proc: correctly handle cutoff modex case
as reported by Coverity with CID 1196664
2015-03-09 14:34:28 +09:00
Gilles Gouaillardet
59f298a534 fs/base: securily use readlink
as reported by Coverity with CIDs 1287031 and 1287032
2015-03-09 11:20:51 +09:00
Howard Pritchard
209f002200 fcoll/static: fix an errant free
Got to excited about coverity and ended up generating
a new coverity error.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2015-03-06 13:12:53 -07:00
Howard Pritchard
4f4b99bbac fcoll/dynamic,static: coverity fixes
Fix some theoretical memory leaks reported by coverity.

Fixes CIDS 72332, 72328, 72332, 72138, 72139, 72140, 72364, 72365-72370
           72372-72374, 741354, 72143, 72375-83, 1027140, 1269903

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2015-03-06 11:05:23 -07:00
Gilles Gouaillardet
35c64af4b1 dpm: fix misc issues
as reported by Coverity with CIDs 71126 and 1269659
2015-03-06 16:20:24 +09:00
Gilles Gouaillardet
757b40e56a coll/tuned: remove dead code
as reported by Coverity with CID 1271638
that looks like a multiple paste error ...
2015-03-06 15:02:56 +09:00
Gilles Gouaillardet
f03d7dce17 ompio: fix deallocation sequence
as reported by Coverity with CID 1287034
2015-03-06 14:59:59 +09:00
George Bosilca
f758790d7a Allow TOPO modules to register their parameters when we do lazy
initialization.
2015-03-05 13:11:06 -05:00
George Bosilca
420ae98dfe Remove all unnecessary whitespaces and make sure we close the module
correctly.
2015-03-05 13:00:13 -05:00
Gilles Gouaillardet
d6ae0a5e05 sharedfp/sm: fix misc memory leaks
as reported by Coverity with CIDs 1196785, 1196787 and 1269896
2015-03-05 16:33:32 +09:00
Gilles Gouaillardet
5b2122381b ompio: fix misc memory leaks
as reported by Coverity with CIDs 72127, 72145, 72146, 72177, 72179,
72186, 731276, 731278, 1269888, 1269890
2015-03-05 16:22:19 +09:00
Gilles Gouaillardet
ceeb0844b6 dpm: fix misc memory leaks
as reported by Coverity with CIDs 1196737 and 1269850
2015-03-05 14:20:09 +09:00
Gilles Gouaillardet
e75b1e6435 fs/base: fix misc memory leak
as reported by Coverity with CID 72202
2015-03-05 14:20:08 +09:00
Gilles Gouaillardet
9f13425980 fbtl/posix: fix misc memory leaks
as reported by Coverity with CIDs 72125, 72126, 1269899 and 1269900
2015-03-05 14:20:08 +09:00