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Граф коммитов

8059 Коммитов

Автор SHA1 Сообщение Дата
Gilles Gouaillardet
85c45e2275 pml/ob1: fix mca_pml_ob1_recv_request_put_frag(...) in heterogeneous mode 2015-05-22 15:48:45 +09:00
Nathan Hjelm
c540a9e59a Merge pull request #582 from hjelmn/mca_var_file_fix
mca/base: fix source file name bug for synonyms
2015-05-21 11:34:12 -06:00
Nathan Hjelm
757c021951 Fix coverity ID 1270164
The sargs array and its elements were malloced but not freed. Note
that strings passed to NewStringUTF are copied into Java's heap and it
is the callers responsibility to free the original string.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-05-21 10:15:10 -06:00
Nathan Hjelm
ce48eabd84 pml/ob1: use c99 flexible array members instead of size 1 arrays
This commit updates several ob1 structures to take advantage of C99's
flexible array member.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-05-20 10:31:35 -06:00
Gilles Gouaillardet
b6c67e051d io/ompio: fix misc memory leaks
as reported by Coverity with CIDs 72147-72149,72187,72188,731274,731275,741356,
1269889,1269893,1271535 and 1269872
2015-05-20 17:19:39 +09:00
Gilles Gouaillardet
c05b271c68 man: fix a trivial typo in MPI_Neighbor_allgather.3in 2015-05-15 16:02:01 +09:00
Gilles Gouaillardet
1488e82efd osc/pt2pt: enable heterogeneous support 2015-05-14 16:42:48 +09:00
Todd Kordenbrock
c42e277385 mtl-portals4: thread multiple updates
When activating short receive blocks on the overflow list, remove
the PTL_ME_EVENT_LINK_DISABLE flag so the event gets generated.
Without PTL_EVENT_LINK, the block status can't reach the activated
state.

Replace #ifdef with #if for Open MPI configure booleans, because
Open MPI configure booleans are always defined and the value must
be checked.
2015-05-13 17:06:18 -05:00
Yohann Burette
27f1884cf8 mtl/ofi: Reworked header files. Added compat to ease maintenance. 2015-05-12 15:47:50 -07:00
rhc54
b59fa14004 Merge pull request #583 from rhc54/topic/mallocwarnings
Silence malloc(0) warnings reported by Lisandro
2015-05-12 13:37:38 -07:00
Ralph Castain
9a70765f27 Silence malloc(0) warnings reported by Lisandro 2015-05-12 12:38:58 -07:00
Nathan Hjelm
427aebbaca Fix cuda support MCA variables
This commit fixes some issues with the cuda support parameters. There
were a couple of duplicate registrations and an incorrect synonym (one
variable was made a synonym of mpi_preconnect_mpi).

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-05-12 09:52:51 -06:00
Ryan Grant
bbeaf41a52 Merge pull request #580 from tkordenbrock/topic/mtl.add.status.to.short.recv.blocks
mtl-portals4: add status to short recv blocks to coordinate out of or…
2015-05-11 13:44:45 -06:00
Ryan Grant
265682bdb9 Merge pull request #581 from tkordenbrock/topic/remove.overlapping.multiMD.code
portals4: use a single Memory Descriptor to cover all of memory
2015-05-11 13:20:32 -06:00
George Bosilca
78f5f0f8a9 Show the name of the collective that failed to get initialized. 2015-05-11 15:10:37 -04:00
Todd Kordenbrock
9df163f116 portals4: use a single Memory Descriptor to cover all of memory
In days past, some implementations of Portals4 could not cover all
of memory with a single Memory Descriptor so multiple large
overlapping Memory Descriptors were created.  Because none of the
current implementations have this limitation (and no future
implementations should either), this commit removes the overlapping
Memory Descriptors code.
2015-05-11 11:49:41 -05:00
Todd Kordenbrock
074583060d mtl-portals4: add status to short recv blocks to coordinate out of order events
If OMPI is initialized as thread multiple, then it is possible for
Portals events to be processed out of order by different threads.
Out of order events could lead to reactivation of the block
(PTL_EVENT_AUTO_FREE) before the block is removed from the active
list (PTL_EVENT_AUTO_UNLINK).  This commit adds a status field to
ompi_mtl_portals4_recv_short_block_t that coordinates these events.
2015-05-11 11:48:25 -05:00
Gilles Gouaillardet
650289bc33 romio314: update one more romio->romio314 name
Also missed this in open-mpi/ompi@db257cdbc0.
2015-05-08 18:26:33 +09:00
Ralph Castain
6e95bcd583 Fix typo in oob_tcp.c when IPV6 enabled. Cleanup a few other warnings, including a type in coll_sm that prevented that component from registering its MCA params! 2015-05-07 21:05:08 -07:00
Gilles Gouaillardet
f1258c3b6c ompi/errhandler: make most ompi_err_* variables static
Thanks @hjelmn for pointing this !
2015-05-08 10:11:59 +09:00
Nathan Hjelm
f0e650fef5 Rename internal error code variables in errcode-internal.c
The renamed variables used the same identifiers as variables in
errcode.c. To avoid confusion rename the variables to end in _intern.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-05-08 10:11:59 +09:00
Gilles Gouaillardet
9d56b85b55 initialize common symbols from ompi 2015-05-08 10:11:58 +09:00
Gilles Gouaillardet
dd572a0838 Fix --with-fortran=... logic 2015-05-08 09:23:55 +09:00
Gilles Gouaillardet
ab148e4e0c romio314: update one more romio->romio314 name
Also missed this in open-mpi/ompi@db257cdbc0.
2015-05-08 09:12:22 +09:00
Jeff Squyres
b3d89cf7b0 romio314: update one more romio->romio314 name
Missed this in db257cdbc0.
2015-05-07 09:40:45 -07:00
George Bosilca
3af8dfd3e2 Fix a overwrite of the args buffer identified by Lisandro Dalcin. 2015-05-07 09:50:39 -04:00
Jeff Squyres
691b4ec1e5 romio314: whitespace cleanup
No code changes
2015-05-05 06:23:59 -07:00
Jeff Squyres
db257cdbc0 romio314: adhere to the prefix rule
Rename all files and symbols from "io_romio" to "io_romio314".  This
fixes --disable-dlopen builds (because they were missing
the mca_io_romio314_component symbol).
2015-05-05 06:23:59 -07:00
Devendar Bureddy
88eb1fa936 HCOLL: refactoring hcoll_init 2015-05-04 22:03:36 +03:00
Jeff Squyres
8127c24f30 romio314/Makefile.am: whitespace cleanup
No code changes.
2015-05-04 07:20:11 -07:00
Jeff Squyres
332bca7183 romio314/Makefile.am: name the component library properly 2015-05-04 07:20:11 -07:00
Howard Pritchard
74089f5e3a Merge pull request #558 from ggouaillardet/refresh/romio314
Refresh/romio314
2015-05-01 14:23:43 -06:00
Gilles Gouaillardet
ef4b6203a4 Correctly unpack datatype.
Alignment requirements were relaxed in open-mpi/ompi@33a3ace874
so correctly handle this when unpacking a datatype.
2015-05-01 17:08:15 +09:00
Gilles Gouaillardet
34128c1cad mca_topo_base_dist_graph_neighbors: do not fail if legitimate parameters are provided.
Per the MPI 3.0 standard (chapter 7, page 310) :
"If maxindegree or maxoutdegree is smaller than the numbers returned by
MPI_DIST_GRAPH_NEIGHBOR_COUNT, then only the first part of the full list is returned."
2015-05-01 13:31:05 +09:00
Gilles Gouaillardet
96e3cbe8fc Remove an incorrect assert.
Alignment requirements were relaxed in open-mpi/ompi@33a3ace874
and made a previous alignment check incorrect.
2015-05-01 12:53:12 +09:00
George Bosilca
33a3ace874 Minimize the alignments. We only do it when we need to pack
data that must be aligned (aka the displacement). All other
cases do not require special alignments, and are treated
normally.
Fix the comment regarding the alignment requirements.
2015-04-30 22:06:50 -04:00
George Bosilca
015d3f56cf Fix the INDEXED_BLOCK issue identified by IBM. 2015-04-30 14:43:19 -04:00
Gilles Gouaillardet
6b3126e69e ROMIO 3.1.4 refresh: add refresh notes 2015-04-30 19:02:20 +09:00
Gilles Gouaillardet
e1b6ab4f1d ROMIO 3.1.4 refresh: remove old romio 2015-04-30 19:01:23 +09:00
Gilles Gouaillardet
85e77079b4 ROMIO 3.1.4 refresh: use romio from mpich 3.1.4 2015-04-30 19:00:50 +09:00
Gilles Gouaillardet
92f6c7c1e2 ROMIO 3.1.4 refresh: apply post romio-3.1.4 patches 2015-04-30 18:56:53 +09:00
Gilles Gouaillardet
6400bc75ab ROMIO 3.1.4 refresh: patch romio for Open MPI 2015-04-30 18:53:55 +09:00
Gilles Gouaillardet
eacd434a02 ROMIO 3.1.4 refresh: import romio from mpich 3.1.4 tarball 2015-04-30 18:53:03 +09:00
Gilles Gouaillardet
e2e91142d5 ROMIO 3.1.4 refresh: prepare new romio directory 2015-04-30 18:52:22 +09:00
Gilles Gouaillardet
1ee58af8f5 update ROMIO .gitignore 2015-04-30 18:49:53 +09:00
Gilles Gouaillardet
697a866b6e ddt: correctly align next datatype description
This bug can be evidenced by the test/datatype/ddt_pack
test case on sparc architecture.
2015-04-30 15:04:54 +09:00
Ryan Grant
6ab91a6781 Merge pull request #561 from tkordenbrock/topic/mtl.fix.datatype.overflow
mtl-portals4: fix datatype overflow in ompi_mtl_portals4_long_isend()
2015-04-28 15:15:59 -06:00
Ryan Grant
cc3da91700 Merge pull request #562 from tkordenbrock/topic/mtl.expand.source.bits.to.24
mtl-portals4: expand the source field of the match bits to 24 bits
2015-04-28 14:31:06 -06:00
Rolf vandeVaart
91a8ec52ca Fix possible unintialized warnings 2015-04-28 16:25:35 -04:00
Todd Kordenbrock
8a4616f724 mtl-portals4: fix datatype overflow in ompi_mtl_portals4_long_isend()
The length parameter of ompi_mtl_portals4_long_isend() was declared
as "int", which may not be big enough depending on the platform and
compiler options used.  This commit changes the type to size_t to
prevent overflow.
2015-04-28 14:40:25 -05:00