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Граф коммитов

6140 Коммитов

Автор SHA1 Сообщение Дата
Aleksey Senin
ae92f64842 Check that MXM runtime version match compiled.
Reviewed by Mike Dubman.

This commit was SVN r27575.
2012-11-07 14:44:33 +00:00
Nathan Hjelm
51bf75f8e9 fix typo
This commit was SVN r27573.
2012-11-06 21:25:19 +00:00
Nathan Hjelm
1400bab466 fix a couple of errors in r27569
This commit was SVN r27572.

The following SVN revision numbers were found above:
  r27569 --> open-mpi/ompi@f3ce12e71a
2012-11-06 20:06:54 +00:00
Nathan Hjelm
7fb5caea92 Remove the finish_parsing function from various .l files. The function is incomplete (doesn't clean up the lex state) and should be replaced by *_yylex_destroy which correctly cleans up the state.
Checked with the flex 2.5.35. Verified with valgrind that this fixes several "still reachable" leaks.

cmr:v1.7

This commit was SVN r27571.
2012-11-06 19:26:14 +00:00
Nathan Hjelm
bdedd8b0d3 Per RFC modify the behavior of mca_base_components_close to NOT close the output. Modify frameworks to always close their output and set to -1.
Reasoning: The old behavior was a little confusing. mca_base_components_open does not open an output stream so it is a little unexpected that mca_base_components_close does. To add to this several frameworks (that don't use mca_base_components_close) failed to close their output in the framework close function and others closed their output a second time. This change is an improvement to the symantics of mca_base_components_open/close as they are now symetric in their functionality.

This commit was SVN r27570.
2012-11-06 19:09:26 +00:00
Nathan Hjelm
f3ce12e71a Per RFC fix several leaks in opal and ompi. Details below.
pml/v:
  - If vprotocol is not being used vprotocol_include_list is leaked. Assume vprotocol never takes ownership (see below) and always free the string.

coll/ml:
  - (patch verified) calling mca_base_param_lookup_string after mca_base_param_reg_string is unnecessary. The call to mca_base_param_lookup_string causes the value returned by mca_base_param_reg_string to be leaked.
  - Need to free mca_coll_ml_component.config_file_name on component close.

btl/openib:
  - calling mca_base_param_lookup_string after mca_base_param_reg_string is unnecessary. The call to mca_base_param_lookup_string causes the value returned by mca_base_param_reg_string to be leaked.

vprotocol/base:
  - There was no way for pml/v to determine if vprotocol took ownership of vprotocol_include_list. Fix by always never ownership (use strdup).

mca/base:
  - param_lookup will result in storage->stringval to be a newly allocated string if the mca parameter has a string value. ensure this string is always freed.

cmr:v1.7

This commit was SVN r27569.
2012-11-06 18:57:46 +00:00
Jeff Squyres
d6e9a14b14 Fix minor issue: the argv_delete may change the top list pointer. So
be sure to save it.

This commit was SVN r27568.
2012-11-06 16:05:58 +00:00
Matthias Jurenz
280930e299 Do forward '--with-cuda[-libdir]' arguments to the VT configure
This commit was SVN r27560.
2012-11-05 14:53:00 +00:00
Mike Dubman
d47d550dfc performance optimization: process completions in the batch manner
This commit was SVN r27559.
2012-11-05 14:02:37 +00:00
Mike Dubman
ca308974e0 Switched FCA collectives component from dlopen to compile-time linking to libfca
This commit was SVN r27557.
2012-11-02 17:30:00 +00:00
Jeff Squyres
4569f77645 Remove redundant common_verbs.h include.
This commit was SVN r27556.
2012-11-02 14:16:55 +00:00
Jeff Squyres
92e197de73 * MPI_Reduce_scatter_block is now implemented, so remove it from the
"not yet implemented" list (it was already in the mpi_api_files
   macro, actually)
 * Add mistakenly missed palltoall file.  Thanks to Brian for
   noticing its absence.

This commit was SVN r27554.
2012-11-01 13:58:40 +00:00
Mike Dubman
5cdb3654d7 SRQ now supported in ConnectIB
This commit was SVN r27552.
2012-11-01 08:13:56 +00:00
Brian Barrett
25ccfe1bdd Add autogen.sh to list of files to be distributed, so autogen works off a
tarball

This commit was SVN r27548.
2012-11-01 02:26:28 +00:00
Vishwanath Venkatesan
0e6378bfc9 Modifying the static component accordingly for the modification of interfaces in io_ompio.c
This commit was SVN r27546.
2012-10-31 22:09:21 +00:00
Vishwanath Venkatesan
d1fc22883a Changing the dynamic component accordingly for the modified interfaces
This commit was SVN r27545.
2012-10-31 22:08:25 +00:00
Vishwanath Venkatesan
67463de96f Changing the two-phase component accordingly for the modified interfaces.
This commit was SVN r27544.
2012-10-31 22:07:02 +00:00
Vishwanath Venkatesan
2922fa28a6 Changes to the interface for extracting timing information,
to avoid accessing datastructures across frameworks.

This commit was SVN r27543.
2012-10-31 22:03:05 +00:00
Nathan Hjelm
2acd0f83de Revert "Revert r27451 and r27456 - the cmd line parser is incorrectly marking the application as an MCA parameter".
It appears the problem was not with the command line parser but the rsh plm. I don't know why this problem was not occuring before the command line parser changes but it appears to be resolved now.

This commit was SVN r27527.

The following SVN revision numbers were found above:
  r27451 --> open-mpi/ompi@d59034e6ef
  r27456 --> open-mpi/ompi@ecdbf34937
2012-10-30 19:45:18 +00:00
Jeff Squyres
a980ee5ca1 Update to r27292: only use "valuelen-1" when the valuelen is
MPI_MAX_INFO_VAL (so that we don't go beyond the end of the string).
But otherwise, abibe by what says in MPI-2.2 / MPI-3.0 in the
description of MPI_INFO_GET (where "it" refers to the valuelen
argument):

    If it is less than the actual size of the value, the value is
    truncated. In C, valuelen should be one less than the amount of
    allocated space to allow for the null terminator.

cmr:v1.7

This commit was SVN r27522.

The following SVN revision numbers were found above:
  r27292 --> open-mpi/ompi@fb4af5e29c
2012-10-30 17:56:28 +00:00
Brian Barrett
c0f1775620 Fix warnings in nbc
This commit was SVN r27514.
2012-10-29 19:52:43 +00:00
Ralph Castain
6aac54b02e Revert r27510, r27509, and r27508.
Not sure what happened here, but the resulting trunk wouldn't even configure. After spending time fixing that problem, I found it wouldn't compile due to multiple syntax errors that had been introduced in both the OPAL and OMPI layer. This raised questions as to the completeness of the work.

Given that the author is departing, I pinged Jeff about it and we agreed to revert this for now. Hopefully, it can either be fixed by the author prior to actual departure, or someone else can pick it up (now that it is in the history) and fix it.

This commit was SVN r27511.

The following SVN revision numbers were found above:
  r27508 --> open-mpi/ompi@12c3c743de
  r27509 --> open-mpi/ompi@79e4a8ca38
  r27510 --> open-mpi/ompi@1ad5ff625a
2012-10-27 16:43:45 +00:00
Shiqing Fan
1ad5ff625a Don't know why these lines are modified, probably by subversion. Although it is harmless, change it back as what it was.
This commit was SVN r27510.
2012-10-27 03:04:45 +00:00
Shiqing Fan
79e4a8ca38 Revert two files. Wrong changes were made due to a failed update.
This commit was SVN r27509.
2012-10-27 02:57:22 +00:00
Shiqing Fan
12c3c743de Per the MemPin RFC, submit the component source files, and update the memchecker macros.
This commit was SVN r27508.
2012-10-27 02:48:20 +00:00
Ralph Castain
b1e119fe2c Add missing header files to tarball
This commit was SVN r27504.
2012-10-26 23:06:31 +00:00
Edgar Gabriel
3291e3abe3 make ROMIO operational with OpenMPI for PVFS2 file systems.
This commit was SVN r27501.
2012-10-26 18:43:59 +00:00
Brian Barrett
8b40c0de9b * Lock around tag management, so that it's thread safe
* Only register the progress function on first call to a non-blocking
  collective operation, to try to reduce overall performance impact
* Fix tag management in roll-over case

This commit was SVN r27498.
2012-10-26 15:36:09 +00:00
Brian Barrett
51a3ec2d7b remove now unused (after r27485) fake mpool component
This commit was SVN r27486.

The following SVN revision numbers were found above:
  r27485 --> open-mpi/ompi@a1a52c9e90
2012-10-25 21:52:17 +00:00
Brian Barrett
a1a52c9e90 Rather than use the fake mpool for handling callbacks into the MX library,
use the memory hooks interface (which does allow for multiple callbacks
to be registered) directly.

This commit was SVN r27485.
2012-10-25 21:50:07 +00:00
Ralph Castain
e6014bf2e1 Revert r27451 and r27456 - the cmd line parser is incorrectly marking the application as an MCA parameter
This commit was SVN r27477.

The following SVN revision numbers were found above:
  r27451 --> open-mpi/ompi@d59034e6ef
  r27456 --> open-mpi/ompi@ecdbf34937
2012-10-24 18:38:44 +00:00
Yael Dayan
d6f7e4eb73 openib: modified Mellanox ConnectIB max_inline_data param
This commit was SVN r27457.
2012-10-18 15:59:18 +00:00
Nathan Hjelm
d59034e6ef MCA: remove deprecated mca_base_param functions (mca_base_param_register_int, mca_base_param_register_string, mca_base_param_environ_variable). Remove all uses of deprecated functions.
cmr:v1.7

This commit was SVN r27451.
2012-10-17 20:17:37 +00:00
Vishwanath Venkatesan
6e3c9754a9 Initialization issue + fixing error in determining minimum value.
This commit was SVN r27443.
2012-10-11 23:41:25 +00:00
Vishwanath Venkatesan
95d38fdaf5 # Extracting timing information for the static collective write/read algorithms.
# The processes register their information and continue.
# Actual printing of timing information happens at file close.
# Triggered by MCA parameter at runtime

This commit was SVN r27442.
2012-10-11 21:27:47 +00:00
Vishwanath Venkatesan
240d56feeb # Extracting timing information for the two-phase collective write/read algorithms.
# The processes register their information and continue.
# Actual printing of timing information happens at file close.
# Triggered by MCA parameter at runtime

This commit was SVN r27441.
2012-10-11 21:25:30 +00:00
Vishwanath Venkatesan
7bc35f7862 # Extracting timing information for the dynamic collective write/read algorithms.
# The processes register their information and continue.
# Actual printing of timing information happens at file close.
# Triggered by MCA parameter at runtime

This commit was SVN r27440.
2012-10-11 21:23:24 +00:00
Vishwanath Venkatesan
9eeb3b5d50 # Extracting timing information for individual components of collective algorithm using a generic queue.
# This is triggered based on a mca-paramater and can be used with all collective modules.
# Individual queues maintained for read and write.
# The additional communication to combine data is done at file-close so that the 
  actual timing of collective-operations will not get affected. 
# The queues are initialized in file-open

This commit was SVN r27439.
2012-10-11 21:14:07 +00:00
Jeff Squyres
2ab48b997e Give a better verbose message if we're able to make an RC QP and we
didn't want one.

This commit was SVN r27438.
2012-10-11 19:21:21 +00:00
George Bosilca
9984a7143f Reorder the loop index.
This commit was SVN r27423.
2012-10-08 21:34:26 +00:00
George Bosilca
b46167fc4a Fix some issues with the MPI_IN_PLACE support.
This commit was SVN r27422.
2012-10-08 21:34:04 +00:00
Ralph Castain
95db4b7536 Fix typo
This commit was SVN r27417.
2012-10-05 03:56:31 +00:00
Ralph Castain
dab45fc0f6 Include missing header file in tarball
This commit was SVN r27415.
2012-10-05 01:47:05 +00:00
Vishwanath Venkatesan
c89c9e40be Code to extract neigbhouing offsets information from OMPIO into a file. Driven by an MCA parameter,
turned-off by default.

This commit was SVN r27407.
2012-10-04 21:53:26 +00:00
Vishwanath Venkatesan
c86e5f6263 set status->_ucount correctly for two-phase collective read and write operations in the module
This commit was SVN r27406.
2012-10-04 21:39:37 +00:00
Vishwanath Venkatesan
12363d50bd Setting the default stripe size to 1MB as 64KB is too small for a generic scenario.
This commit was SVN r27405.
2012-10-04 21:26:29 +00:00
Vishwanath Venkatesan
2ddbfbeb26 Setting the default stripe size for lustre to 64KB. This is an MCA parameter, can be overridden at runtime if needed.
This commit was SVN r27404.
2012-10-04 20:56:26 +00:00
Eugene Loh
25ad84b925 Ensure that MPI_Status objects have proper alignment:
- fix the Fortran layer to use new macros to convert Fortran-to-C status
- change the C internals to pull out old OMPI_SET_STATUS* macros

Also, change name of "status" argument in topo_test_f.c to "topo_type".

This commit was SVN r27403.
2012-10-04 14:39:51 +00:00
Yael Dayan
0122cf6cbb openib: added Mellanox ConnectIB device ID and params to the device parameters ini file
This commit was SVN r27402.
2012-10-04 13:20:47 +00:00
Pavel Shamis
e9df33c10b Fixing a coupe of issues in the iboffload code. It should fix the XRC compilation issue.
This commit was SVN r27400.
2012-10-03 15:44:51 +00:00