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Граф коммитов

6283 Коммитов

Автор SHA1 Сообщение Дата
Matthias Jurenz
7d4be1cb81 Changes to OTF:
- general: Fixed several Coverity warnings
	- otfprofile: Do not show helptext if '-V' given
	- otfinfo: Fixed counting of collective operations and markers

This commit was SVN r28195.
2013-03-21 11:25:05 +00:00
Vishwanath Venkatesan
e092cc34e0 Fixing the read all bugs discovered by Coverity
This commit was SVN r28189.
2013-03-20 20:27:09 +00:00
Matthias Jurenz
cf926da7e1 Changes to VT:
- configure: VPATH building: Moved adding of -I$top_srcdir to CPPFLAGS to the end of configure to prevent using this flags for configure checks
	- VT libs: Fixed potential segmentation fault (infinite recursion) when writing intermediate statistics (VT_STAT_INTV != 0)
	- vtunify: Fixed header include to disable OpenMP in the library version of vtunify (libvt-mpi-unify)
	- fixed several Coverity warnings

This commit was SVN r28187.
2013-03-20 15:22:21 +00:00
Samuel Gutierrez
8ce2041102 Cleanup in error path. Fixes CID 967211. Thanks, Jeff.
This commit was SVN r28183.
2013-03-19 20:00:08 +00:00
Jeff Squyres
2513122d31 Remove extraneous semicolon.
This commit was SVN r28180.
2013-03-18 23:58:11 +00:00
Jeff Squyres
7ac02fb9d4 Two fixes for the ROMIO io module:
* Don't call PMPI_* anything from our module code; that's terribly
   bad form (and disallowed!).  Instead, do the proper back-end stuff
   to reset the error handler on the file handle.
 * If we've already started to MPI_Finalize, then just give up and
   don't actually perform all the file closing actions (because
   ROMIO's file close calls MPI_Barrier, which will obviously fail if
   MPI_Finalize has already been invoked).  Bad user behavior should
   be punished (by leaking resources, not closing the file properly,
   etc.).

This commit was SVN r28177.
2013-03-18 20:11:20 +00:00
Jeff Squyres
447280b585 Fix Coverity CID 971095: minor memory leak
This commit was SVN r28170.
2013-03-15 15:04:35 +00:00
Brian Barrett
fc2b3b8d46 Ugh. Work around an issue with memory hooks and the change from one big
library to multiple libraries that are implicitly sucked into the executable
as a dependency of libmpi.  The initialize hook isn't visible to libc on some
linux distributions when it's in libopal and libopal isn't explicity linked
into the executable.  The fix is to have a duplicate initialize hook in
libmpi as well as libopal.  *sigh*.

This commit was SVN r28164.
2013-03-11 19:22:24 +00:00
Vasily Filipov
7bda23dd84 SBGP, BCOL: add missing "show_help.h" includes.
This commit was SVN r28163.
2013-03-10 09:11:09 +00:00
Matthias Jurenz
8094a57dc7 Changes to OTF:
- general:
		- incremented version number to 1.12.3
		- updated copyright information (2012->2013)
		- fixed compiler warnings occurred when NDEBUG is defined (--with-platform=optimized)
	- otfprofile, LaTeX output:
		- swapped x & y axis of the Message Data Rate Matrix
		- adapted labels to Vampir

Changes to VT:
	- general:
		- incremented version number to 5.14.3
		- updated copyright information (2012->2013)
		- fixed compiler warnings occurred when NDEBUG is defined (--with-platform=optimized)
	- configure / build system:
		- do not search for the MPI lib. when an MPI compiler wrapper was found (prevents double linkage of the MPI lib. when building vtunify-mpi and vtfilter-mpi)
		- prepend cross-prefix to the compiler wrappers *only* if '--with-cross-prefix[=PREFIX]' is given
		- removed unnecessary sources from libvt-java
	- VT libs:
		- extended inoffical API for manual region tracing: allow specifying a group name
		- plugin counters: Merge a set of post-mortem counters and write them under a single async key. This speeds up the unification.
		- Java tracing:
			- removed multiple asking for the current thread id when recording method enter/leave events
			- replaced hash function (id % prime) by Jenking's recommended one ( id & (hash_table_size-1) )
	- vtdyn: Do not instrument regions where inserting instrumentation would requires using a trap
	- vtsetup: Fixed availability state of the exec tracing feature

This commit was SVN r28162.
2013-03-08 13:50:26 +00:00
Brian Barrett
65109de931 Fix leak of comm and datatype references for mprobe/improbe and fix a request leak in improbe
This commit was SVN r28157.
2013-03-07 21:55:22 +00:00
Jeff Squyres
d9fed36793 This destruction logic was flat-out wrong. Harmless, but wrong.
Replace it with something much smaller and simpler.

This commit was SVN r28154.
2013-03-07 20:37:33 +00:00
Brian Barrett
db858827df Fill in more of the process info structure when using PMI
This commit was SVN r28152.
2013-03-06 19:32:47 +00:00
Brian Barrett
a67d768ee4 quick hack to get things compiling again. Still need to fill in the fixme parts. sigh.
This commit was SVN r28150.
2013-03-06 18:33:25 +00:00
Nathan Hjelm
3c5cd95087 mtl/psm: add missing header for opal_show_help (one more)
This commit was SVN r28147.
2013-03-05 00:18:51 +00:00
Nathan Hjelm
25d0d97d6b mtl/psm: add missing header for opal_show_help
This commit was SVN r28146.
2013-03-05 00:17:48 +00:00
Nathan Hjelm
213cb79fab mtl/psm: add missing header for opal_show_help
This commit was SVN r28145.
2013-03-05 00:15:11 +00:00
Rolf vandeVaart
037729dcbb Add a search path. Refactor code.
This commit was SVN r28142.
2013-03-01 21:50:56 +00:00
Rolf vandeVaart
5c761d701d Remove tabs for spaces, fix some error messages.
This commit was SVN r28141.
2013-03-01 19:13:06 +00:00
Rolf vandeVaart
ebe63118ac Remove dependency on libcuda.so when building in CUDA-aware support. Dynamically load it if needed.
This commit was SVN r28140.
2013-03-01 13:21:52 +00:00
Ralph Castain
a4b6fb241f Remove all remaining vestiges of the Windows integration
This commit was SVN r28137.
2013-02-28 17:31:47 +00:00
Nathan Hjelm
b5a2cd1cce remove csum pml
This commit was SVN r28133.
2013-02-28 00:17:56 +00:00
Brian Barrett
1370d4569a workaround for case when MD can't span all of memory (sigh)
This commit was SVN r28132.
2013-02-27 17:02:45 +00:00
Vasily Filipov
f897c8a1e0 MTL MXM: STREAM supporting for isend and irecv.
This commit was SVN r28122.
2013-02-27 13:21:30 +00:00
Ralph Castain
8d2fa3693b First cut at removing the native Windows support. Remove all the Windows-specific components, and the .windows files sprinkled around. Remove the Windows platform files and MTT scripts. Update the NEWS to point Windows users to the cygwin package.
This commit was SVN r28116.
2013-02-26 20:44:56 +00:00
Ralph Castain
bd9265c560 Per the meeting on moving the BTLs to OPAL, move the ORTE database "db" framework to OPAL so the relocated BTLs can access it. Because the data is indexed by process, this requires that we define a new "opal_identifier_t" that corresponds to the orte_process_name_t struct. In order to support multiple run-times, this is defined in opal/mca/db/db_types.h as a uint64_t without identifying the meaning of any part of that data.
A few changes were required to support this move:

1. the PMI component used to identify rte-related data (e.g., host name, bind level) and package them as a unit to reduce the number of PMI keys. This code was moved up to the ORTE layer as the OPAL layer has no understanding of these concepts. In addition, the component locally stored data based on process jobid/vpid - this could no longer be supported (see below for the solution).

2. the hash component was updated to use the new opal_identifier_t instead of orte_process_name_t as its index for storing data in the hash tables. Previously, we did a hash on the vpid and stored the data in a 32-bit hash table. In the revised system, we don't see a separate "vpid" field - we only have a 64-bit opaque value. The orte_process_name_t hash turned out to do nothing useful, so we now store the data in a 64-bit hash table. Preliminary tests didn't show any identifiable change in behavior or performance, but we'll have to see if a move back to the 32-bit table is required at some later time.

3. the db framework was a "select one" system. However, since the PMI component could no longer use its internal storage system, the framework has now been changed to a "select many" mode of operation. This allows the hash component to handle all internal storage, while the PMI component only handles pushing/pulling things from the PMI system. This was something we had planned for some time - when fetching data, we first check internal storage to see if we already have it, and then automatically go to the global system to look for it if we don't. Accordingly, the framework was provided with a custom query function used during "select" that lets you seperately specify the "store" and "fetch" ordering.

4. the ORTE grpcomm and ess/pmi components, and the nidmap code,  were updated to work with the new db framework and to specify internal/global storage options.

No changes were made to the MPI layer, except for modifying the ORTE component of the OMPI/rte framework to support the new db framework.

This commit was SVN r28112.
2013-02-26 17:50:04 +00:00
Jeff Squyres
c438692fac Thanks to Brian for noticing an incorrect MPI_ERR value in the Fortran
MPI constants, which led to also find that MPI_ERR_WIN was mistakenly
not defined in the Fortran MPI constants.

This fix also needs to be applied to v1.7.  Brian -- can you review?

cmr:v1.7

This commit was SVN r28102.
2013-02-25 17:28:30 +00:00
Ralph Castain
70a28c8a27 Now that we are using local ranks in OMPI, we need to define an ompi_local_rank_t and equate it to orte_local_rank_t. Change the sm btl to use the correct abstraction.
This commit was SVN r28098.
2013-02-22 17:48:53 +00:00
Jeff Squyres
fb217ff8ff Fix --disable-mpi-io in the Fortran mpi-f08 interface.
This commit was SVN r28097.
2013-02-22 03:08:04 +00:00
Samuel Gutierrez
af5ed9b25c OMPI_NODE_RANK_INVALID ==> OMPI_LOCAL_RANK_INVALID
This commit was SVN r28096.
2013-02-21 18:28:07 +00:00
Samuel Gutierrez
4bf0134901 Remove debug.
This commit was SVN r28095.
2013-02-21 18:21:22 +00:00
Samuel Gutierrez
b7791963f2 Fix sm BTL initialization for MPI_Comm_spawn and friends. Thanks to Jeff for
finding the issue.

This commit was SVN r28094.
2013-02-21 18:19:46 +00:00
Jeff Squyres
debe06289c Thanks to Siegmar Gross; he pointed out that I didn't read
http://docs.oracle.com/javase/tutorial/java/nutsandbolts/datatypes.html
carefully enough: a Java "char" is actually 16 bits, not 8.

This commit was SVN r28087.
2013-02-21 14:29:18 +00:00
Jeff Squyres
4e2ee5a27b Per
http://docs.oracle.com/javase/tutorial/java/nutsandbolts/datatypes.html,
the sizes of Java types are fixed.  So we just assign them to their
corresponding MPI fixed-size datatypes where possible.

This commit was SVN r28085.
2013-02-20 21:57:48 +00:00
Nathan Hjelm
55cf850eca Add comment about r28083
This commit was SVN r28084.

The following SVN revision numbers were found above:
  r28083 --> open-mpi/ompi@5411e28c00
2013-02-20 21:42:13 +00:00
Nathan Hjelm
5411e28c00 btl/openib: don't align fragments on 2 byte boundaries (changed to 8)
cmr:v1.6,v1.7

This commit was SVN r28083.
2013-02-20 21:27:01 +00:00
Rolf vandeVaart
da3e9ff906 Add show_help.h where needed.
This commit was SVN r28071.
2013-02-19 15:42:09 +00:00
Brian Barrett
3c83618799 fix a missing header file issue with IB
This commit was SVN r28070.
2013-02-18 18:29:14 +00:00
Vasily Filipov
52a9241859 MTL MXM: adapt to mxm 2.0 api changes - flags are only for send requests, and SYNC is part of the opcode.
This commit was SVN r28069.
2013-02-17 10:04:19 +00:00
Vasily Filipov
8270d8f52a MTL MXM: "#include "opal/util/show_help.h" adding.
This commit was SVN r28068.
2013-02-17 09:51:03 +00:00
Ralph Castain
ebad55b933 Apply patches from ORNL to fix compile issues - minor stuff. Thanks to Geoffroy Vallee for the patches.
This commit was SVN r28065.
2013-02-15 22:14:23 +00:00
Jeff Squyres
fde6207fe1 Patch for Cygwin support: use correct DSO/shared library prefix and
suffix.  Thanks to Marco Atzeri for reporting the issue and providing
an initial patch.

This commit was SVN r28059.
2013-02-15 14:12:39 +00:00
Jeff Squyres
bbddd6ea03 Add header file for opal_show_help().
This commit was SVN r28056.
2013-02-13 16:31:59 +00:00
Brian Barrett
504a6d036f * Rather than use the extra_includes directive, add the extra includes (which is really just -I${includedir}/openmpi/ for devel headers) to CPPFLAGS, since all the other necessary -Is for devel headers (like libevent and hwloc) are added to CPPFLAGS.
* Clean up ${includedir} and ${libdir} for script wrapper compilers
* Update script wrapper compilers to work like the C wrapper compilers w.r.t static and dynamic linking
* Remove the ORTE script wrapper compilers since they didn't support the ${includedir} stuff and Ralph said they weren't used anymore.

This commit was SVN r28052.
2013-02-13 00:33:05 +00:00
Brian Barrett
312f37706e In talking about this with Jeff and Ralph, we don't actually need
ompi_show_help, because opal_show_help is replaced with an 
aggregating version when using ORTE, so there's no reason to
directly call orte_show_help.

This commit was SVN r28051.
2013-02-12 21:10:11 +00:00
Joshua Ladd
70ad711337 Backing out the Open SHMEM project
This commit was SVN r28050.
2013-02-12 17:45:27 +00:00
Mike Dubman
ff384daab4 Added new project: oshmem.
This commit was SVN r28048.
2013-02-12 15:33:21 +00:00
Mike Dubman
55cb00f8a3 Remove references to unexisting files:
ompi/mca/common/netpatterns/
    ompi/mca/common/commpatterns/

This commit was SVN r28044.
2013-02-12 13:21:47 +00:00
Pavel Shamis
a31bc57849 Moving mca/common/netpatterns and commpaterns to ompi/patterns.
This commit was SVN r28035.
2013-02-05 21:52:55 +00:00
Brian Barrett
d80218996f Rather than setting up the direct call stuff in ompi_mca (which requires
modifying ompi_mca for every interface that is direct called), do it in
the framework's .m4 file.

This commit was SVN r28031.
2013-02-04 23:26:42 +00:00