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Граф коммитов

206 Коммитов

Автор SHA1 Сообщение Дата
Jeff Squyres
72704441a2 URLs: update URLs for GitHub 2014-10-01 14:44:09 -07:00
Ralph Castain
d50c8ba65f Per patch from Gilles, cleanup some errors that surface when building with PGI. Verified by Tetsuya, reviewed okay by Jeff.
RM-approved

cmr=v1.8.3:reviewer=ompi-gk1.8

This commit was SVN r32745.
2014-09-16 19:07:02 +00:00
Gilles Gouaillardet
f0108f881f oshmem: silence warning
ensure OSHMEM_PROFILING is #define'd even if profiling is not supported

cmr=v1.8.3:reviewer=miked

This commit was SVN r32670.
2014-09-05 08:37:29 +00:00
Gilles Gouaillardet
c2bcda518f oshmem: shpalloc returns the errcode as described in OpenSHMEM 1.1 api
cmr=v1.8.3:reviewer=jladd

This commit was SVN r32658.
2014-09-01 08:14:13 +00:00
Alina Sklarevich
e974bec57e OSHMEM: fix check-help-string.pl errors and warnings.
This commit was SVN r32511.
2014-08-12 11:30:14 +00:00
Gilles Gouaillardet
03fbd9a12d check-help-strings cleanup
This commit was SVN r32490.
2014-08-11 03:19:01 +00:00
Mike Dubman
e819a45cee shmem: opal refactoring voices
http://www.open-mpi.org/community/lists/devel/2014/08/15590.php

This commit was SVN r32489.
2014-08-10 08:06:37 +00:00
Mike Dubman
bb53dff57a oshmem: fix after opal refactoring
http://www.open-mpi.org/community/lists/devel/2014/08/15590.php

This commit was SVN r32488.
2014-08-10 07:30:12 +00:00
Mike Dubman
b99fd08c3d oshmem: scoll/fca - opal refactoring voices
based on http://www.open-mpi.org/community/lists/devel/2014/08/15590.php

This commit was SVN r32487.
2014-08-10 04:54:38 +00:00
Rolf vandeVaart
49ab9fe795 Add missing include file to fix build.
Refs trac:4826

This commit was SVN r32439.

The following Trac tickets were found above:
  Ticket 4826 --> https://svn.open-mpi.org/trac/ompi/ticket/4826
2014-08-06 13:57:53 +00:00
Gilles Gouaillardet
e8bf030d93 Use opal_getpagesize to get the proper page size
Refs trac:4826

This commit was SVN r32427.

The following Trac tickets were found above:
  Ticket 4826 --> https://svn.open-mpi.org/trac/ompi/ticket/4826
2014-08-05 05:35:57 +00:00
Gilles Gouaillardet
5f1e0f284a Fix compilation when --enable-hetorogeneous
This commit was SVN r32410.
2014-08-04 10:35:08 +00:00
Ralph Castain
552c9ca5a0 George did the work and deserves all the credit for it. Ralph did the merge, and deserves whatever blame results from errors in it :-)
WHAT:    Open our low-level communication infrastructure by moving all necessary components (btl/rcache/allocator/mpool) down in OPAL

All the components required for inter-process communications are currently deeply integrated in the OMPI layer. Several groups/institutions have express interest in having a more generic communication infrastructure, without all the OMPI layer dependencies.  This communication layer should be made available at a different software level, available to all layers in the Open MPI software stack. As an example, our ORTE layer could replace the current OOB and instead use the BTL directly, gaining access to more reactive network interfaces than TCP.  Similarly, external software libraries could take advantage of our highly optimized AM (active message) communication layer for their own purpose.  UTK with support from Sandia, developped a version of Open MPI where the entire communication infrastucture has been moved down to OPAL (btl/rcache/allocator/mpool). Most of the moved components have been updated to match the new schema, with few exceptions (mainly BTLs where I have no way of compiling/testing them). Thus, the completion of this RFC is tied to being able to completing this move for all BTLs. For this we need help from the rest of the Open MPI community, especially those supporting some of the BTLs.  A non-exhaustive list of BTLs that qualify here is: mx, portals4, scif, udapl, ugni, usnic.

This commit was SVN r32317.
2014-07-26 00:47:28 +00:00
Jeff Squyres
fa09477fdf shmem: include the rest of the patch -- update comments
Update the comments to be correct.

cmr=v1.8.2:ticket=trac:4808

This commit was SVN r32300.

The following Trac tickets were found above:
  Ticket 4808 --> https://svn.open-mpi.org/trac/ompi/ticket/4808
2014-07-23 21:36:25 +00:00
Joshua Ladd
4d64a642ca This fixes the oshmem build bug identified by Orion Poplawski where shmem
wrapper-data incorrectly adds @OMPI_WRAPPER_EXTRA_LIBS@. This fixes trac:4796 and should be
added to: 

cmr=v1.8.2:reviewer=jsquyres

This commit was SVN r32299.

The following Trac tickets were found above:
  Ticket 4796 --> https://svn.open-mpi.org/trac/ompi/ticket/4796
2014-07-23 21:26:36 +00:00
Mike Dubman
0c2aa8abcd OSHMEM: Set SMA_SYMMETRIC_SIZE to default value
OpenSHMEMspec 1.1 introduces a set of environment variables that allows users to configure the Open-SHMEM implementation, and receive information about the implementation.
- Add SMA_SYMMETRIC_SIZE - number of bytes to allocate for symmetric heap
- SHMEM_SYMMETRIC_HEAP_SIZE (Mellanox extension) is used by a user to provide a size of symmetric area. This change sets this env variable in case a user does not set this variable
  directly.

fixed by Igor, reviewed by Miked

cmr=v1.8.2:reviwer=ompi-rm1.8

This commit was SVN r32257.
2014-07-17 17:53:15 +00:00
Gilles Gouaillardet
c57687d8ec oshmem: remove automatically generated files from the tarball
cmr=v1.8.2:reviewer=miked

This commit was SVN r32245.
2014-07-15 07:52:54 +00:00
Mike Dubman
8d906b12f2 oshmem: fix warnings
fixed by Igor, reviewed by Miked

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r32217.
2014-07-11 13:25:09 +00:00
Jeff Squyres
75230ee574 spml_yoda_getreq.c: fix compile error related to r32196
This commit was SVN r32197.

The following SVN revision numbers were found above:
  r32196 --> open-mpi/ompi@a14e0f10d4
2014-07-10 17:17:19 +00:00
Nathan Hjelm
a14e0f10d4 Per RFC: Remove des_src and des_dst members from the
mca_btl_base_segment_t and replace them with des_local and des_remote

This change also updates the BTL version to 3.0.0. This commit does
not represent the final version of BTL 3.0.0. More changes are coming.

In making this change I updated all of the BTLs as well as BTL user's
to use the new structure members. Please evaluate your component to
ensure the changes are correct.

RFC text:

This is the first of several BTL interface changes I am proposing for
the 1.9/2.0 release series.

What: Change naming of btl descriptor members. I propose we change
des_src and des_dst (and their associated counts) to be des_local and
des_remote. For receive callbacks the des_local member will be used to
communicate the segment information to the callback. The proposed change
will include updating all of the doxygen in btl.h as well as updating
all BTLs and BTL users to use the new naming scheme.

Why: My btl usage makes use of both put and get operations on the same
descriptor. With the current naming scheme I need to ensure that there
is consistency beteen the segments described in des_src and des_dst
depending on whether a put or get operation is executed. Additionally,
the current naming prevents BTLs that do not require prepare/RMA matched
operations (do not set MCA_BTL_FLAGS_RDMA_MATCHED) from executing
multiple simultaneous put AND get operations. At the moment the
descriptor can only be used with one or the other. The naming change
makes it easier for BTL users to setup/modify descriptors for RMA
operations as the local segment and remote segment are always in the
same member field. The only issue I forsee with this change is that it
will require a little more work to move BTL fixes to the 1.8 release
series.

This commit was SVN r32196.
2014-07-10 16:31:15 +00:00
Ralph Castain
796f57f709 Protect against problems if someone passes us thru a pipe and then abnormally terminates the pipe early
This commit was SVN r32189.
2014-07-09 22:41:53 +00:00
Alex Mikheev
0dfd321b59 OSHMEM: fixes error handling in memheap
Memory registration is aborted on first failure.
Already registered memory is freed and
correct error code is returned.

Memory deregistration always suceeeds 

reviewed by miked
cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r32175.
2014-07-09 09:26:25 +00:00
Alex Mikheev
c3e017c190 OSHMEM: refactoring of fix wrong btl/sm processing
Use exising fields of mkey struct to identify 'shared memory'
segments.

mkey.u.key is now always initialized to MAP_SEGMENT_SHM_INVALID instead
of 0

reviewed by Mike and Igor
cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r32174.
2014-07-09 08:57:27 +00:00
Gilles Gouaillardet
3743c27c7a Handle error case in mca_spml_yoda_register
this commit fixes error propagation in :
 - mca_memheap_base_reg
 - mca_memheap_base_dereg

cmr=v1.8.2:reviewer=amikheev:ticket=4747

This commit was SVN r32173.

The following Trac tickets were found above:
  Ticket 4747 --> https://svn.open-mpi.org/trac/ompi/ticket/4747
2014-07-09 07:19:25 +00:00
Mike Dubman
503db51715 OSHMEM: properly handle situation when verb is unavailable
fixed by Alex, reviewed by Miked
cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r32103.
2014-06-28 19:02:24 +00:00
Mike Dubman
247da2819f OSHMEM: fix wrong btl/sm processing and typo
fixed by Igor reviewed by Alex,Mike,Yossi

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r32100.
2014-06-28 18:40:28 +00:00
Mike Dubman
5a06f5dff5 OSHMEM: fix bss check
fixed by AlexM reviewed by Miked

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r32099.
2014-06-28 18:37:45 +00:00
Ralph Castain
f3cb124e50 Revert r32082 and r32070 - the developer's conference has decided to go a different direction on the threaded progress effort. This will involve some degree of prototyping to understand the tradeoffs prior to making a final design decision, and so we'll hold off on the final change until that is completed.
This commit was SVN r32089.

The following SVN revision numbers were found above:
  r32070 --> open-mpi/ompi@12d92d0c22
  r32082 --> open-mpi/ompi@aa6438ef7a
2014-06-25 20:43:28 +00:00
Gilles Gouaillardet
53ae38cfb1 Handle error case in mca_spml_yoda_register
if source memory could not be registered, then return NULL
some cleanup might be needed, please refer to the FIXME in the code

cmr=v1.8.2:reviewer=miked

This commit was SVN r32081.
2014-06-25 08:58:45 +00:00
Gilles Gouaillardet
fae7adf8ee Remove legacy FCA_IS_LOCAL_PROCESS macro
and use OPAL_PROC_ON_LOCAL_NODE instead

cmr=v1.8.2:reviewer=rhc

This commit was SVN r32079.
2014-06-25 02:37:53 +00:00
Ralph Castain
12d92d0c22 Per the OMPI developer conference, remove the last vestiges of OMPI_USE_PROGRESS_THREADS
This commit was SVN r32070.
2014-06-24 17:05:11 +00:00
Alex Mikheev
3b5fa97790 OSHMEM: fixes problem with local heap2heap copy
check for possibility of heap2heap copy was incorrect
in case when shared heaps have different virtual
addresses on same host.

It seems that ibv_exp_reg_mr() on CIB cards may return
different VAs for heap on same node. On CX3 addresses are
the same.

reviewed by miked

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r31969.
2014-06-09 09:41:44 +00:00
Mike Dubman
55e35e0f6e OSHMEM: Fix issue with incorrect mca variables registration
Few components had wrong mca variables registration procedure
List of them:
- atomic basic and mxm
- spml yoda and ikrit
Two mca variables as runtime_api_verbose and runtime_lock_recursive change
names to oshmem_api_verbose and oshmem_lock_recursive otherwise they
were not shown by oshmem_info tool.

fixed by Igor, reviewed by Miked
cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r31962.
2014-06-06 17:36:47 +00:00
Oscar Vega-Gisbert
cc219218a7 Java: update javadoc's install locations
This commit was SVN r31914.
2014-06-01 15:40:14 +00:00
Oscar Vega-Gisbert
748d02e963 Java-oshmem: remove some 'len' parameters, new 'slice' methods, new class PSync
This commit was SVN r31912.
2014-06-01 15:06:35 +00:00
Mike Dubman
f2b4e5b156 OSHMEM: add compat to prev mxm version
fixed by ROman, reviewed by MikeD

Refs: #4672

This commit was SVN r31881.
2014-05-22 10:03:02 +00:00
Mike Dubman
d9d5dd701b OSHMEM: fix - use real mkey for atomics for rc/dc
fixed by Roman, reviewed by Vasily

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r31878.
2014-05-22 05:58:22 +00:00
Mike Dubman
5dd4c68a0f OSHMEM: use bulk connect/disconnect API
fixed by Yossi, reviewed by MikeD

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r31856.
2014-05-21 08:00:21 +00:00
Oscar Vega-Gisbert
1f017344ad Java-oshmem: replace Addr.offset/duplicate by slice
This commit was SVN r31843.
2014-05-20 21:12:39 +00:00
Oscar Vega-Gisbert
d42f03eb1f OSHMEM: rename atomic fetch&inc from 'pshmem_*' to 'shmem_*'
This commit was SVN r31842.
2014-05-20 20:45:07 +00:00
Mike Dubman
a7cec59ec3 OSHMEM: missing APIs are back and can be used.
fixed by Roman, reviewed by MikeD

This commit was SVN r31840.
2014-05-20 20:11:41 +00:00
Jeff Squyres
f8e37be1a9 oshmem/java: Add missing file to Makefile.am
cmr=v1.8.2:reviewer=osvegis

This commit was SVN r31837.
2014-05-20 16:32:41 +00:00
Mike Dubman
6839f08159 OSHMEM: fix warning
fixed by Igor, reviewed by MikeD

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r31832.
2014-05-20 05:52:31 +00:00
Mike Dubman
7c1eb0aad9 OSHMEM: fix for devices which do not support sharedmr
disqualify itself and use next allocator

fixed by Igor, reviewed by MikeD

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r31823.
2014-05-19 17:59:49 +00:00
Mike Dubman
5d76d30550 OSHMEM: add missing prototypes and remove unused functions
fixed by Roman, reviewed by MikeD

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r31819.
2014-05-19 13:34:53 +00:00
Mike Dubman
1f972737d4 OSHMEM: optimize print to spend less of formatting when not needed
fixed by Roman, reviewed by Miked
cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r31818.
2014-05-19 13:32:32 +00:00
Mike Dubman
d531a2ccad OSHMEM: Fix deadlock for collect operation using various data sizes.
Deadlock when using the shmem_collect32()/shmem_collect64() routines and any of the non-root PEs pass 0 as the number of elements.
Algorithm in _algorithm_central_collector() does use 0 as a special value, and thus does not break out of the loop.

fixed by IgorI, reviewed by MikeD

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r31814.
2014-05-19 06:17:53 +00:00
Ralph Castain
63d7ba6b25 Missed one instance of top_builddir
This commit was SVN r31812.
2014-05-19 04:18:29 +00:00
Ralph Castain
6f1320d5cd Cleanup the mess from r31810 - no way that could compile or avoid breaking the trunk. The Makefile's had to be added to oshmem_config_files.m4, and the Makefile.am's had not been updated to the new srcdir/builddir conventions. Also add svn:ignores
This commit was SVN r31811.

The following SVN revision numbers were found above:
  r31810 --> open-mpi/ompi@83bdebbf81
2014-05-19 04:14:54 +00:00
Oscar Vega-Gisbert
83bdebbf81 Java bindings for OSHMEM.
This commit was SVN r31810.
2014-05-18 21:48:09 +00:00