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Автор SHA1 Сообщение Дата
Jeff Squyres
1c5664fdec
Merge pull request #4681 from nathanweeks/issue/f08_mpi_errcodes_ignore
Fix type of mpi_f08 MPI_ERRCODES_IGNORE
2018-01-10 12:34:16 -05:00
Nathan T. Weeks
3158d2c5ed Fix type of mpi_f08 MPI_ERRCODES_IGNORE
Signed-off-by: Nathan T. Weeks <weeks@iastate.edu>
2018-01-07 05:36:41 -08:00
KAWASHIMA Takahiro
710080be63
Merge pull request #4667 from kawashima-fj/pr/f08-pmpi
fortran: Fix PMPI interface bugs in mpi_f08 module
2018-01-05 03:45:10 -06:00
KAWASHIMA Takahiro
bd2fe9c324 fortran: Call PMPI from PMPI_Status_set_cancelled_f08
This is a bug which was forgotten to change in c08f97b0304.

Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
2017-12-26 15:53:12 +09:00
KAWASHIMA Takahiro
00e3c7a973 fortran: Align indentation
This change makes comparison of `mpi-f08-interfaces.F90` and
`pmpi-f08-interfaces.F90` easier.

Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
2017-12-26 14:39:09 +09:00
KAWASHIMA Takahiro
056eb39b12 fortran: Correct type of info_used
It is incorrectly typed as `MPI_Comm` in only `pmpi` in 24f7bd327e3.

Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
2017-12-26 14:39:09 +09:00
KAWASHIMA Takahiro
0c3a534b32 fortran: Use C_PTR for buffer_addr
It was changed to use `C_PTR` in only `mpi` in fc69c0be247.

Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
2017-12-26 14:39:09 +09:00
KAWASHIMA Takahiro
d4fc404dc6 fortran: Change PMPI_Aint_{add,diff} to functions.
They were incorrectly changed to subroutines in only `pmpi`
in 258d1aa1607.

Strictly speaking, this change involves binary incompatibility.
But nobody used these subroutines and nobody will be affected because
these subroutines were useless (didn't return a calculated value).

Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
2017-12-26 14:39:09 +09:00
KAWASHIMA Takahiro
9240967b8f fortran: Remove ASYNCHRONOUS from mpi_f08 pmpi
It was removed from only `mpi` as a bug fix in db41d749c1a.

Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
2017-12-26 14:39:09 +09:00
Tsubasa Yanagibashi
3f4b373856 Add missing Fortran 2008 binding subroutines
added missing Fortran 2008 binding pmpi_{*} subroutines to Open MPI.

Signed-off-by: Tsubasa Yanagibashi <fj2505dt@aa.jp.fujitsu.com>
2017-12-22 13:45:53 +09:00
Gilles Gouaillardet
794cc09d3e mpiext: fix path to Fortran 2008 modules
OMPI_FORTRAN_USEMPIF08_MOD macro was removed in open-mpi/ompi@791bcee6c0
so this macro is now manually expanded to mpi/fortran/use-mpi-f08/mod

Thanks to Nathan T. Weeks for reporting

Refs open-mpi/ompi#3605

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-12-11 11:02:43 +09:00
Gilles Gouaillardet
b9315edb85 configury: remove the --disable-mpi-io option
Fixes open-mpi/ompi#2185

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-09-20 14:39:09 +09:00
Jeff Squyres
791bcee6c0 ompi/fortran: remove proof-of-concept mpi_f08 module
This module was always intended to be a proof of concept, and was far
from complete.  If/when someone implemented F08 descriptor support for
the mpi_f08 module, this commit can either be restored or used as
reference material.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2017-08-10 06:19:17 -07:00
Gilles Gouaillardet
dfe7b2be3f fortran/use-mpi-f08-desc: add a missing include file
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-08-09 13:19:22 +09:00
Gilles Gouaillardet
2c71c27882 fortran2008: fix mpiext example
in order to solve an egg and the chicken problem,  in which mpiext need mpi-f08-types.mod
and/but use-mpi-f08[-desc] needs mpiext, add an extra step
- build fortran 2008 modules only
- build fortran 2008 mpi extensions
- and then build fortran 2008 bindings

Fixes open-mpi/ompi#3605

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-08-09 13:19:22 +09:00
Jeff Squyres
ccf17808b6 Merge pull request #3258 from markalle/pr/symbol_name_pollution
symbol name pollution
2017-07-12 16:19:25 -05:00
Gilles Gouaillardet
72cfbb665c ompi/attributes: revamp attribute handling.
we now have 12 cases to deal (4 writers and 3 readers) :

1. C `void*` is written into the attribute value, and the value is read into a C `void*` (unity)
2. C `void*` is written, Fortran `INTEGER` is read
3. C `void*` is written, Fortran `INTEGER(KIND=MPI_ADDRESS_KIND)` is read
4. Fortran `INTEGER` is written, C `void*` is read
5. Fortran `INTEGER` is written, Fortran `INTEGER` is read (unity)
6. Fortran `INTEGER` is written, Fortran `INTEGER(KIND=MPI_ADDRESS_KIND)` is read
7. Fortran `INTEGER(KIND=MPI_ADDRESS_KIND)` is written, C `void*` is read
8. Fortran `INTEGER(KIND=MPI_ADDRESS_KIND)` is written, Fortran `INTEGER` is read
9. Fortran `INTEGER(KIND=MPI_ADDRESS_KIND)` is written, Fortran `INTEGER(KIND=MPI_ADDRESS_KIND)` is read (unity)
10. Intrinsic is written, C `void*` is read
11. Intrinsic is written, Fortran `INTEGER` is read
12. Intrinsic is written, Fortran `INTEGER(KIND=MPI_ADDRESS_KIND)` is read

MPI-2 Fortran "integer representation" has type `INTEGER(KIND=MPI_ADDRESS_KIND)` as clarified
at https://github.com/mpiwg-rma/rma-issues/issues/1

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-07-12 10:27:45 +09:00
Joshua Hursey
c81795cbda Revert "Fix MPI_SIZEOF for gfortran 4.8"
This reverts commit 5de3d5dde688d1af4fc7c6c33636d5d808f40c0a.

 Signed-off-by: Joshua Hursey <jhursey@us.ibm.com>
2017-07-11 11:09:17 -05:00
Mark Allen
552216f9ba scripted symbol name change (ompi_ prefix)
Passed the below set of symbols into a script that added ompi_ to them all.

Note that if processing a symbol named "foo" the script turns
    foo  into  ompi_foo
but doesn't turn
    foobar  into  ompi_foobar

But beyond that the script is blind to C syntax, so it hits strings and
comments etc as well as vars/functions.

    coll_base_comm_get_reqs
    comm_allgather_pml
    comm_allreduce_pml
    comm_bcast_pml
    fcoll_base_coll_allgather_array
    fcoll_base_coll_allgatherv_array
    fcoll_base_coll_bcast_array
    fcoll_base_coll_gather_array
    fcoll_base_coll_gatherv_array
    fcoll_base_coll_scatterv_array
    fcoll_base_sort_iovec
    mpit_big_lock
    mpit_init_count
    mpit_lock
    mpit_unlock
    netpatterns_base_err
    netpatterns_base_verbose
    netpatterns_cleanup_narray_knomial_tree
    netpatterns_cleanup_recursive_doubling_tree_node
    netpatterns_cleanup_recursive_knomial_allgather_tree_node
    netpatterns_cleanup_recursive_knomial_tree_node
    netpatterns_init
    netpatterns_register_mca_params
    netpatterns_setup_multinomial_tree
    netpatterns_setup_narray_knomial_tree
    netpatterns_setup_narray_tree
    netpatterns_setup_narray_tree_contigous_ranks
    netpatterns_setup_recursive_doubling_n_tree_node
    netpatterns_setup_recursive_doubling_tree_node
    netpatterns_setup_recursive_knomial_allgather_tree_node
    netpatterns_setup_recursive_knomial_tree_node
    pml_v_output_close
    pml_v_output_open
    intercept_extra_state_t
    odls_base_default_wait_local_proc
    _event_debug_mode_on
    _evthread_cond_fns
    _evthread_id_fn
    _evthread_lock_debugging_enabled
    _evthread_lock_fns
    cmd_line_option_t
    cmd_line_param_t
    crs_base_self_checkpoint_fn
    crs_base_self_continue_fn
    crs_base_self_restart_fn
    event_enable_debug_output
    event_global_current_base_
    event_module_include
    eventops
    sync_wait_mt
    trigger_user_inc_callback
    var_type_names
    var_type_sizes

Signed-off-by: Mark Allen <markalle@us.ibm.com>
2017-07-11 02:13:23 -04:00
Chris Ward
5de3d5dde6 Fix MPI_SIZEOF for gfortran 4.8
Add copyrights.

Revise the README to take out the 'most notably' statement about GNU Fortran 4.8

Signed-off-by: Chris Ward <tjcw@uk.ibm.com>
2017-07-07 13:47:35 +01:00
Gilles Gouaillardet
08526e8adc fortran/base: rename strings.h into fortran_base_strings.h
rename ompi/mpi/fortran/base/strings.h so it does not get pulled
when /usr/include/strings.h is expected.

Refs open-mpi/ompi#3639

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-06-02 09:46:20 +09:00
Gilles Gouaillardet
384387bb53 Merge pull request #3411 from ggouaillardet/topic/mpi_f08_interfaces_callbacks
f08: make procedure(MPI_User_function) type available from mpi_f08
2017-05-17 09:02:26 +09:00
Gilles Gouaillardet
96b00b0fcf f08: make procedure(MPI_User_function) type available from mpi_f08
Refs. open-mpi/ompi#3409

Thanks Nathan T. Weeks for the report

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-04-25 13:33:00 +09:00
KAWASHIMA Takahiro
0fcd96486a fortran: Fix MPI_ARGV(S)_NULL compilation error
Fortran constants `MPI_ARGV_NULL` and `MPI_ARGVS_NULL` are defined
in MPI-3.1 p.680 as below.

> `MPI_ARGVS_NULL`
>   2-dim. array of `CHARACTER*(*)`
> `MPI_ARGV_NULL`
>   array of `CHARACTER*(*)`

`MPI_ARGV_NULL` and `MPI_ARGVS_NULL` are used as an argument of
`MPI_COMM_SPAWN` and `MPI_COMM_SPAWN_MULTIPLE` respectively and
their argument `argv` and `array_of_argv` are defined as below
for `USE mpi_f08` binding in MPI-3.1.

```
CHARACTER(LEN=*), INTENT(IN) :: argv(*)
CHARACTER(LEN=*), INTENT(IN) :: array_of_argv(count, *)
```

Defining them as `INTEGER` in `mpi_f08` module will cause
a compilation error of user programs like
"There is no specific subroutine for the generic 'mpi_comm_spawn'".

Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
2017-04-24 13:53:12 +09:00
Ralph Castain
1e2019ce2a Revert "Update to sync with OMPI master and cleanup to build"
This reverts commit cb55c88a8b7817d5891ff06a447ea190b0e77479.
2016-11-22 15:03:20 -08:00
Ralph Castain
cb55c88a8b Update to sync with OMPI master and cleanup to build
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2016-11-22 14:24:54 -08:00
Gilles Gouaillardet
bf789762a7 fortran/use-mpi-tkr: fix MPI_Sizeof handling
MPI_Sizeof related stuff has been moved to their own files.
Remove MPI_Sizeof from Fortran interfaces when it cannot be built
(e.g. stock gcc 4.8 on CentOS 7)

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2016-10-27 08:54:28 +09:00
Gilles Gouaillardet
1a16e68c26 fortran/use-mpi-trk: add PMPI_* interfaces in mpi module
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2016-10-27 08:54:07 +09:00
Gilles Gouaillardet
8e26e78728 fortran/use-mpi-tkr: only build MPI_File support if requested
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2016-10-27 08:54:07 +09:00
Gilles Gouaillardet
5543b19e9a fortran/use-mpi-tkr: rename mpi-f90-cptr-interfaces.F90 into mpi-f90-cptr-interfaces.h
this file is meant to be included and not compiled, so use a consistent naming

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2016-10-27 08:54:07 +09:00
Gilles Gouaillardet
e2769e4343 fortran/use-mpi-ignore-tkr: fix typo in MPI_File_write_at_all_begin interface 2016-10-24 09:53:52 +09:00
Gilles Gouaillardet
e02dc1e637 fortran/use-mpi-ignore-trk: fix typo in MPI_File_read_ordered_begin interface 2016-10-24 09:53:52 +09:00
Joshua Hursey
f6f24a4f67 build: Custom libmpi(_FOO) name option in configure
* Add a configure time option to rename libmpi(_FOO).*
   - `--with-libmpi-name=STRING`
 * This commit only impacts the installed libraries.
   Internal, temporary libraries have not been renamed to limit the
   scope of the patch to only what is needed.

For example:
```shell
shell$ ./configure --with-libmpi-name=wookie
...
shell$ find . -name "libmpi*"
shell$ find . -name "libwookie*"
./lib/libwookie.so.0.0.0
./lib/libwookie.so.0
./lib/libwookie.so
./lib/libwookie.la
./lib/libwookie_mpifh.so.0.0.0
./lib/libwookie_mpifh.so.0
./lib/libwookie_mpifh.so
./lib/libwookie_mpifh.la
./lib/libwookie_usempi.so.0.0.0
./lib/libwookie_usempi.so.0
./lib/libwookie_usempi.so
./lib/libwookie_usempi.la
shell$
```
2016-09-29 21:47:24 -05:00
Nathan Hjelm
8bdcb40dc4 ompi/fortran: fix typos in request RMA bindings
This commit fixes typos on the C side of the request-based RMA binding. We
were not returning the request on success but on failure. Thanks to
@alazzaro for reporting and @ggouaillardet, and @vondele for tracking
this down.

Fixes part of open-mpi/ompi#1869

Signed-off-by: Nathan Hjelm <hjelmn@me.com>
2016-07-18 13:46:28 -06:00
Ralph Castain
ee56d9dc1a Shorten the session directory name as some OS's are now providing unusually long temp directory names, causing us to overflow the sockaddr field 2016-07-05 14:59:50 -07:00
Aurélien Bouteiller
8344d00418 use-mpi extensions do not have a .la lib, so the fortran module should not depend on them. 2016-05-03 11:54:35 -04:00
Gilles Gouaillardet
01c90d4e71 fortran/mpif-h: fix *_create_keyval_f
correctly handle out parameter *_keyval when OMPI_SIZEOF_FORTRAN_INTEGER > SIZEOF_INT
2016-04-27 13:34:32 +09:00
Gilles Gouaillardet
178dde6a20 fortran/mpif-h: fix MPI_Win_shared_query
correctly handle out parameter disp_unit when OMPI_SIZEOF_FORTRAN_INTEGER > SIZEOF_INT
2016-04-27 11:22:09 +09:00
Gilles Gouaillardet
7f59d2a8c7 fortran/mpif-h: fix MPI_Win_free_keyval
initialize inout parameter when OMPI_SIZEOF_FORTRAN_INTEGER > SIZEOF_INT
2016-04-27 10:46:14 +09:00
Nathan Hjelm
60a3eb12ac comm_spawn_multiple_f: fix coverity issue
Fix CID 1327338: Resource leak (RESOURCE_LEAK):

Confirmed that the c_info array was being leaked. Free the array
before returning.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-03-11 13:07:01 -07:00
KAWASHIMA Takahiro
e854404570 fortran: Change the line order of #pragma
No code change.
These lines were introduced in my recent commit 17d32ac.
I had a editing mistake and the order is different from
other lines/files.
2016-04-15 12:49:03 +09:00
Jeff Squyres
4566286b9a Merge pull request #1538 from kawashima-fj/pr/fortran-binding-fix
fortran: Fix many Fortran binding bugs
2016-04-14 17:18:59 -04:00
KAWASHIMA Takahiro
17d32acbb6 fortran: Add missing (P)MPI_Alloc_mem_cptr_{f,f08} symbols
This commit adds the following symbols

  MPI_Alloc_mem_cptr_f
  MPI_Alloc_mem_cptr_f08
  PMPI_Alloc_mem_cptr_f
  PMPI_Alloc_mem_cptr_f08

These are implemented in the same way as other `_cptr` routines.
2016-04-12 22:40:58 +09:00
KAWASHIMA Takahiro
d48c8525ed fortran: Fix incorrect weak symbol names 2016-04-12 22:16:32 +09:00
KAWASHIMA Takahiro
5d32a601ff fortran: Add missing interfaces (part 2) 2016-04-12 22:06:35 +09:00
KAWASHIMA Takahiro
6f09d53e34 fortran: Add missing interfaces 2016-04-12 21:44:33 +09:00
KAWASHIMA Takahiro
f3b9a49ad1 fortran: Add missing PMPI interfaces 2016-04-12 20:55:41 +09:00
KAWASHIMA Takahiro
b6cb0bc257 fortran: Fix an incorrect interface name 2016-04-12 20:48:08 +09:00
KAWASHIMA Takahiro
96e93a9c5f fortran: Sort declared subroutins in alphabetical order
And insert necessary empty lines and remove unnecessary empty lines.

No code change.
2016-04-12 20:36:46 +09:00
KAWASHIMA Takahiro
334c63cf0a fortran: Change subroutine declaration order
Same order for `comm`, `type`, and `win`.

No code change.
2016-04-12 20:10:15 +09:00