ports/openmpi
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Автор SHA1 Сообщение Дата
Ralph Castain
1e2019ce2a Revert "Update to sync with OMPI master and cleanup to build" 
This reverts commit cb55c88a8b7817d5891ff06a447ea190b0e77479.
 2016-11-22 15:03:20 -08:00
Ralph Castain
cb55c88a8b Update to sync with OMPI master and cleanup to build 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2016-11-22 14:24:54 -08:00
Gilles Gouaillardet
bf789762a7 fortran/use-mpi-tkr: fix MPI_Sizeof handling 
MPI_Sizeof related stuff has been moved to their own files.
Remove MPI_Sizeof from Fortran interfaces when it cannot be built
(e.g. stock gcc 4.8 on CentOS 7)

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-10-27 08:54:28 +09:00
Gilles Gouaillardet
1a16e68c26 fortran/use-mpi-trk: add PMPI_* interfaces in mpi module 
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-10-27 08:54:07 +09:00
Gilles Gouaillardet
8e26e78728 fortran/use-mpi-tkr: only build MPI_File support if requested 
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-10-27 08:54:07 +09:00
Gilles Gouaillardet
5543b19e9a fortran/use-mpi-tkr: rename mpi-f90-cptr-interfaces.F90 into mpi-f90-cptr-interfaces.h 
this file is meant to be included and not compiled, so use a consistent naming

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-10-27 08:54:07 +09:00
Gilles Gouaillardet
e2769e4343 fortran/use-mpi-ignore-tkr: fix typo in MPI_File_write_at_all_begin interface 2016-10-24 09:53:52 +09:00
Gilles Gouaillardet
e02dc1e637 fortran/use-mpi-ignore-trk: fix typo in MPI_File_read_ordered_begin interface 2016-10-24 09:53:52 +09:00
Joshua Hursey
f6f24a4f67 build: Custom libmpi(_FOO) name option in configure 
* Add a configure time option to rename libmpi(_FOO).*
   - `--with-libmpi-name=STRING`
 * This commit only impacts the installed libraries.
   Internal, temporary libraries have not been renamed to limit the
   scope of the patch to only what is needed.

For example:
```shell
shell$ ./configure --with-libmpi-name=wookie
...
shell$ find . -name "libmpi*"
shell$ find . -name "libwookie*"
./lib/libwookie.so.0.0.0
./lib/libwookie.so.0
./lib/libwookie.so
./lib/libwookie.la
./lib/libwookie_mpifh.so.0.0.0
./lib/libwookie_mpifh.so.0
./lib/libwookie_mpifh.so
./lib/libwookie_mpifh.la
./lib/libwookie_usempi.so.0.0.0
./lib/libwookie_usempi.so.0
./lib/libwookie_usempi.so
./lib/libwookie_usempi.la
shell$
```
 2016-09-29 21:47:24 -05:00
Nathan Hjelm
8bdcb40dc4 ompi/fortran: fix typos in request RMA bindings 
This commit fixes typos on the C side of the request-based RMA binding. We
were not returning the request on success but on failure. Thanks to
@alazzaro for reporting and @ggouaillardet, and @vondele for tracking
this down.

Fixes part of open-mpi/ompi#1869

Signed-off-by: Nathan Hjelm <hjelmn@me.com>
 2016-07-18 13:46:28 -06:00
Ralph Castain
ee56d9dc1a Shorten the session directory name as some OS's are now providing unusually long temp directory names, causing us to overflow the sockaddr field 2016-07-05 14:59:50 -07:00
Aurélien Bouteiller
8344d00418 use-mpi extensions do not have a .la lib, so the fortran module should not depend on them. 2016-05-03 11:54:35 -04:00
Gilles Gouaillardet
01c90d4e71 fortran/mpif-h: fix *_create_keyval_f 
correctly handle out parameter *_keyval when OMPI_SIZEOF_FORTRAN_INTEGER > SIZEOF_INT
 2016-04-27 13:34:32 +09:00
Gilles Gouaillardet
178dde6a20 fortran/mpif-h: fix MPI_Win_shared_query 
correctly handle out parameter disp_unit when OMPI_SIZEOF_FORTRAN_INTEGER > SIZEOF_INT
 2016-04-27 11:22:09 +09:00
Gilles Gouaillardet
7f59d2a8c7 fortran/mpif-h: fix MPI_Win_free_keyval 
initialize inout parameter when OMPI_SIZEOF_FORTRAN_INTEGER > SIZEOF_INT
 2016-04-27 10:46:14 +09:00
Nathan Hjelm
60a3eb12ac comm_spawn_multiple_f: fix coverity issue 
Fix CID 1327338: Resource leak (RESOURCE_LEAK):

Confirmed that the c_info array was being leaked. Free the array
before returning.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2016-03-11 13:07:01 -07:00
KAWASHIMA Takahiro
e854404570 fortran: Change the line order of #pragma 
No code change.
These lines were introduced in my recent commit 17d32ac.
I had a editing mistake and the order is different from
other lines/files.
 2016-04-15 12:49:03 +09:00
Jeff Squyres
4566286b9a Merge pull request #1538 from kawashima-fj/pr/fortran-binding-fix 
fortran: Fix many Fortran binding bugs
 2016-04-14 17:18:59 -04:00
KAWASHIMA Takahiro
17d32acbb6 fortran: Add missing (P)MPI_Alloc_mem_cptr_{f,f08} symbols 
This commit adds the following symbols

  MPI_Alloc_mem_cptr_f
  MPI_Alloc_mem_cptr_f08
  PMPI_Alloc_mem_cptr_f
  PMPI_Alloc_mem_cptr_f08

These are implemented in the same way as other `_cptr` routines.
 2016-04-12 22:40:58 +09:00
KAWASHIMA Takahiro
d48c8525ed fortran: Fix incorrect weak symbol names 2016-04-12 22:16:32 +09:00
KAWASHIMA Takahiro
5d32a601ff fortran: Add missing interfaces (part 2) 2016-04-12 22:06:35 +09:00
KAWASHIMA Takahiro
6f09d53e34 fortran: Add missing interfaces 2016-04-12 21:44:33 +09:00
KAWASHIMA Takahiro
f3b9a49ad1 fortran: Add missing PMPI interfaces 2016-04-12 20:55:41 +09:00
KAWASHIMA Takahiro
b6cb0bc257 fortran: Fix an incorrect interface name 2016-04-12 20:48:08 +09:00
KAWASHIMA Takahiro
96e93a9c5f fortran: Sort declared subroutins in alphabetical order 
And insert necessary empty lines and remove unnecessary empty lines.

No code change.
 2016-04-12 20:36:46 +09:00
KAWASHIMA Takahiro
334c63cf0a fortran: Change subroutine declaration order 
Same order for `comm`, `type`, and `win`.

No code change.
 2016-04-12 20:10:15 +09:00
KAWASHIMA Takahiro
10c11ff5b5 fortran: Add missing MPI_DUP_FN subroutine 
Though the `MPI_DUP_FN` subroutine is depricated, it is not yet removed
as of MPI-3.1.
 2016-04-12 20:06:50 +09:00
KAWASHIMA Takahiro
d3d6386578 mpi/forran: Support MPI_IN_PLACE on (I)ALLTOALLW and (I)EXSCAN 
`MPI_IN_PLACE` support for `MPI_ALLTOALLW` and `MPI_EXSCAN` was
added in MPI-2.2 but it was missed in OMPI Fortran binding code.
 2016-04-11 20:38:28 +09:00
Jeff Squyres
7bc62e8f4c Merge pull request #1356 from hjelmn/get_address 
Fix MPI_Get_address (MPI_BOTTOM, ...)
 2016-02-13 08:27:18 -05:00
Nathan Hjelm
064a67f5b9 Fix MPI_Get_address (MPI_BOTTOM, ...) 
Nowhere in the standard does it say that it is invalid to pass
MPI_BOTTOM to MPI_Get_address yet we were returning an error. This
commit removes the error check on NULL == location.

Fixes open-mpi/ompi#1355.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2016-02-12 16:34:21 -07:00
Gilles Gouaillardet
cda094afc7 mpi_f08: correctly implements MPI_{COMM,TYPE,WIN}_{DUP,NULL_{COPY,DELETE}}_FN 
Fixes open-mpi/ompi#1323
 2016-02-02 13:38:01 +09:00
Gilles Gouaillardet
728a97c558 use-mpi-f08: remove duplicates from Makefile.am 2016-02-02 13:33:07 +09:00
Gilles Gouaillardet
704f14f91e f08: do not BIND(C) to subroutines with LOGICAL parameters 
Thanks Paul Romano for reporting this issue.
 2016-01-26 13:56:24 +09:00
Jeff Squyres
96f94f8228 fortran: whitelist deliberate common symbols 
The Fortran library has a number of common symbols that are
deliberate, so whitelist them.
 2016-01-16 03:53:14 -08:00
Gilles Gouaillardet
26b2ed1069 fortran: add missing MPI_xxx_DUP_FN bindings in use-mpi-tkr 
- MPI_COMM_DUP_FN
- MPI_TYPE_DUP_FN
- MPI_WIN_DUP_FN
 2015-12-07 09:10:48 +09:00
KAWASHIMA Takahiro
384f4b51d1 fortran: Fix: missing dimension(*) in (I)NEIGHBOR_ALLTOALLW. 2015-11-04 10:38:25 +09:00
KAWASHIMA Takahiro
107c0073dd fortran: Fix: MPI_UNWEIGHTED and MPI_WEIGHTS_EMPTY should be arrays. 
Without this modification, gfortran throw the following error
if these variables are used for `MPI_DIST_GRAPH_CREATE_ADJACENT` or
`MPI_DIST_GRAPH_CREATE_ADJACENT`.

  Error: There is no specific subroutine for the generic
  'mpi_dist_graph_create_adjacent' at (1)
 2015-11-04 10:38:25 +09:00
KAWASHIMA Takahiro
d5e1f40a1e fortran: Fix: info should be an integer parameter. 2015-11-04 10:38:24 +09:00
Gilles Gouaillardet
1105634ca1 mpi_f08: fix MPI_WIN_{ATTACH,DETACH} bindings 
fixes INTENT from open-mpi/ompi@9600e2bc63

Thanks Jeff for pointing this !
 2015-10-26 10:02:45 +09:00
KAWASHIMA Takahiro
66a8bc9e45 fortran/mpif-h: Insert missing weak symbols & Fix incorrect symbol names. 2015-10-15 11:58:41 +09:00
Jeff Squyres
2b9c9f3093 Fortran: add missing MPI_AINT in mpi_f08 module 2015-10-14 17:32:01 -07:00
Gilles Gouaillardet
291a464efb configury: remove the --enable-mpi-profiling option 
and directly call the PMPI_* symbols from C and Fortran bindings
 2015-10-13 08:52:35 +09:00
Gilles Gouaillardet
40b57ff347 fortran: only generate the correct symbol based on the compiler mangling. 2015-10-13 08:52:03 +09:00
Gilles Gouaillardet
53b952dc2b oshmem: invoke the C PMPI_* subroutines instead of the MPI_* ones 
when profiling is built.
This prevents oshmem subroutines from being wrapped twice by third
party tools (e.g. once in oshmem and once in MPI)
see discussion starting at http://www.open-mpi.org/community/lists/devel/2015/08/17842.php

Thanks to Bert Wesarg for bringing this to our attention
 2015-10-13 08:52:03 +09:00
Gilles Gouaillardet
16d65a2762 fortran/mpif-h: invoke the C PMPI_* subroutines instead of the MPI_* ones 
when profiling is built.
This prevents Fortran subroutines from being wrapped twice by third
party tools (e.g. once in Fortran and once in C)
see discussion starting at http://www.open-mpi.org/community/lists/devel/2015/08/17842.php
 2015-10-13 08:52:02 +09:00
Jeff Squyres
596557e61b Fortran: update a comment 
Split the list of subroutines into cases #1 and #2, just for clarity.
 2015-08-31 03:10:09 -07:00
Zhi Ming Wang
c8d4751ae6 Correct the wrong "Name Binding" of functions 2015-08-28 03:28:09 -04:00
Nathan Hjelm
f451876058 Merge pull request #825 from hjelmn/white_space_purge 
periodic trailing whitespace purge
 2015-08-25 19:23:52 -06:00
Jeff Squyres
2cfdeff38d Fortran: these lines should not be commented out 2015-08-25 07:13:52 -07:00
Jeff Squyres
42a761e052 Fortran: remove dead Makefile.am code 2015-08-25 07:13:34 -07:00