ports/openmpi
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Автор SHA1 Сообщение Дата
Ralph Castain
1e2019ce2a Revert "Update to sync with OMPI master and cleanup to build" 
This reverts commit cb55c88a8b7817d5891ff06a447ea190b0e77479.
 2016-11-22 15:03:20 -08:00
Ralph Castain
cb55c88a8b Update to sync with OMPI master and cleanup to build 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2016-11-22 14:24:54 -08:00
Nathan Hjelm
156ce6af21 periodic whitespace purge 
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2015-08-24 09:32:33 -06:00
Nathaniel Graham
97422de7a8 Code cleanup 
Removing the ArrayList import which is no longer needed.
 2015-08-20 12:47:01 -06:00
Nathaniel Graham
d363b5d832 Java garbage collection bugfix 
This pull request adds an arraylist of type Buffer to
the Request class.  Whenever a request object is created
that has associated buffers, the buffers should be added
to this array list so the java garbage collector does
not dispose of the buffers prematurely.

This is a more robust expansion on the idea first proposed by
@ggouaillardet

Fixes #369

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-08-19 17:45:26 -06:00
Nathaniel Graham
8f4c16da27 Java null handle bugfix 
A helper method in Request.java could cause a crash
if the request array that was passed contained nulls.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-08-10 15:54:36 -06:00
Nathaniel Graham
8fcc317a57 Add explicit implementation of Cloneable 
Added Cloneable to the implemented interface list as per
Coverity suggestion.  The required methods were already
implemented, but it was not explicitly stated.  This is
an intent revealing change.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-08-07 12:16:06 -06:00
Howard Pritchard
36d7855280 Merge pull request #763 from nrgraham23/status_x_java_bindings 
Status x java bindings
 2015-08-03 09:26:16 -06:00
Nathaniel Graham
57b95fff2e Commenting fixes for Datatype.java 
Some of the @code tags were incorrect.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-30 15:17:55 -06:00
Nathaniel Graham
2fecb06059 Status X Functons 
Includes java bindings for MPI_GET_ELEMENTS_X and
MPI_STATUS_SET_ELEMENTS_X.  This PR also adds the
Count object which represents MPI_Count.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-30 15:00:13 -06:00
Howard Pritchard
ac4197fb1b Merge pull request #760 from nrgraham23/request_get_status_java 
Java binding for MPI_REQUEST_GET_STATUS
 2015-07-30 13:57:06 -06:00
Howard Pritchard
ea6f5b31fd Merge pull request #749 from nrgraham23/additional_comm_java_bindings 
Additional java bindings for the Comm class
 2015-07-29 16:17:54 -06:00
Nathaniel Graham
9b5786d954 Java binding for MPI_REQUEST_GET_STATUS 
This adds the java binding for MPI_REQUEST_GET_STATUS.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-29 12:04:46 -06:00
Nathaniel Graham
efe69c89a7 Java bindings for Status methods 
Includes java bindings for the MPI_STATUS_SET_ELEMENTS and
MPI_STATUS_SET_CANCELLED.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-29 09:47:03 -06:00
Nathaniel Graham
59c43f4669 Additional java bindings for the Comm class 
Added bindings for MPI_COMM_CREATE_GROUP and MPI_COMM_DUP_WITH_INFO.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-24 16:14:35 -06:00
Nathaniel Graham
f87c41e926 Fix a compile issue in MPI.java 
A conflict was not fully resolved in the previous merge.  This
fixes the issue that was created.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-24 11:54:52 -06:00
Nathaniel Graham
0d7a38552e Formatting fixes for Java files. 
Fixed tab indenting as well as some of the block comments
at the top of a few of the files.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-24 11:02:13 -06:00
Howard Pritchard
5f14273e32 Merge pull request #743 from nrgraham23/java_win_name_bindings 
Java bindings for window name get and set
 2015-07-24 10:53:14 -06:00
Nathaniel Graham
2a156a1c2e Java bindings for window name get and set 
Includes bindings for MPI_WIN_GET_NAME and MPI_WIN_SET_NAME.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-23 18:01:19 -06:00
Nathaniel Graham
a1b47a333a Java Environment Variable Bindings 
Added the bindings for MPI_GET_VERSION and MPI_GET_LIBRARY_VERSION.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-23 14:52:01 -06:00
Howard Pritchard
967907fea4 Merge pull request #731 from nrgraham23/alltoallw_functions 
Alltoallw functions
 2015-07-22 12:21:01 -06:00
Nathaniel Graham
1197d2a893 Adding missed copyrights. 
I did not add the LANL copyrights to the files I touched
while fixing the javadoc errors.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-22 11:04:41 -06:00
Nathaniel Graham
11e1f09c25 White space fixes 
Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-21 16:39:59 -06:00
Nathaniel Graham
7548e342dd Java bindings for alltoallw functions. 
Includes bindings for MPI_ALLTOALLW and MPI_IALLTOALLW.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-21 16:29:22 -06:00
Nathaniel Graham
6bca7486c5 Added suppression statements. 
There are a few places where adding the @param for the variable
javadoc wants does not make sense, so I added suppression statements
in those areas.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-10 16:04:22 -06:00
Nathaniel Graham
580251e96a Fixes for javadoc warnings. 
Added missings @params and @throws as well as adding definitions for the @throws tags.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-10 12:59:45 -06:00
Nathaniel Graham
7f6d141bd6 More one sided java bindings. 
Bindings for the MPI_WIN_FLUSH_LOCAL, MPI_WIN_FLUSH_LOCAL_ALL, MPI_WIN_ALLOCATE, MPI_WIN_ALLOCATE_SHARED, and MPI_COMM_SPLIT_TYPE.  Also added several necessary constants.

Signed-off-by: Nathaniel Graham ngraham@lanl.gov
 2015-07-10 11:40:18 -06:00
Nathaniel Graham
26c528a627 Copyright additions 
Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-07 16:14:21 -06:00
Howard Pritchard
68c69d07ff add copyrights to changed java related files 
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2015-07-07 16:10:58 -06:00
Nathaniel Graham
982a232955 Additional Java Bindings 
Java bindings for the following functions: MPI_RACCUMULATE, MPI_GET_ACCUMULATE, MPI_RGET_ACCUMULATE, MPI_WIN_LOCK_ALL, MPI_WIN_UNLOCK_ALL, MPI_WIN_SYNC, MPI_WIN_FLUSH, MPI_WIN_FLUSH_ALL, MPI_COMPARE_AND_SWAP, and MPI_FETCH_AND_OP.  Also includes Java bindings for the Operations MPI_REPLACE and MPI_NO_OP.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-07 16:04:17 -06:00
Nathaniel Graham
bb5699e912 ompi/java: add MPI_Rget and MPI_Rput java bindings 
Wrote tests for ompi tests, but will commit later.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-06-30 12:05:59 -06:00
Gilles Gouaillardet
e0dd9bd2e7 Fix java bindings disaster 
that commit fixes :
- open-mpi/ompi@224f97b009
- open-mpi/ompi@ade7de549c
- open-mpi/ompi@0836344673
- open-mpi/ompi@7e0581c853
- open-mpi/ompi@d948a43993
 2015-06-29 09:51:36 +09:00
Gilles Gouaillardet
d948a43993 java: fix typo in MPI_Win_attach binding 2015-06-28 09:27:19 +09:00
Gilles Gouaillardet
7e0581c853 MPI_Win_{get,set}_info : add Java bindings 2015-06-26 15:10:15 +09:00
Gilles Gouaillardet
0836344673 MPI_Win_{attach,detach} : add Java bindings 2015-06-26 15:10:14 +09:00
Gilles Gouaillardet
ade7de549c MPI_Win_create_dynamic : add Java bindings 2015-06-26 15:10:14 +09:00
Ralph Castain
869041f770 Purge whitespace from the repo 2015-06-23 20:59:57 -07:00
Oscar Vega-Gisbert
c7b229f03e Java - slice methods: set buffer limit to its capacity before change its position 
This commit was SVN r31943.
 2014-06-03 21:32:27 +00:00
Oscar Vega-Gisbert
cc219218a7 Java: update javadoc's install locations 
This commit was SVN r31914.
 2014-06-01 15:40:14 +00:00
Oscar Vega-Gisbert
5a21790caa Java: improve access to Java arrays. 
This commit was SVN r31391.
 2014-04-14 21:29:13 +00:00
Oscar Vega-Gisbert
3be348e34a Java: create an MCA parameter: ompi_mpi_java_eager 
This commit was SVN r31301.
 2014-04-01 20:57:12 +00:00
Oscar Vega-Gisbert
3ef08328e7 Java - Info, Datatype: it is recommended to use dup() instead of clone() 
This commit was SVN r31300.
 2014-03-31 21:30:23 +00:00
Oscar Vega-Gisbert
aa3e2f7afd New Java method in Comm: iDup 
This commit was SVN r31299.
 2014-03-31 21:15:26 +00:00
Oscar Vega-Gisbert
c9e6f09af1 Java: neighborhood collective communications 
This commit was SVN r31296.
 2014-03-30 19:55:56 +00:00
Oscar Vega-Gisbert
0e177597c3 Java: Comm.set/getInfo 
This commit was SVN r31289.
 2014-03-29 18:57:51 +00:00
Oscar Vega-Gisbert
845818de59 Avoid use Status member in Request. 
This commit was SVN r31287.
 2014-03-29 18:13:38 +00:00
Jeff Squyres
173c046617 build: add Automake-like silent/verbose macros for "ln -s ..." operations 
Also, since I put some of the macros for these silent/verbose rules up
in the top-level Makefile.man-page-rules file, I renamed it to
Makefile.ompi-rules.

I've had this sitting around for a while; now seems like as good a
time as any to commit it.

This commit was SVN r31271.
 2014-03-28 18:24:32 +00:00
Oscar Vega-Gisbert
cc511d0efc Avoid use Status member in Comm, Message and File. 
This commit was SVN r31198.
 2014-03-24 22:28:30 +00:00
Oscar Vega-Gisbert
4d7be5b4a4 Java: send MPI_Op handle as parameter to C side 
This commit was SVN r30965.
 2014-03-08 20:29:50 +00:00
Jeff Squyres
baf21ab446 Fix DESTDIR installs for javadocs 
Thanks to Orion Poplawski for noticing the issue
(http://www.open-mpi.org/community/lists/devel/2014/03/14263.php).

This commit was SVN r30908.
 2014-03-03 16:26:18 +00:00