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29671 Коммитов

Автор SHA1 Сообщение Дата
Howard Pritchard
b46e15535a orte: shutdown
be more careful about closing framewworks as part of
orte_finalize.  Owing to recent restructuring in opal to handle
finalize in a more general fashion, the missing framework
closes were causing meltdowns as the mca vars subsystem
was cleaning itself up.

This problem was recently reported by Siegmar:

https://www.mail-archive.com/users@lists.open-mpi.org//msg32946.html

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2019-01-04 11:04:13 -07:00
Jeff Squyres
0dc0d77b12
Merge pull request #6237 from hppritcha/topic/fix_admistrative_typo
CONTRIBUTING: fix a spelling error
2019-01-03 10:16:26 -05:00
Howard Pritchard
ee26ed9e8f
Merge pull request #6214 from heasterday/topic/fixmpool
Update mpool_hugepage_component.c
2019-01-02 16:24:39 -07:00
Ralph Castain
8429f5bcfe
Merge pull request #6238 from rhc54/topic/rmaps
Correct parsing of ppr directives
2019-01-02 14:55:01 -08:00
Ralph Castain
b19e5edf76 Correct parsing of ppr directives
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2019-01-02 09:03:13 -08:00
Howard Pritchard
7d8a363306 CONTRIBUTING: fix a spelling error
As pointed out in issue #6186 we have some challenges with
English spelling.  Fixing title in the wiki page resulted
in it being renamed.  So fix links to the now correctly
spelled title.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2019-01-02 09:53:06 -07:00
Yossi Itigin
00fbb4cc7e
Merge pull request #6234 from yosefe/topic/scoll-basic-fix-zero-size-collect
oshmem/scoll: fix shmem_collect32/64 for zero-size length
2019-01-02 12:13:48 +02:00
Yossi Itigin
939162ed33 oshmem/scoll: fix shmem_collect32/64 for zero-size length
Fixes scoll_basic failures with shmem_verifier, caused by recent changes
in handling of zero-size collectives.

- Check for zero-size length only for fixed size collect (shmem_fcollect),
  but not for variable-size collect (shmem_collect)
- Add 'nlong_type' parameter to internal broadcast function, to indicate
  whether the 'nlong' parameter is valid on non-root PEs, since it's
  used by shmem_collect algorithm. Before this change, some components
  assumed it's true (scoll_mpi) while others assumed it's false
  (scoll_basic).
- In scoll_basic, if nlong_type==false, do not exit if nlong==0, since
  this parameter may not be the same on all PEs.
- In scoll_mpi, fallback to scoll_basic if nlong_type==false, since MPI
  requires the 'count' argument of MPI_Bcast to be valid on all ranks.

Signed-off-by: Yossi Itigin <yosefe@mellanox.com>
2019-01-01 20:43:32 +02:00
Aurelien Bouteiller
e54496bf2a
Merge pull request #6087 from ICLDisco/export/errors_cid
Manage errors in communicator creations (cid)
2018-12-31 15:01:55 -05:00
Jeff Squyres
17be4c6d1f
Merge pull request #6229 from jsquyres/pr/fix-enable-grequest-extension-in-a-tarball
romio321: ensure to distribute ompi_grequestx.h
2018-12-28 16:15:23 -05:00
Gilles Gouaillardet
79f02ade22
Merge pull request #6230 from ggouaillardet/topic/pmix_refresh
pmix/pmi4x: refresh to latest PMIx
2018-12-28 15:11:53 +09:00
Gilles Gouaillardet
0203531695 pmix/pmi4x: refresh to latest PMIx
refresh to pmix/pmix@fae0ee7d94

Refs. open-mpi/ompi#6228

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-12-28 12:57:57 +09:00
Gilles Gouaillardet
6dd8bb6e6c pmix: update git ignore
allow AUTHORS and contrib/perf_tools/Makefile from the embedded PMIx

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-12-28 12:57:15 +09:00
Jeff Squyres
62321be186 romio321: ensure to distribute ompi_grequestx.h
Refs https://github.com/open-mpi/ompi/issues/6227.  Thanks to
@georgemarselis for reporting.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-12-27 15:39:47 -08:00
Yossi Itigin
80313366fd
Merge pull request #6168 from hoopoepg/topic/get-put-int-uint-8-16-32
OSHMEM: added missing API for get/put operations
2018-12-26 12:05:41 +02:00
KAWASHIMA Takahiro
26a2054c75
Merge pull request #6225 from kawashima-fj/pr/mpiext-generated-headers
ompi_ext.m4: Allow generated MPI-ext Fortran headers
2018-12-26 16:04:44 +09:00
KAWASHIMA Takahiro
604dc9744b ompi_ext.m4: Allow generated MPI-ext Fortran headers
Allow MPI extensions to generate Fortran headers using Autoconf.

For example, allow following files.

```
ompi/mpiext/example/mpif-h/mpiext_example_mpifh.h.in
ompi/mpiext/example/use-mpi/mpiext_example_usempi.h.in
ompi/mpiext/example/use-mpi-f08/mpiext_example_usempif08.h.in
```

Generated MPI extension C headers are already allowed in commit
6a7d5271c4.

Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
2018-12-26 14:04:32 +09:00
KAWASHIMA Takahiro
90ae7d4917
Merge pull request #6224 from kawashima-fj/pr/config-fortran-type
config: Clean Fortran type check code
2018-12-26 09:07:49 +09:00
KAWASHIMA Takahiro
fc311a6ca5 config: Clean Fortran type check code
If the default value of `ofc_type_size` is `$ac_cv_sizeof_int`,
`OMPI_SIZEOF_FORTRAN_*` of all unavailable types become `sizeof(int)`.
This leads `OMPI_SIZEOF_FORTRAN_REAL2 == OMPI_SIZEOF_FORTRAN_REAL`
to become true unintentionally and `OMPI_DATATYPE_MPI_REAL2` has a
wrong value in `ompi/datatype/ompi_datatype_internal.h`. This is not
an actual bug because datatypes for unavailable types are not used.
However it is confusing. I looked the source tree and the history but
could find any basis of `$ac_cv_sizeof_int`.

If we don't use `implicit none` in `OMPI_FORTRAN_GET_KIND_VALUE`, and
if a Fortran compiler does not support `ISO_C_BINDING` completely,
a random value is set in `value` and the fallback route is not used.
It is not our intention.

Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
2018-12-25 17:17:57 +09:00
Ralph Castain
529e17e0d9
Merge pull request #6223 from ggouaillardet/topic/pmix_refresh
pmix/pmi4x: refresh to latest PMIx
2018-12-24 10:51:00 -08:00
bosilca
96f88052e9
Merge pull request #5948 from mkurnosov/coll-ireduce-silence-coverity
coll/libnbc/ireduce: silence Coverity warning CID 1440360
2018-12-24 12:59:16 -05:00
bosilca
593db292da
Merge pull request #5644 from mkurnosov/coll-iallreduce-rabenseifner
coll/libnbc: add Rabenseifner's algorithm for MPI_Iallreduce
2018-12-24 12:58:21 -05:00
bosilca
182a2db2a4
Merge pull request #6029 from ggouaillardet/topic/large_datatypes
opal/datatype: correctly handle large datatypes
2018-12-24 12:49:52 -05:00
Jeff Squyres
922fcca17e
Merge pull request #6220 from jsquyres/pr/fix-type-set-name
MPI_Type_set_name: fix string length at target
2018-12-23 21:33:46 -05:00
Jeff Squyres
908655adf4
Merge pull request #6219 from jsquyres/pr/warnnigs-stomp
opal: fix compiler warning
2018-12-23 16:03:10 -05:00
Jeff Squyres
efcaef74d8 MPI_Type_set_name: fix string length at target
opal_string_copy() takes care of all the string computations.
Specifically: when we converted to opal_string_copy(), we accidentally
left the *source* length as the argument, not the *target* length,
which resulted in one less character being copied than intended (as
was showing up in MTT C++ testing results).

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-12-23 13:00:01 -08:00
Jeff Squyres
a30864c634 opal: fix compiler warning
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-12-23 12:10:23 -08:00
Jeff Squyres
d2e3b03309
Merge pull request #6217 from jsquyres/pr/fix-CID-1441826
odls_base_default_fns.c: remove errant free
2018-12-22 10:37:18 -05:00
Jeff Squyres
f96c04244d odls_base_default_fns.c: put the free() in the right place
Fixes CID 1441826.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-12-22 06:40:05 -08:00
Aurelien Bouteiller
bd0d2b832e
Merge pull request #6086 from ICLDisco/export/errors_nbc
Manage errors in NBC collective ops
2018-12-21 02:34:00 -05:00
Hunter Easterday
509380d99f Fix white extra whitespace
Signed-off-by: Hunter Easterday <heasterday@lanl.gov>
2018-12-20 14:32:10 -07:00
heasterday
ad0d2c451e Update mpool_hugepage_component.c
Signed-off-by: Hunter Easterday <heasterday@lanl.gov>
2018-12-20 14:28:19 -07:00
Jeff Squyres
1be5358834
Merge pull request #6212 from jsquyres/pr/fix-treematch-common-symbol
treematch: fix global common symbol
2018-12-20 15:20:41 -05:00
Jeff Squyres
7962a8e40b
Merge pull request #6211 from jsquyres/pr/die-impi-die-die-die
Remove some IMPI attributes that were never implemented.
2018-12-20 14:51:55 -05:00
Jeff Squyres
e9a6246b90 treematch: fix global common symbol
Despite its name, this symbol doesn't need to be global.  So just make
it static.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-12-20 11:06:14 -08:00
bosilca
f96305f96b
Merge pull request #6199 from aravindksg/opal-threads-fix
opal/sync: Fix assert during multi-threaded progress invocation
2018-12-20 13:27:07 -05:00
Jeff Squyres
81bfb5f5e5 Remove some IMPI attributes that were never implemented.
This is a holdover from LAM/MPI that was never implemented here in
Open MPI (and never will be).  Might as well remove this dead code.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-12-20 10:12:32 -08:00
Nathan Hjelm
cf49957af6
Merge pull request #6207 from hjelmn/opal_cleanup
opal: fix common symbols introduced in opal cleanup
2018-12-19 15:39:39 -07:00
Jeff Squyres
0746b2edb3
Merge pull request #6208 from jsquyres/pr/info-get-fix
info_get: ensure to copy all requested characters
2018-12-19 17:36:57 -05:00
Jeff Squyres
9b88e60fc8 info_get: ensure to copy all requested characters
When querying an info value, copy out exactly as many characters as
the caller asked for -- do not artificially truncate the target just
to ensure that it is \0-terminated.

Specifically: do not use opal_string_copy() to copy info values,
because opal_string_copy() will guarantee to \0-terminate the target,
even if it means truncating the target.  E.g., if the caller calls
opal_info_get_nolock() with valuelen=5, opal_string_copy() will return
"1234\0" -- which is wrong.  This commit fixes the behavior to return
"12345".

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-12-19 13:01:45 -08:00
Nathan Hjelm
fd852c8f63 opal: fix common symbols introduced in opal cleanup
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-12-19 12:27:14 -07:00
Nathan Hjelm
4944508603
Merge pull request #6136 from hjelmn/opal_cleanup
opal: clean up init/finalize
2018-12-18 15:23:32 -07:00
Nathan Hjelm
46255d0790 test: call opal_init/finalize_util in ddt tests
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-12-18 14:37:04 -07:00
Nathan Hjelm
a39cb747dd ompi/datatype: don't call opal_datatype_finalize directly
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-12-18 14:37:04 -07:00
Nathan Hjelm
0edfd328f8 opal: clean up init/finalize
This commit contains the following changes:

 - Remove the unused opal_test_init/opal_test_finalize
   functions. These functions are not used by anything in the code
   base or MTT. Tests use opal_init_util/opal_finalize_util instead.

 - Get rid of gotos in opal_init_util and opal_init. Replaced them
   with a cleaner solution.

 - Automatically register cleanup functions in init functions. The
   cleanup functions are executed in the reverse order of the
   initialization functions. The cleanup functions are run in
   opal_finalize_util() before tearing down the class system.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-12-18 14:37:04 -07:00
Gilles Gouaillardet
b0a668457c pmix/pmi4x: refresh to latest PMIx
refresh to pmix/pmix@2d4c2874fd

Refs. open-mpi/ompi#6222

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-12-18 17:11:01 +09:00
Ralph Castain
6f5f31109a
Merge pull request #6203 from rhc54/topic/rk
If job is fully described, there will be no ppn string to unpack
2018-12-17 17:24:37 -08:00
Ralph Castain
f5383da6d9
Merge pull request #6202 from rhc54/topic/ext3x
Fix external PMIx v3 support
2018-12-17 16:43:54 -08:00
Ralph Castain
d728380741 If job is fully described, there will be no ppn string to unpack
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-12-17 16:13:55 -08:00
Ralph Castain
ece7696c2c Fix external PMIx v3 support
Don't erase the source files during "make clean"!

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-12-17 15:54:56 -08:00