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Граф коммитов

20163 Коммитов

Автор SHA1 Сообщение Дата
Mike Dubman
daaf1d441d OSHMEM: added bunch of examples according to SPEC 1.0
fixed by Roman, reviewed by Igor/Mike

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r31449.
2014-04-19 05:03:44 +00:00
Jeff Squyres
3a8d2a0421 Sync with 1.8 branch NEWS
This commit was SVN r31446.
2014-04-19 00:31:34 +00:00
Jeff Squyres
1e500d7b37 Sync with v1.8 README
This commit was SVN r31444.
2014-04-19 00:30:38 +00:00
Jeff Squyres
38a27b858d Protect for the CLEANUP case where tmp hasn't been set yet
Refs trac:4536

This commit was SVN r31438.

The following Trac tickets were found above:
  Ticket 4536 --> https://svn.open-mpi.org/trac/ompi/ticket/4536
2014-04-18 23:34:53 +00:00
Jeff Squyres
482b465c05 Trivial format change: use the same length of lines and \n offsets as
opal_show_help().

Refs trac:4536

This commit was SVN r31437.

The following Trac tickets were found above:
  Ticket 4536 --> https://svn.open-mpi.org/trac/ompi/ticket/4536
2014-04-18 23:14:45 +00:00
Rolf vandeVaart
1fab9bb37f Fixes per review by jsquyres. Piggy back on btl_base_verbose rather than using my own special MCA var.
This commit was SVN r31427.
2014-04-18 18:09:09 +00:00
Nathan Hjelm
99812c8c07 Improve support for Cray's CLE 5
cmr=v1.8.1

This commit was SVN r31426.
2014-04-18 17:49:16 +00:00
Jeff Squyres
530f22c403 proc_info.c: uncomment C99 struct member initialization usage
The C99 usage to initialize via struct member names was already there,
but commented out.  This commit doesn't fix any known problem; it
simply uncomments the C99 code, because it's safer/better.

This commit was SVN r31425.
2014-04-18 17:26:07 +00:00
Nathan Hjelm
a88b24ce21 Per comments from Jeff makes some changes to the communicator changes.
Changed:

 - Use ompi_mpi_group_null instead of MPI_GROUP_NULL.

 - Asserts don't always quiet the clang static analyser. Change them to
   ifs to really quite the warnings.

cmr=v1.8.1:ticket=trac:4527:reviewer=jsquyres

This commit was SVN r31424.

The following Trac tickets were found above:
  Ticket 4527 --> https://svn.open-mpi.org/trac/ompi/ticket/4527
2014-04-18 17:23:46 +00:00
Ralph Castain
8594f5d738 Correctly set a non-zero exit status when mpirun is terminated by signal
Fixes trac:4537

cmr=v1.8.1:reviewer=jsquyres

This commit was SVN r31423.

The following Trac tickets were found above:
  Ticket 4537 --> https://svn.open-mpi.org/trac/ompi/ticket/4537
2014-04-18 16:39:08 +00:00
Ralph Castain
12094eb7b2 Add some further protections after discussion with Jeff
Refs trac:4536

This commit was SVN r31422.

The following Trac tickets were found above:
  Ticket 4536 --> https://svn.open-mpi.org/trac/ompi/ticket/4536
2014-04-18 16:21:55 +00:00
Ralph Castain
8d72633acf Ensure that the session directory fields of orte_process_info have been initialized prior to cleaning up those directories as part of the initialization process that deals with stale session directory trees.
Fixes trac:4534

cmr=v1.8.1:reviewer=jsquyres

This commit was SVN r31421.

The following Trac tickets were found above:
  Ticket 4534 --> https://svn.open-mpi.org/trac/ompi/ticket/4534
2014-04-18 14:25:48 +00:00
Rolf vandeVaart
a6a245b5b5 More efficient way of waiting for asynchronous copy to complete.
This commit was SVN r31420.
2014-04-17 15:18:50 +00:00
Nathan Hjelm
a03b11c20e bcol/basesmuma: fix broken allgather algorithm
The algorithm was failing ibm/collective/allgather and iallgather. I
cleaned up the code to eliminate duplicate code paths and tracked the
issue down to an error in the way extra nodes in the knomial exchange
are handled. The new code is more compact and has been tested with up
to 64 ranks with the ibm test suite.

cmr=v1.8.1:reviewer=manjugv

This commit was SVN r31419.
2014-04-16 22:43:52 +00:00
Nathan Hjelm
e125bbe347 coll/ml: clean out apparently stale code
The file coll_ml_ibarrier.c wasn't included in coll/ml's Makefile.am
and the setup code from coll_ml_hier_algorithms_ibarrier.c was not
being called. It looks like this code is stale and has long since been
replaced by the code in coll_ml_barrier.c

Once all these little CMRs are approved I may make it into one roll-up
CMR to make it easier on the RM.

cmr=v1.8.1:reviewer=manjugv

This commit was SVN r31418.
2014-04-16 22:43:43 +00:00
Nathan Hjelm
484a3f6147 coll/ml: fix issues identified by the clang static analyser and fix
a segmentation fault in the reduce cleanup

Some of the changes address false warnings produced by scan-build. I
added asserts and changed some malloc calls to calloc to silence these
warnings.

The was one issue in cleanup for reduce since the component_functions
member is changed by the allreduce call. There may be other issues
with how this code works but releasing the allocated
component_functions after setting up the static functions addresses
the primary issue (SIGSEGV).

cmr=v1.8.1:reviewer=manjugv

This commit was SVN r31417.
2014-04-16 22:43:35 +00:00
Nathan Hjelm
f80aece271 Silence warnings identified by the clang static analyzer in the
communicator code.

Many of the warnings were false warnings. These were silenced by
adding the appropriate asserts. Other warnings identified some
potential issues in error paths that should now be resolved.

cmr=v1.8.1:reviewer=jsquyres

This commit was SVN r31416.
2014-04-16 22:43:20 +00:00
Nathan Hjelm
a64bd4035c Fix bugs in intercomm creation and comm split.
This commit addresses bugs discovered by ggouaillardet.

 - Fix hang when creating an intercommunicator

 - Fix memory leak

 - Fix coverity warning cid70288

 - Fix false coverity warning cid1196589

Fixes trac:4507
Fixes trac:4522

cmr=v1.8.1:reviewer=jsquyres

This commit was SVN r31415.

The following Trac tickets were found above:
  Ticket 4507 --> https://svn.open-mpi.org/trac/ompi/ticket/4507
  Ticket 4522 --> https://svn.open-mpi.org/trac/ompi/ticket/4522
2014-04-16 22:43:12 +00:00
Mike Dubman
f9e813a003 OSHMEM: revert r31412, it did not pass jenkins
This commit was SVN r31414.

The following SVN revision numbers were found above:
  r31412 --> open-mpi/ompi@b0ade11ae4
2014-04-16 20:00:34 +00:00
Mike Dubman
b354dc92f2 OSHMEM: align with OSHMEM SPEC v1.0
- add some missing APIs
- change signature od shmem_finalize to comply with SGI spec

fixed by Roman, reviewed by Igor/Miked

Refs trac:4520

This commit was SVN r31413.

The following Trac tickets were found above:
  Ticket 4520 --> https://svn.open-mpi.org/trac/ompi/ticket/4520
2014-04-16 18:01:17 +00:00
Mike Dubman
b0ade11ae4 OSHMEM: fix compilation error with pathscale
Thanks to  Ake Sandgren for patch

reviewed by Roman/Miked

cmr=v1.8.1:reviewer=ompi-rm1.8

This commit was SVN r31412.
2014-04-16 17:58:22 +00:00
Jeff Squyres
ae43ae4d17 MPI_Type_indexed.3in: fix array_of_displacements type
This man page contains the prototype and descriptions for both
MPI_TYPE_INDEXED and MPI_TYPE_CREATE_HINDEXED.  Bastian Beischer
noticed that the type of the array_of_displacements argument in the
MPI_TYPE_CREATE_HINDEXED was wrong.

Also, a minor update to MPI_Type_hindexed.3in: indicate that the C
type is MPI_Aint and the Fortran type is INTEGER (which is why this
function was deprecated and then deleted by the MPI Forum!).

cmr=v1.8.1:reviewer=dgoodell

This commit was SVN r31411.
2014-04-16 15:25:37 +00:00
Jeff Squyres
1a274a45b2 Add "mpiteam" user (for git mirror script)
This commit was SVN r31410.
2014-04-16 10:28:56 +00:00
Jeff Squyres
0a5891760d Add script that re-generates .gitignore_global and .hgignore_global.
Also update the crontab file to show that it's running nightly at 1am.

This commit was SVN r31409.
2014-04-15 22:31:45 +00:00
MPI Team
5e4371139d Replace top-level .gitignore with .gitignore_global, and add .hgignore_global
The rationale for this name switch is as follows:

0. These two files will be automatically kept up-to-date with
   svn:ignore properties in the tree via a cron script.  Meaning: if a
   developer makes changes to svn:ignore properties, those changes
   will automatically be reflected in .gitignore_global /
   .hgignore_global within a fixed time period (at the moment,
   nightly).

1. Developers who make pure clones of git/hg OMPI repos can copy the
   relevant .*ignore_global file to .*ignore.  This gives them a good
   starting point for a fully-populated ignore file.  However, since
   the upstream _global file may change over time, developers will
   likely want to keep them in sync with their local .*ignore file.
   Here's two possibilities:

   1a. Maintain a single .*ignore file and manually merge in changes
       from the _global file upstream.

   1b. Maintain their local ignores in a .*ignore_local file, and
       periodically "cat .*ignore_global .*ignore_local > *.ignore"
       (e.g., whenever the upstream _global file changes).

2. Developers who make svn+clone checkouts can do similar things as
   listed in 1, with the added feature that they cannot make the
   mistake of committing their locally-modified .*ignore file back to
   SVN (presumably containing references to files that do not exist in
   SVN), since the .*ignore file is not in SVN.

Point #2 is probably the    stronger of these two reasons -- prevent
mistakes of developers accidentally committing locally-modified
.*ignore files back to SVN.

This commit was SVN r31408.
2014-04-15 22:24:44 +00:00
Ralph Castain
2fa1d15555 Cleanup the ignores
This commit was SVN r31407.
2014-04-15 22:00:54 +00:00
Ralph Castain
22348f7d62 As we do for Hg, ignore .git and .gitignore_local. Also ignore any orcm directory just to keep things clean
This commit was SVN r31406.
2014-04-15 22:00:17 +00:00
Ralph Castain
0bfce321cd Remove orcm-related platform files and ignore them from now on
This commit was SVN r31405.
2014-04-15 21:58:57 +00:00
Ralph Castain
0f02ba21df Remove --enable-sensors configuration option
This commit was SVN r31404.
2014-04-15 21:58:29 +00:00
Ralph Castain
a368e84e70 Per the RFC, remove the sensor framework from the ORTE code area, relocating it offsite to the ORCM code area. Also update some ignores to ensure we don't pickup crosstalk in components
This commit was SVN r31403.
2014-04-15 21:48:24 +00:00
Rolf vandeVaart
8897e2f5bb Fix typo error in commit r31388.
This commit was SVN r31398.

The following SVN revision numbers were found above:
  r31388 --> open-mpi/ompi@ccb33ff811
2014-04-15 19:50:54 +00:00
Jeff Squyres
75ed50c9bb build-*ignore.pl: add -o option to specify what file to write
Add some getopt options for both build-gitignore.pl and
build-hgignore.pl:

 -v: be a little verbose
 -h: show a quick help message
 -o: specify the output file to write

build-hgignore.pl defaults to writing .hgignore, and
build-gitignore.pl defaults to writing .gitignore.  But you can use -o
to specify writing a different filename.

This commit was SVN r31397.
2014-04-15 16:58:46 +00:00
Ryan Grant
6d577a2663 Update to atomics selection, fix octal issue and rename defines
This commit was SVN r31396.
2014-04-15 15:40:30 +00:00
Jeff Squyres
d46db26721 ompi_config.h: no need to AC_CONFIG_HEADER this file
Nothing is generated in this file; this commit essentially just
renames ompi_config.h.in -> ompi_config.h.

cmr=v1.8.1:reviewer=dgoodell

This commit was SVN r31395.
2014-04-15 15:38:49 +00:00
Jeff Squyres
fc91ed7fc0 ignore generators: sort the dirlist for repeatable output
Sort the output from reading directory contents so that the generated
.gitignore and .hgignore files will be much more consistent (and
friendly to change from subsequent runs, especially when they are
committed to SVN/git/hg repos).

This commit was SVN r31394.
2014-04-15 13:34:07 +00:00
Ryan Grant
e67ca81dca Fixing atomics selection issue, to be CMR'd after it passes the nightly tests
This commit was SVN r31393.
2014-04-15 13:17:04 +00:00
Mike Dubman
f06953236e OSHMEM: added missing files to changeset r31390
This commit was SVN r31392.

The following SVN revision numbers were found above:
  r31390 --> open-mpi/ompi@a3f83616fc
2014-04-15 07:23:39 +00:00
Oscar Vega-Gisbert
5a21790caa Java: improve access to Java arrays.
This commit was SVN r31391.
2014-04-14 21:29:13 +00:00
Mike Dubman
a3f83616fc OSHMEM: align profiling interface with SPEC 1.0
Now we should be full compliant to OSHMEM SPEC 1.0

fixed by Roman reviewed by Miked

cmr=v1.8.1:reviewer=ompi-rm1.8

This commit was SVN r31390.
2014-04-14 20:51:06 +00:00
Jeff Squyres
c0f3d80c98 Change this filename back (i.e., revert r31375).
It's a singular filename because there's only 1 interface in the
file.  Also, r31375 missed updating the name in a few places, and
broke the build for compilers that supported the mpi_f08 interface.

This commit was SVN r31389.

The following SVN revision numbers were found above:
  r31375 --> open-mpi/ompi@fe1935de14
2014-04-14 19:51:06 +00:00
Nathan Hjelm
ccb33ff811 btl: Use C99 sub-object naming when initializing BTL components
Two things to note:

 - This change will allow us to expand the BTL interface without
   having to worry about modifying BTLs that will not support the new
   interfaces. More on this will come later this year as part of the
   1.9 series.

 - C99 guarantees that uninitialed members of structs declared outside
   of functions (DATA binary section) will be initialized with
   0's. This allows us to drop stuff like .btl_flags = 0, or .btl_get
   = NULL.

This commit was SVN r31388.
2014-04-14 19:29:26 +00:00
George Bosilca
1cddb2aae8 Correctly save the displacement for the case where the convertor is not
completed. As we need to have the right displacement at the beginning
of the next call, we should save the position relative to the beginning
of the buffer and not to the last loop.

This commit was SVN r31387.
2014-04-14 04:46:58 +00:00
Ralph Castain
bbdbc5f8a8 Per suggestion from George, use a pipe for terminating the thread.
Refs trac:4510

This commit was SVN r31381.

The following Trac tickets were found above:
  Ticket 4510 --> https://svn.open-mpi.org/trac/ompi/ticket/4510
2014-04-14 01:02:46 +00:00
George Bosilca
373f97cdae Remove a non-necessary label.
This commit was SVN r31380.
2014-04-14 00:20:30 +00:00
Mike Dubman
325f4e0449 OSHMEM: sshmem verbs: ofed api changes
Use only contig allocator if shared_mr() is not supported
Fixes ibv_exp_reg_mr() parameters passing.
Fixes incorrect handling of sshmem_verbs_hca_name option.

fixed by AlexM, reviewed by Mike

cmr=v1.8.1:reviewer=ompi-rm1.8

This commit was SVN r31379.
2014-04-13 16:54:18 +00:00
Yossi Etigin
7efb724d7b osc/rdma: fix deadlock with put_long protocol.
When sending PUT_LONG, the data is sent before headers, and sometimes 
the header is not flushed immediately. This creates a lot of unexpected 
receives in the peer, since it would posts a receive only when gets the 
header, which makes it run out of receive buffers. When the sender 
eventually flushes the window, the receiver already has no buffers to 
receive the header, which causes a deadlock.

The fix is to always flush the headers when doing put_long.

cmr=v1.8.1:reviewer=hjelmn

This commit was SVN r31378.
2014-04-13 16:24:56 +00:00
Ralph Castain
deff85ffc3 Prevent a segfault if we encounter an error while parsing a hostfile. Don't issue and error_log output as the hostfile code already prints an error message
Thanks to Tetsuya Mishima for the patch. Reviewed ok by rhc.

RM-approved

cmr=v1.8.1:reviewer=ompi-gk1.8

This commit was SVN r31377.
2014-04-12 21:32:10 +00:00
Ralph Castain
2d8dff837c Ensure we properly terminate the listening thread prior to exiting, but do so in a way that doesn't make us wait for select to timeout.
Refs trac:4510

This commit was SVN r31376.

The following Trac tickets were found above:
  Ticket 4510 --> https://svn.open-mpi.org/trac/ompi/ticket/4510
2014-04-12 15:01:24 +00:00
Ralph Castain
fe1935de14 Rename file to match pattern used in other names and in Makefile.am
Don't know if this needs to go to 1.8.1, but will cmr it and leave for Jeff to decide

cmr=v1.8.1:reviewer=jsquyres

This commit was SVN r31375.
2014-04-12 14:43:20 +00:00
Jeff Squyres
ed32143dc5 fortran: remove warning that compiling the "mpi" module takes a long time
Since we only builds the "small" size of the "mpi" module any more, it
does not take a long time to compile.  So remove the warning that is
emitted.

Also remove a vestage of Windows support that was leftover in the
Fortran area (i.e., building mpi.obj).

This commit was SVN r31374.
2014-04-11 21:06:43 +00:00